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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6092#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1620 fasta sequence
[CAACTGCAAGAGCAAACCACCTCCAACCCCCGTTCGTCTTCGTCTTCCCCAGAAATCTCCCTGCAGGTAGTAGTAGGTAGGTAGGTTGGCAGAGGCAAGAAGATGGGGGGCGCCTTTACAGCGGCGCCCGCACTCGCTCTGGTCTTGCTCGTCGCCCTCTCGGTGGCGGCCACCGCGAATGTGGGGGATTCATGCTCGACGGCGGTGGACTGCGGCGGCGGGCAGTGGTGCTTCGACTGCCAGCCAGAGTTCGCCGGCTCCAGCTGCGTCCGCTCCGCCGCCACCAATCCCTTCCAACTCACTAACAACTCGTTGCCATTCAACAAGTATGCGTATCTCACGACACACAATTCATTTGCGATCGTTGGGGAGCCATCGCACACTGGAGTTCCACGCATCACCTTTGACAACCAGGAGGATACAGTCACTGATCAATTAAATAACGGTGTCCGCGCGCTGATGCTTGATACATATGACTTCAAAGGAGATGTATGGTTGTGCCATTCAAATGGAGGGAAATGCAATGATTTCACTGCATTCGAACCTGCATTGGACACATTCAAGGAAATCGAAGCCTTCCTTGGAGCCAATCCATCTGAAATCGTCACGTTGATCCTGGAAGACTACGTGCATGCACCGAATGGCCTGACAAACGTGTTCAAGGCCTCTGGTCTGATGAAGTACTGGTTTCCCGTGTCGAAAATGCCACAGAAAGGTAAGGATTGGCCTCTTGTCAGTGACATGGTTGCGAGCAACCAGCGCCTCCTTGTGTTCACCTCCATCAGGTCAAAGCAGGCTACTGAAGGAATCGCATACCAGTGGAACTACATGGTCGAGAACAACTACGGAGATGATGGTATGGATGCTGGCAAATGCTCAAATCGTGCAGAATCTGCACCTCTGAATGACAAAACCAAGTCGTTAGTCCTGGTGAACTACTTCCCATCGGTCCCGGTGAAGGTAACCGCATGCCTGCAGCACTCCAAGAGCCTTACTGACATGGTGAACACATGCTACGGTGCAGCTGGGAATCGATGGGCTAATTTACTCGCAGTTGATTACTATAAGAGAAGTGATGGAGGGGGCGCATTCCAAGCGACTGATTTGCTCAATGGCAGACTCCTGTGTGGATGCCAGGATGTCAGGGCTTGCTCGCGAGGATCTGGTGTAATATGTTCTTCATGAACCCTGGGGAAGTAGGATTTGATTGGAGTGGCACATCCACATAGAAAAAGTGTTTATGATGTGATGATTCAGAGATTTAGCCTCAAGACAACATTGTAGGATGCAGATTACCATAAACTTGAAAGTGATGGATTGACCTCCTCTTGTGAATAGTGAATTCGTTGCAAATACTTTATAGTGGGAGTGGAGGTGTTATCTGAAAGAAGAATAATTCGATTTTTGGGCCACATCGCCACGACAATAATATGTCATGTAAAAACACTTTTAAGTTCCAACCAAGGTTGAAAAATGAACTGGTGGTTCAAGGTTTAATATTAACAGGTTTCGATGTTTAGCACATTCTATATTGTAATGAAATTGTTGTAACTTTTTAAAAGATAGCTCTTAGTTGTAATGGACTTTTTCATTTTTAAACAATATCAATATGAACATCTG]
[+] EMBL AK064733 [CAACTGCAAGAGCAAACCACCTCCAACCCCCGTTCGTCTTCGTCTTCCCCAGAAATCTCCCTGCAGGTAGTAGTAGGTAGGTAGGTTGGCAGAGGCAAGAAGATGGGGGGCGCCTTTACAGCGGCGCCCGCACTCGCTCTGGTCTTGCTCGTCGCCCTCTCGGTGGCGGCCACCGCGAATGTGGGGGATTCATGCTCGACGGCGGTGGACTGCGGCGGCGGGCAGTGGTGCTTCGACTGCCAGCCAGAGTTCGCCGGCTCCAGCTGCGTCCGCTCCGCCGCCACCAATCCCTTCCAACTCACTAACAACTCGTTGCCATTCAACAAGTATGCGTATCTCACGACACACAATTCATTTGCGATCGTTGGGGAGCCATCGCACACTGGAGTTCCACGCATCACCTTTGACAACCAGGAGGATACAGTCACTGATCAATTAAATAACGGTGTCCGCGCGCTGATGCTTGATACATATGACTTCAAAGGAGATGTATGGTTGTGCCATTCAAATGGAGGGAAATGCAATGATTTCACTGCATTCGAACCTGCATTGGACACATTCAAGGAAATCGAAGCCTTCCTTGGAGCCAATCCATCTGAAATCGTCACGTTGATCCTGGAAGACTACGTGCATGCACCGAATGGCCTGACAAACGTGTTCAAGGCCTCTGGTCTGATGAAGTACTGGTTTCCCGTGTCGAAAATGCCACAGAAAGGTAAGGATTGGCCTCTTGTCAGTGACATGGTTGCGAGCAACCAGCGCCTCCTTGTGTTCACCTCCATCAGGTCAAAGCAGGCTACTGAAGGAATCGCATACCAGTGGAACTACATGGTCGAGAACAACTACGGAGATGATGGTATGGATGCTGGCAAATGCTCAAATCGTGCAGAATCTGCACCTCTGAATGACAAAACCAAGTCGTTAGTCCTGGTGAACTACTTCCCATCGGTCCCGGTGAAGGTAACCGCATGCCTGCAGCACTCCAAGAGCCTTACTGACATGGTGAACACATGCTACGGTGCAGCTGGGAATCGATGGGCTAATTTACTCGCAGTTGATTACTATAAGAGAAGTGATGGAGGGGGCGCATTCCAAGCGACTGATTTGCTCAATGGCAGACTCCTGTGTGGATGCCAGGATGTCAGGGCTTGCTCGCGAGGATCTGGTGTAATATGTTCTTCATGAACCCTGGGGAAGTAGGATTTGATTGGAGTGGCACATCCACATAGAAAAAGTGTTTATGATGTGATGATTCAGAGATTTAGCCTCAAGACAACATTGTAGGATGCAGATTACCATAAACTTGAAAGTGATGGATTGACCTCCTCTTGTGAATAGTGAATTCGTTGCAAATACTTTATAGTGGGAGTGGAGGTGTTATCTGAAAGAAGAATAATTCGATTTTTGGGCCACATCGCCACGACAATAATATGTCATGTAAAAACACTTTTAAGTTCCAACCAAGGTTGAAAAATGAACTGGTGGTTCAAGGTTTAATATTAACAGGTTTCGATGTTTAGCACATTCTATATTGTAATGAAATTGTTGTAACTTTTTAAAAGATAGCTCTTAGTTGTAATGGACTTTTTCATTTTTAAACAATATCAATATGAACATCTG]
consensusID : consensus_6092#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence
[GAAGGAGTAGAAAACCGAATGGCCTGACAAACGTGTTCAAGGCCTCTGGTCTGATGAAGTACTGGTTTCCCGTGTCGAAAATGCCACAGAAAGGTAAGGATTGGCCTCTTGTCAGTGACATGGTTGCGAGCAACCAGCGCCTCCTTGTGTTCACCTCCATCAGGTCAAAGCAGGCTACTGAAGGAATCGCATACCAGTGGAACTACATGGTCGAGAACAACTACGGAGATGATGGTATGGATGCTGGCAAATGCTCAAATCGTGCAGAATCTGCACCTCTGAATGACAAAACCAAGTCGTTAGTCCTGGTGAACTACTTCCCATCGGTCCCGGTGAAGGTAACCGCATGCCTGCAGCACTCCAAGAGCCTTACTGACATGGTGAACACATGCTACGGTGCAGCTGGGAATCGATGGGCTAATTTACTCGCAGTTGATTACTATAAGAGAAGTGATGGAGGGGGCGCATTCCAAGCGACTGATTTGCTCAATGGCAGACTCCTGTGTGGATGCCAGGATGTCAGGGCTTGCTCGGTGAGACGAGAGACAGGACACACTTGCTTCTTACCTCCTCGTGCATCTGTGGATCTGGATATGATGTTATGTGAATCATAAGTCATG]
[+] EMBL CF311183 [GAAGGAGTAGAAAACCGAATGGCCTGACAAACGTGTTCAAGGCCTCTGGTCTGATGAAGTACTGGTTTCCCGTGTCGAAAATGCCACAGAAAGGTAAGGATTGGCCTCTTGTCAGTGACATGGTTGCGAGCAACCAGCGCCTCCTTGTGTTCACCTCCATCAGGTCAAAGCAGGCTACTGAAGGAATCGCATACCAGTGGAACTACATGGTCGAGAACAACTACGGAGATGATGGTATGGATGCTGGCAAATGCTCAAATCGTGCAGAATCTGCACCTCTGAATGACAAAACCAAGTCGTTAGTCCTGGTGAACTACTTCCCATCGGTCCCGGTGAAGGTAACCGCATGCCTGCAGCACTCCAAGAGCCTTACTGACATGGTGAACACATGCTACGGTGCAGCTGGGAATCGATGGGCTAATTTACTCGCAGTTGATTACTATAAGAGAAGTGATGGAGGGGGCGCATTCCAAGCGACTGATTTGCTCAATGGCAGACTCCTGTGTGGATGCCAGGATGTCAGGGCTTGCTCGGTGAGACGAGAGACAGGACACACTTGCTTCTTACCTCCTCGTGCATCTGTGGATCTGGATATGATGTTATGTGAATCATAAGTCATG]
consensusID : consensus_6092#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence
[TCTGGATATGATGTTATGTGAATCATAAGTCATGACAAGAGTTTATATCTGTTTACCTCTANTCCCCTCATTTGCAGCGAGGATCTGGTGTAATATGTTCTTCATGAACCCTGGGGAAGTAGGATTTGATTGGAGTGGCACATCCACATAGAAAAAGTGTTTATGATGTGATGATTCAGAGATTTAGCCTCAAGACAACATTGTAGGATGCAGATTACCATAAACTTGAAAGTGATGGATTGACCTCCTCTTGTGAATAGTGAATTCGTTCGTATAATAAATATTTATTTCAAGAGAATATATTGAAAAAAGAATATACTTGTGCATATTTTTTTAGTCATACACTATTTTTACAGACAAATTATACTTGTAGGTTGCAAATACTTTATAGTGGGAGTGGTGGTGTTATCTGAAAGAAGAATAATTCGATTTTTGGGCCACATCGCCACGACAATAATATGTCATGTAAAAACACTTTTAAGTTCCAACCAAGGTTGAAAAATGAACTGGTGGTTCAAGGTTTAATATTAACAGGTTTCGATGTTTAGCACATTCTATATTGTAATGAAATTGTTGTAACTTTTTAAAAGATAAAAAAA]
[-] EMBL CF311184 [TCTGGATATGATGTTATGTGAATCATAAGTCATGACAAGAGTTTATATCTGTTTACCTCTANTCCCCTCATTTGCAGCGAGGATCTGGTGTAATATGTTCTTCATGAACCCTGGGGAAGTAGGATTTGATTGGAGTGGCACATCCACATAGAAAAAGTGTTTATGATGTGATGATTCAGAGATTTAGCCTCAAGACAACATTGTAGGATGCAGATTACCATAAACTTGAAAGTGATGGATTGACCTCCTCTTGTGAATAGTGAATTCGTTCGTATAATAAATATTTATTTCAAGAGAATATATTGAAAAAAGAATATACTTGTGCATATTTTTTTAGTCATACACTATTTTTACAGACAAATTATACTTGTAGGTTGCAAATACTTTATAGTGGGAGTGGTGGTGTTATCTGAAAGAAGAATAATTCGATTTTTGGGCCACATCGCCACGACAATAATATGTCATGTAAAAACACTTTTAAGTTCCAACCAAGGTTGAAAAATGAACTGGTGGTTCAAGGTTTAATATTAACAGGTTTCGATGTTTAGCACATTCTATATTGTAATGAAATTGTTGTAACTTTTTAAAAGATAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6092#0 CAACTGCAAGAGCAAACCACCTCCAACCCCCGTTCGTCTTCGTCTTCCCCAGAAATCTCC 60
consensus_6092#1 ------------------------------------------------------------
consensus_6092#2 ------------------------------------------------------------
consensus_6092#0 CTGCAGGTAGTAGTAGGTAGGTAGGTTGGCAGAGGCAAGAAGATGGGGGGCGCCTTTACA 120
consensus_6092#1 ------------------------------------------------------------
consensus_6092#2 ------------------------------------------------------------
consensus_6092#0 GCGGCGCCCGCACTCGCTCTGGTCTTGCTCGTCGCCCTCTCGGTGGCGGCCACCGCGAAT 180
consensus_6092#1 ------------------------------------------------------------
consensus_6092#2 ------------------------------------------------------------
consensus_6092#0 GTGGGGGATTCATGCTCGACGGCGGTGGACTGCGGCGGCGGGCAGTGGTGCTTCGACTGC 240
consensus_6092#1 ------------------------------------------------------------
consensus_6092#2 ------------------------------------------------------------
consensus_6092#0 CAGCCAGAGTTCGCCGGCTCCAGCTGCGTCCGCTCCGCCGCCACCAATCCCTTCCAACTC 300
consensus_6092#1 ------------------------------------------------------------
consensus_6092#2 ------------------------------------------------------------
consensus_6092#0 ACTAACAACTCGTTGCCATTCAACAAGTATGCGTATCTCACGACACACAATTCATTTGCG 360
consensus_6092#1 ------------------------------------------------------------
consensus_6092#2 ------------------------------------------------------------
consensus_6092#0 ATCGTTGGGGAGCCATCGCACACTGGAGTTCCACGCATCACCTTTGACAACCAGGAGGAT 420
consensus_6092#1 ------------------------------------------------------------
consensus_6092#2 ------------------------------------------------------------
consensus_6092#0 ACAGTCACTGATCAATTAAATAACGGTGTCCGCGCGCTGATGCTTGATACATATGACTTC 480
consensus_6092#1 ------------------------------------------------------------
consensus_6092#2 ------------------------------------------------------------
consensus_6092#0 AAAGGAGATGTATGGTTGTGCCATTCAAATGGAGGGAAATGCAATGATTTCACTGCATTC 540
consensus_6092#1 ------------------------------------------------------------
consensus_6092#2 ------------------------------------------------------------
consensus_6092#0 GAACCTGCATTGGACACATTCAAGGAAATCGAAGCCTTCCTTGGAGCCAATCCATCTGAA 600
consensus_6092#1 ------------------------------------------------------------
consensus_6092#2 ------------------------------------------------------------
consensus_6092#0 ATCGTCACGTTGATCCTGGAAGACTACGTGCATGCACCGAATGGCCTGACAAACGTGTTC 660
consensus_6092#1 -----------------GAAGGAGTA-----GAAAACCGAATGGCCTGACAAACGTGTTC 38
consensus_6092#2 -----------------------------------TCTGGATATGATGTTATGTGAATCA 25
* * ** ** * * *
consensus_6092#0 AAGGCCTCTGGTCTGATGAAGTACTGGTTTCCCGTGTCGAAAATGCCACAGAAAGGTAAG 720
consensus_6092#1 AAGGCCTCTGGTCTGATGAAGTACTGGTTTCCCGTGTCGAAAATGCCACAGAAAGGTAAG 98
consensus_6092#2 TAAGTCA-TGACAAGAGTTTATATCTGTTTACCT--CTANTCCCCTCATTTGCAGCGAGG 82
* * * ** ** ** **** ** ** ** * *
consensus_6092#0 GATTGGCCTCTTGTCAGTGACATGGTTGC-GAGCAACCAGCGCCTCCTTGTGTT--CACC 777
consensus_6092#1 GATTGGCCTCTTGTCAGTGACATGGTTGC-GAGCAACCAGCGCCTCCTTGTGTT--CACC 155
consensus_6092#2 ATCTGGTGTAATATGTTCTTCATGAACCCTGGGGAAGTAGGATTTGATTGGAGTGGCACA 142
*** * * * **** * * * ** ** * *** * ***
consensus_6092#0 TCCATCAGGTCAAAGCAGGCTACTGAAGGAATCGCATACCAGTGGAACTACATGGTCGAG 837
consensus_6092#1 TCCATCAGGTCAAAGCAGGCTACTGAAGGAATCGCATACCAGTGGAACTACATGGTCGAG 215
consensus_6092#2 TCCACATAGAAAAAGT--GTTTATGATGTGATGATTCAGAGATTTAGCCTCAAG------ 194
**** * **** * * *** * ** * * * * ** *
consensus_6092#0 AACAACTACGGAGATGATGGTATGGATGCTGGCAAATGCTCAAATCGTGCAGAATCTGCA 897
consensus_6092#1 AACAACTACGGAGATGATGGTATGGATGCTGGCAAATGCTCAAATCGTGCAGAATCTGCA 275
consensus_6092#2 -ACAAC-------ATTGTAGGATGCAGATTACCATAAACTTGAAA-GTGATGGATTGACC 245
***** ** * * *** * * ** * ** ** *** * ** *
consensus_6092#0 CCTCTGAATGACAAAACCAAGTCGTTAGTCCTGGTGAACTACTTCCCATCGGTCCCGGTG 957
consensus_6092#1 CCTCTGAATGACAAAACCAAGTCGTTAGTCCTGGTGAACTACTTCCCATCGGTCCCGGTG 335
consensus_6092#2 TCCTCTTGTGA-ATAGTGAATTCGTTCGTATAATAAATATTTATTTCAAGAGAATATATT 304
* *** * * ** ***** ** * * * ** * *
consensus_6092#0 AAGGTAACCGCATGCCTGCA-GCACTCCAAGAGCCTTAC--TGACATGGTGAACACATGC 1014
consensus_6092#1 AAGGTAACCGCATGCCTGCA-GCACTCCAAGAGCCTTAC--TGACATGGTGAACACATGC 392
consensus_6092#2 GAAAAAAGAATATACTTGTGCATATTTTTTTAGTCATACACTATTTTTACAGACAAATTA 364
* ** ** * ** * * ** * *** * * *** **
consensus_6092#0 TACGGTGCAGCTGGGAATCGATGGGCTAATTTACTCGCAGTTGATTACTATAAGAGAAGT 1074
consensus_6092#1 TACGGTGCAGCTGGGAATCGATGGGCTAATTTACTCGCAGTTGATTACTATAAGAGAAGT 452
consensus_6092#2 TACT-TGTAGGTTGCAAATACTTTA-TAGTGGGAGTGGTGGTGTTATCTGAAAGAAGAAT 422
*** ** ** * * ** * ** * * * ** * ** **** * *
consensus_6092#0 GATGGAG-----GGGGCGCATT-CCAAGCGACTGATTTGCTCAATGGCAG-ACTCCTGTG 1127
consensus_6092#1 GATGGAG-----GGGGCGCATT-CCAAGCGACTGATTTGCTCAATGGCAG-ACTCCTGTG 505
consensus_6092#2 AATTCGATTTTTGGGCCACATCGCCACGACAATAATATGTCATGTAAAAACACTTTTAAG 482
** *** * *** *** * * * ** ** * * *** * *
consensus_6092#0 TGGATGCCAGGATGTCAGGGCTTGCTCGCGAGGATCTGGTGTA----ATATGTTCTTCAT 1183
consensus_6092#1 TGGATGCCAGGATGTCAGGGCTTGCTCGGTGAGACGAGAGACAGGACACACTTGCTTCTT 565
consensus_6092#2 TTCCAACCAAGGT-TGAAAAATGAACTGGTGGTTCAAGGTTTAATATTAACAGGTTTC-- 539
* *** * * * * * * * * * ***
consensus_6092#0 GAACCCTGGGGAAGTAG--GATTTGATTGGAGTGGCAC-ATCCACATAGAAAAAGTGTTT 1240
consensus_6092#1 ACCTCCTCGTGCATCTGTGGATCTGGATATGATGTTAT-GTGAAT-CATAAGTCATG--- 620
consensus_6092#2 GATGTTTAGCACATTCT---ATATTGTAATGAAATTGTTGTAACTTTTTAAAAGATAAAA 596
* * * ** * * ** *
consensus_6092#0 ATGATGTGATGATTCAGAGATTTAGCCTCAAGACAACATTGTAGGATGCAGATTACCATA 1300
consensus_6092#1 ------------------------------------------------------------
consensus_6092#2 AAA--------------------------------------------------------- 599
consensus_6092#0 AACTTGAAAGTGATGGATTGACCTCCTCTTGTGAATAGTGAATTCGTTGCAAATACTTTA 1360
consensus_6092#1 ------------------------------------------------------------
consensus_6092#2 ------------------------------------------------------------
consensus_6092#0 TAGTGGGAGTGGAGGTGTTATCTGAAAGAAGAATAATTCGATTTTTGGGCCACATCGCCA 1420
consensus_6092#1 ------------------------------------------------------------
consensus_6092#2 ------------------------------------------------------------
consensus_6092#0 CGACAATAATATGTCATGTAAAAACACTTTTAAGTTCCAACCAAGGTTGAAAAATGAACT 1480
consensus_6092#1 ------------------------------------------------------------
consensus_6092#2 ------------------------------------------------------------
consensus_6092#0 GGTGGTTCAAGGTTTAATATTAACAGGTTTCGATGTTTAGCACATTCTATATTGTAATGA 1540
consensus_6092#1 ------------------------------------------------------------
consensus_6092#2 ------------------------------------------------------------
consensus_6092#0 AATTGTTGTAACTTTTTAAAAGATAGCTCTTAGTTGTAATGGACTTTTTCATTTTTAAAC 1600
consensus_6092#1 ------------------------------------------------------------
consensus_6092#2 ------------------------------------------------------------
consensus_6092#0 AATATCAATATGAACATCTG 1620
consensus_6092#1 --------------------
consensus_6092#2 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||