These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 923 fasta sequence [CCGCTCCTCAGCCTCGGCGCCAAGTACGAGCCTTCACCGGCCGATGTTGCTTCGTCTTGCGATGTGACCTTCGCGATGCTTGCTGATCCGGAGAGCGCGGTTGAGGTTGCATGCGGGGCCAATGGAGCTGCACAGGGGATGGCCCCAGGGAAAGGGTATGTGGATGTGTCGACGGTTGACGCTGCTACATCCAAGCTGATTGGCAAGCACATTACAAGTACTGGGGCATCTTTCCTTGAGGCTCCAGTTTCAGGCTCAAAAAAGCCAGCAGAAGATGGGCTGCTCATCTTTCTTACCGCAGGTGATGAGTCCTTGTACAATAGAGTGGCATCCCTCCTTGATGTTATGGGCAAGTC-AAGATTTTTCCTCGGTGACGTTGGCAAAGGTGC-AGACATGAAGCTCGTTGTTAATATGGTCATGGGGAGCATGATGGTTTCGTTTTCAGAAGGACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAGGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTTCCATGGTTAAAGCTGCATACCCTACTGCTTTTCCTCTGAAGCATCAGCAGAAGGATTTGAGGCTCGCATTGGCCCTGGCAGAATCGGTGTCCCAGTCTATTCCTACAGTCGCAGCTGCAAACGAGCTGTACAAGGTCGCGAAATCGCTTGGGCTTGCAGACCAGGACTTCTCTGCTGTAATCGAGGCGCTGAAGGCAAAGGAGCAGAGCAAGTGAAAACTGCCATTGATGCATAGGAAACAAAATGTTTGTTCAGCTGCCA-TTGATGCAGCATTGTCTATCAATGAACTGAAACCATGGCAATTCTCCCAATTTTGTTACAGAAGTAATACTTGTTTTTCAGGAATAAAAAACTGATTGATGACAAAAAAAAA] [+] EMBL AK064876 [CCGCTCCTCAGCCTCGGCGCCAAGTACGAGCCTTCACCGGCCGATGTTGCTTCGTCTTGCGATGTGACCTTCGCGATGCTTGCTGATCCGGAGAGCGCGGTTGAGGTTGCATGCGGGGCCAATGGAGCTGCACAGGGGATGGCCCCAGGGAAAGGGTATGTGGATGTGTCGACGGTTGACGCTGCTACATCCAAGCTGATTGGCAAGCACATTACAAGTACTGGGGCATCTTTCCTTGAGGCTCCAGTTTCAGGCTCAAAAAAGCCAGCAGAAGATGGGCTGCTCATCTTTCTTACCGCAGGTGATGAGTCCTTGTACAATAGAGTGGCATCCCTCCTTGATGTTATGGGCAAGTC AAGATTTTTCCTCGGTGACGTTGGCAAAGGTGC AGACATGAAGCTCGTTGTTAATATGGTCATGGGGAGCATGATGGTTTCGTTTTCAGAAGGACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAGGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTTCCATGGTTAAAGCTGCATACCCTACTGCTTTTCCTCTGAAGCATCAGCAGAAGGATTTGAGGCTCGCATTGGCCCTGGCAGAATCGGTGTCCCAGTCTATTCCTACAGTCGCAGCTGCAAACGAGCTGTACAAGGTCGCGAAATCGCTTGGGCTTGCAGACCAGGACTTCTCTGCTGTAATCGAGGCGCTGAAGGCAAAGGAGCAGAGCAAGTGAAAACTGCCATTGATGCATAGGAAACAAAATGTTTGTTCAGCTGCCA TTGATGCAGCATTGTCTATCAATGAACTGAAACCATGGCAATTCTCCCAATTTTGTTACAGAAGTAATACTTGTTTTTCAGGAATAAAAAACTGATTGATGACA ] [+] EMBL BI804197 [ GCAAGTCAAAGA TTTTCCTC GTGACGTT GCAAA GTGCAAGACATGAAGCTCGTTGTTAATATGGTCATGGGGAGCATGATGGTTTCGTTTTCAGAAGGACTGCTCCTGAGCGAAAAAGTCGGCCTAGACCCCAATACTCTTGTCGAGGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTTCCATGGTTAAAGCTGCATACCCTACTGCTTTTCCTCTGAAGCATCAGCAGAAGGATTTGAGGCTCGCATTGGCCCTGGCAGAATCGGTGTCCCAGTCTATTCCTACAGTCGCAGCTGCAAACGAGCTGTACAAGGTCGCGAAATCGCTTGGGCTTGCAGACCAGGACTTCTCTGCTGTAATCGAGGCGCTGAAGGCAAAGGAGCAGAGCAAGTGAAAACTGCCATTGATGCATAGGAAACCAAATGTTTGTTCAGCTGCCACTTGATGCAGCATTGTCTATCAATGAACTGAAACCATGGCAATTCTCCCAATTTTGTTACAGAAGTAATACTTGTTTTTCAGGAATAAAAAACTGATTGATGACAAAAAAAAA] consensusID : consensus_6073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [TTTATTTGTCACCAAGGTGCTTATCAGTGGCTTCCCCATGGTTTCCTCCCTCCAAGGGCCCCTTTCCATGGGTTAAACCTGCTATACCCTACTGCTTTTCCTCTGAAGCATCAGCTAGTAAGGATTTGAGGCTCGCATTGGCCCTGCCTAGAATCGGTGTCCCAAGTCTAATTCCTGACAAGTCGGCCAGCTGCCAAACGACCTGTACCAAGNTCGCGAAATCGCTTGGGGCCTTCCAGACCAGGACTTNTGTCTGTAATCGAGGCGCCTGAAGCATAAGGACAGAGCCAAGTGAAAACTCCATTGANGCATAGGAAACAAANGTTGTTCACCTCCCATTGATGCCAGCATTGTCTATCAATGAACNGAAACCATGGCAATTCTCCCAATTTGGTTACAGAAGTAATACTTNCTTNTTCAGGGAATAAAAAACTGATGATGACAA] [+] EMBL BQ907955 [TTTATTTGTCACCAAGGTGCTTATCAGTGGCTTCCCCATGGTTTCCTCCCTCCAAGGGCCCCTTTCCATGGGTTAAACCTGCTATACCCTACTGCTTTTCCTCTGAAGCATCAGCTAGTAAGGATTTGAGGCTCGCATTGGCCCTGCCTAGAATCGGTGTCCCAAGTCTAATTCCTGACAAGTCGGCCAGCTGCCAAACGACCTGTACCAAGNTCGCGAAATCGCTTGGGGCCTTCCAGACCAGGACTTNTGTCTGTAATCGAGGCGCCTGAAGCATAAGGACAGAGCCAAGTGAAAACTCCATTGANGCATAGGAAACAAANGTTGTTCACCTCCCATTGATGCCAGCATTGTCTATCAATGAACNGAAACCATGGCAATTCTCCCAATTTGGTTACAGAAGTAATACTTNCTTNTTCAGGGAATAAAAAACTGATGATGACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6073#0 CCGCTCCTCAGCCTCGGCGCCAAGTACGAGCCTTCACCGGCCGATGTTGCTTCGTCTTGC 60 consensus_6073#1 ------------------------------------------------------------ consensus_6073#0 GATGTGACCTTCGCGATGCTTGCTGATCCGGAGAGCGCGGTTGAGGTTGCATGCGGGGCC 120 consensus_6073#1 ------------------------------------------------------------ consensus_6073#0 AATGGAGCTGCACAGGGGATGGCCCCAGGGAAAGGGTATGTGGATGTGTCGACGGTTGAC 180 consensus_6073#1 ------------------------------------------------------------ consensus_6073#0 GCTGCTACATCCAAGCTGATTGGCAAGCACATTACAAGTACTGGGGCATCTTTCCTTGAG 240 consensus_6073#1 ------------------------------------------------------------ consensus_6073#0 GCTCCAGTTTCAGGCTCAAAAAAGCCAGCAGAAGATGGGCTGCTCATCTTTCTTACCGCA 300 consensus_6073#1 ------------------------------------------------------------ consensus_6073#0 GGTGATGAGTCCTTGTACAATAGAGTGGCATCCCTCCTTGATGTTATGGGCAAGTCAAGA 360 consensus_6073#1 ------------------------------------------------------------ consensus_6073#0 TTTTTCCTCGGTGACGTTGGCAAAGGTGCAGACATGAAGCTCGTTGTTAATATGGTCATG 420 consensus_6073#1 ------------------------------------------------------------ consensus_6073#0 GGGAGCATGATGGTTTCGTTTTCAGAAGGACTGCTCCTGAGCGAAAAAGTTGGCCTAGAC 480 consensus_6073#1 ------------------------------------------------------------ consensus_6073#0 CCCAATACTCTTGTCGAGGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTC 540 consensus_6073#1 ---TTTATTTGTCACCAAGGTGCTTATCAGTGGCTTCCCCATGGTTTC----CTCCCTCC 53 ** * * * * * * ** ** * * * ** * * ** * consensus_6073#0 AAGGGCCC--TTCCATGG-TTAAAGCTGC-ATACCCTACTGCTTTTCCTCTGAAGCATCA 596 consensus_6073#1 AAGGGCCCCTTTCCATGGGTTAAACCTGCTATACCCTACTGCTTTTCCTCTGAAGCATCA 113 ******** ******** ***** **** ****************************** consensus_6073#0 GCAG--AAGGATTTGAGGCTCGCATTGGCCCTGGC-AGAATCGGTGTCCCA-GTCTA-TT 651 consensus_6073#1 GCTAGTAAGGATTTGAGGCTCGCATTGGCCCTGCCTAGAATCGGTGTCCCAAGTCTAATT 173 ** *************************** * *************** ***** ** consensus_6073#0 CCTAC--AGTCG--CAGCTGC-AAACGAGCTGTAC-AAGGTCGCGAAATCGCTTGGG--C 703 consensus_6073#1 CCTGACAAGTCGGCCAGCTGCCAAACGACCTGTACCAAGNTCGCGAAATCGCTTGGGGCC 233 *** ***** ******* ****** ****** *** ***************** * consensus_6073#0 TTGCAGACCAGGACTTCTCTGCTGTAATCGAGGCGCTGAAGGCAAAGGAGCAGAGC-AAG 762 consensus_6073#1 TTCCAGACCAGGACTTNTGT-CTGTAATCGAGGCGCCTGAAGCATAAGGACAGAGCCAAG 292 ** ************* * * *************** * *** * * ****** *** consensus_6073#0 TGAAAACTGCCATTGATGCATAGGAAACAAAATGTTTGTTCAGCTGCCATTGATGC-AGC 821 consensus_6073#1 TGAAAACT-CCATTGANGCATAGGAAACAAANG--TTGTTCACCTCCCATTGATGCCAGC 349 ******** ******* ************** ******* ** ********** *** consensus_6073#0 ATTGTCTATCAATGAACTGAAACCATGGCAATTCTCCCAATTTTGTTACAGAAGTAATAC 881 consensus_6073#1 ATTGTCTATCAATGAACNGAAACCATGGCAATTCTCCCAATTTGGTTACAGAAGTAATAC 409 ***************** ************************* **************** consensus_6073#0 TTGTTTTTC--AGGAATAAAAAACTGATTGATGACAAAAAAAAA 923 consensus_6073#1 TTNCTTNTTCAGGGAATAAAAAACTGAT-GATGACAA------- 445 ** ** * **************** ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||