cluster # 6099

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Oryza sativa
cluster # 6099 cluster # 6099 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6099#0 length = 303 sequences # 1

consensus_6099#1 length = 228 sequences # 2

consensusID : consensus_6099#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [GCGAGCGGACATGNCAGCATCGCAGCCAAGCCGTGCTACAACTCTGCATTCAATATACANTTTCNACNGCAAGATTCAANTCAGTCTGNGTGANCGNGAGAGAACATCATGATGGGTAAGCTGTTGCCTGCTTCGGCGTTCGCGGAGTCGGAGCCGTCGTGTCGCAGGTGGCAACGTCGGCGGCGCACGGCGAGGACTCGCCGTACTTCGCCGGGTGGAAGGCCTACGACGAGGACCCCTACCACGTCGTCGATAACCCCGACGGCGTCATACAGATGGGCCTCGTCGAGAACCAGGTCTCCT]

[+] EMBL OSS11722A            [GCGAGCGGACATGNCAGCATCGCAGCCAAGCCGTGCTACAACTCTGCATTCAATATACANTTTCNACNGCAAGATTCAANTCAGTCTGNGTGANCGNGAGAGAACATCATGATGGGTAAGCTGTTGCCTGCTTCGGCGTTCGCGGAGTCGGAGCCGTCGTGTCGCAGGTGGCAACGTCGGCGGCGCACGGCGAGGACTCGCCGTACTTCGCCGGGTGGAAGGCCTACGACGAGGACCCCTACCACGTCGTCGATAACCCCGACGGCGTCATACAGATGGGCCTCGTCGAGAACCAGGTCTCCT]




>consensus_6099#0
GCGAGCGGACATGNCAGCATCGCAGCCAAGCCGTGCTACAACTCTGCATTCAATATACAN
TTTCNACNGCAAGATTCAANTCAGTCTGNGTGANCGNGAGAGAACATCATGATGGGTAAG
CTGTTGCCTGCTTCGGCGTTCGCGGAGTCGGAGCCGTCGTGTCGCAGGTGGCAACGTCGG
CGGCGCACGGCGAGGACTCGCCGTACTTCGCCGGGTGGAAGGCCTACGACGAGGACCCCT
ACCACGTCGTCGATAACCCCGACGGCGTCATACAGATGGGCCTCGTCGAGAACCAGGTCT
CCT

consensusID : consensus_6099#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 228
fasta sequence

                              [GCTTGATTGCCTCTTGTACTGCAGTGTTGCTTCCTACACTGCCATTGCATATAAATTTTGCACTGCAAGATTAATTCAGTCTGAGAGAACGAGAGAGAACATCATGGGTGGCAAGCTGTTGCCTGCTGCGGCGTTCGCGGNGTCGGGCCGCCGCTGTCGCAGGTGGCAACGTCGGCGGCGCACGGCGAGGACTCGCCGTACTTCGCCGGGTGGAAGGCCTACGACGAG]

[+] EMBL OSS11757A            [GCTTGATTGCCTCTTGTACTGCAGTGTTGCTTCCTACACTGCCATTGCATATAAATTTTGCACTGCAAGATTAATTCAGTCTGAGAGAACGAGAGAGAACATCATGGGTGGCAAGCTGTTGCCTGCTGCGGCGTTCGCGGNGTCGGGCCGCCGCTGTCGCAGGTGGCAACGTCGGCGGCGCACGGCGAGGACTCGCCGTACTTCGCCGGGTGGAAGGCCTACGACGAG]
[+] EMBL OSS11758A            [GCTTGATTGCCTCTTGTACTGCAGTGTTGCTTCCTACACTGCCATTGCATATAAATTTTGCACTGCAAGATTAATTCAGTCTGAGAGAACGAGAGAGAACATCATGGGTGGCAAGCTGTTGCCTGCTGCGGCGTTCGCCG GTCGGGCCGCCGCTGTCGCAGGTGGCAACGTCGGCGGCGCACGGCGAGGACTCGCCGTACTTCGCCGGGTGGAAG            ]




>consensus_6099#1
GCTTGATTGCCTCTTGTACTGCAGTGTTGCTTCCTACACTGCCATTGCATATAAATTTTG
CACTGCAAGATTAATTCAGTCTGAGAGAACGAGAGAGAACATCATGGGTGGCAAGCTGTT
GCCTGCTGCGGCGTTCGCGGNGTCGGGCCGCCGCTGTCGCAGGTGGCAACGTCGGCGGCG
CACGGCGAGGACTCGCCGTACTTCGCCGGGTGGAAGGCCTACGACGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6099#0      GCGAGCGGACATGNCAGCATCGCAGCCAAGCCGTGCTACAACTCTGCATTCAATATACAN 60
consensus_6099#1      GCTTGATTGCCT-CTTGTACTGCAGTGTTGCT-TCCTACACTGC--CATTGCATATAAAT 56
                      **  *    * *    * *  ****    **  * *****   *  ****  ***** * 

consensus_6099#0      TTTCNACNGCAAGATTCAANTCAGTCTGNGTGANCGNGAGAGAACATCATGATGGGTAAG 120
consensus_6099#1      TTTGCACTGCAAGATT-AATTCAGTCTGAGAGAACGAGAGAGAACATCATGGGTGGCAAG 115
                      ***  ** ******** ** ******** * ** ** **************   ** ***

consensus_6099#0      CTGTTGCCTGCTTCGGCGTTCGCGGAGTCGGAGCCGTCG-TGTCGCAGGTGGCAACGTCG 179
consensus_6099#1      CTGTTGCCTGCTGCGGCGTTCGCGGNGTCGG-GCCGCCGCTGTCGCAGGTGGCAACGTCG 174
                      ************ ************ ***** **** ** ********************

consensus_6099#0      GCGGCGCACGGCGAGGACTCGCCGTACTTCGCCGGGTGGAAGGCCTACGACGAGGACCCC 239
consensus_6099#1      GCGGCGCACGGCGAGGACTCGCCGTACTTCGCCGGGTGGAAGGCCTACGACGAG------ 228
                      ******************************************************      

consensus_6099#0      TACCACGTCGTCGATAACCCCGACGGCGTCATACAGATGGGCCTCGTCGAGAACCAGGTC 299
consensus_6099#1      ------------------------------------------------------------
                                                                                  

consensus_6099#0      TCCT 303
consensus_6099#1      ----