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Oryza sativa
cluster # 6102 cluster # 6102       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6102#0 length = 1386 sequences # 4  

consensusID : consensus_6102#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1386
fasta sequence
                              [CGGCCATTTCGTCCAGGTCTACAGCAACGGCGATGTCTACGAGGGCCAGTTCAACCGCGGCCGCTGCACCGGCAGCGGCGTCTACTACTACTACATGAGTGGCAGGTACGAGGGGGACTGGATCGACGGCAAGTACGACGGCTATGGCGTCGAGACCTGGGCCAGGGGAAGCCGGTACAGGGGCCAGTACCGGCAAGGGCTTAGGCACGGGCACGGCGTATACAGGTTCTACACCGGGGATGTGTACGCCGGAGAATGGTCCAATGGGCAGAGCCATGGGTATGGCGTGCACACCTGCGAGGATGGCAGCCGCTACATTGGGGAATTCAAGAGGGGTGTCAAGCATGGACTTGGCCACTACCATTTCAGGAATGGCGATACCTATGCTGGGGAGTACTTTGCTGATAGAATGCATGGCTTCGGAGTCTACAGTTTTGCCAATGGTCACAGATACGAGGGAGCTTGGCATGAGGGTAGAAGGCAAGGATTAGGCATGTATACTTTCAGGAATGGAGAGACACAAGCAGGCCATTGGCAAAATGGAGTTCTTGACACCTTGAGCACCCAAAACATTATCCCTGGGTCCCCTATAGCTGTGAACCATTCCAAGGTCCTCAATGCAGTGCAGGAGGCGAGAAGAGCTGCAGAGAGGGCCTATGACGTCCCAAGAGTCGACGATAAGGTGAACAGGGCCGTTGCTTCAGCAAATAAAGCAGCCAATGCAGCCA-GGGTGGCTGCTGTGAAGGCTGCAC-AAAAGCGCATGCCAAATAATGGCAATGA-TCTACCGTTGTCAGTAG-TGTGAGAAGGAAAGCCAACATAAGGTTGGCACGAAGCTGCTTCGCGATGTCATCGCGTTGTTACCAATTCGCCCGACACAACCTTCCGCTTCCCTACAGGGGGAAGTTGCTCCACCCCATCGGGCCGTGGCGATACCCTGAGTGACTGCCGTTGCAGCAGAGCTTCGGAACCAGAGTTTTCCGCCATTCCCTCCATACATCTTTTGTGGTGTCTTTTG-CGACGC-AGCAGAACTCCTGCG-CAGAGAG--AGAGAGCTTCCTGTTGTCGAAGGCAACTGATCGAGGTCAGTAGGGTTCTCGTGCTTTCTTTTTTTTCTCTTCTTCAGTGTAATACTCATCCTATGTTTAGAGATACGATGATGTACACACCCCCAACATCAGGAGACAAAATCTCTGTTGCCTTTTGTCTCTTGGCTTTAAGCATGTATAGAACCTACATATTCCACGGTGCCGGCCGTGCTGGTTGGAGGAACCGCATGCCGCCCCCGCCATTGTCTGTACTACTTTGTACCTGAACGCATAAAGATAACCATGACCTTGAATGAATGGAATGCCTCCTGTTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK120574             [CGGCCATTTCGTCCAGGTCTACAGCAACGGCGATGTCTACGAGGGCCAGTTCAACCGCGGCCGCTGCACCGGCAGCGGCGTCTACTACTACTACATGAGTGGCAGGTACGAGGGGGACTGGATCGACGGCAAGTACGACGGCTATGGCGTCGAGACCTGGGCCAGGGGAAGCCGGTACAGGGGCCAGTACCGGCAAGGGCTTAGGCACGGGCACGGCGTATACAGGTTCTACACCGGGGATGTGTACGCCGGAGAATGGTCCAATGGGCAGAGCCATGGGTATGGCGTGCACACCTGCGAGGATGGCAGCCGCTACATTGGGGAATTCAAGAGGGGTGTCAAGCATGGACTTGGCCACTACCATTTCAGGAATGGCGATACCTATGCTGGGGAGTACTTTGCTGATAGAATGCATGGCTTCGGAGTCTACAGTTTTGCCAATGGTCACAGATACGAGGGAGCTTGGCATGAGGGTAGAAGGCAAGGATTAGGCATGTATACTTTCAGGAATGGAGAGACACAAGCAGGCCATTGGCAAAATGGAGTTCTTGACACCTTGAGCACCCAAAACATTATCCCTGGGTCCCCTATAGCTGTGAACCATTCCAAGGTCCTCAATGCAGTGCAGGAGGCGAGAAGAGCTGCAGAGAGGGCCTATGACGTCCCAAGAGTCGACGATAAGGTGAACAGGGCCGTTGCTTCAGCAAATAAAGCAGCCAATGCAGCCA GGGTGGCTGCTGTGAAGGCTGCAC AAAAGCGCATGCCAAATAATGGCAATGA TCTACCGTTGTCAGTAG TGTGAGAAGGAAAGCCAACATAAGGTTGGCACGAAGCTGCTTCGCGATGTCATCGCGTTGTTACCAATTCGCCCGACACAACCTTCCGCTTCCCTACAGGGGGAAGTTGCTCCACCCCATCGGGCCGTGGCGATACCCTGAGTGACTGCCGTTGCAGCAGAGCTTCGGAACCAGAGTTTTCCGCCATTCCCTCCATACATCTTTTGTGGTGTCTTTTG CGACGC AGCAGAACTCCTGCG CAGAGAG  AGAGAGCTTCCTGTTGTCGAAGGCAACTGATCGAGGTCAGTAGGGTTCTCGTGCTTTC TTTTTTTCTCTTCTTCAGTGTAATACTCATCCTATGTTTAGAGATACGATGATGTACACACCCCCAACATCAGGAGACAAAATCTCTGTTGCCTTTTGTCTCTTGGCTTTAAGCATGTATAGAACCTACATATTCCACGGTGCCGGCCGTGCTGGTTGGAGGAACCGCATGCCGCCCCCGCCATTGTCTGTACTACTTTGTACCTGAACGCATAAAGATAACCATG                                                          ]
[+] EMBL AA752408             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             cgaATGACGTCCCAAG GTCGACGATAAGGTGAACAGGGCCGTTGCTTCAGCAAATTAAGCAGCCAATGCAGCCAGGGGTGGCTGCTGTGAAAGCTGCACAAAAAGCGCATGCCAAATAATGGCAATGASTCTACCGTTGTCANTAGATGTGAGAAGGAAASCCACCATAAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU097641             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CTCCACCCCATCGGGCCGTGGCGATACCCTGAGTGACTGCCGTTGCAGCAGAGCTTCGGAACCAGAGTTTTCCGCCATTCCCTCCATACATCTTTTGTGGTGTCTTTTGCCGACGCNAGCAGAACTCCTGCGCCAGAGAGNAAGAGAGCTTCCTGTTGTCGAAGGCAACTGATCGAGGTCAGTAGGGTTCTCGTGCTTTCTTTTTTTTCTCTTCTTCAGTGTAATACTCATCCTATGTTTAGAGATACGATGATGTACACACCCCCAACATCAGGAGACAAAATCTCTGTTGCCTTTTGTCTCTTGGCTTTAAGCATGTATAGAACCTACATATTCCACGGTGCCGGCCGTGCTGGTTGGAGGAACCGCATGCCGCCCCCGCCATTGTCTGTACTACTTTGTACCTGAACGCATAAAGATAACCATGACCTTGAATGAATGGAATGCCTCCTGTTGTTTTAA                       ]
[+] EMBL AU058097             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCTTTTGTGGTGTCTTTTG CGACGC AGCAGAACTCCTGCG CAGAGAG  AGAGAGCTTCCTGTTGTCGAAGGCAACTGAACGAGGTCAGTAGGGTTCTCGTGCTTTCTTTTTTTTCTCTTCTTCAGTGTAATACTCATCCTATGTTTAGAGATACGATGATGTACACACCCCCAACATCAGGAGACAAAATCTCTGTTGCCTTTTGTCTCTTGGCTTTAAGCATGTATAGAACCTACATATTCCACGGTGCCGGCCGTGCTGGTTGGAGGAACCGCATGCCGCCCCCNNCATTGTCTGTACTACTTTGTACCTGAACGCATAAAGATAACCATGACCTTGAATGAATGGAATGCCTCCTGTTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_6102#0 CGGCCATTTCGTCCAGGTCTACAGCAACGGCGATGTCTACGAGGGCCAGTTCAACCGCGG CCGCTGCACCGGCAGCGGCGTCTACTACTACTACATGAGTGGCAGGTACGAGGGGGACTG GATCGACGGCAAGTACGACGGCTATGGCGTCGAGACCTGGGCCAGGGGAAGCCGGTACAG GGGCCAGTACCGGCAAGGGCTTAGGCACGGGCACGGCGTATACAGGTTCTACACCGGGGA TGTGTACGCCGGAGAATGGTCCAATGGGCAGAGCCATGGGTATGGCGTGCACACCTGCGA GGATGGCAGCCGCTACATTGGGGAATTCAAGAGGGGTGTCAAGCATGGACTTGGCCACTA CCATTTCAGGAATGGCGATACCTATGCTGGGGAGTACTTTGCTGATAGAATGCATGGCTT CGGAGTCTACAGTTTTGCCAATGGTCACAGATACGAGGGAGCTTGGCATGAGGGTAGAAG GCAAGGATTAGGCATGTATACTTTCAGGAATGGAGAGACACAAGCAGGCCATTGGCAAAA TGGAGTTCTTGACACCTTGAGCACCCAAAACATTATCCCTGGGTCCCCTATAGCTGTGAA CCATTCCAAGGTCCTCAATGCAGTGCAGGAGGCGAGAAGAGCTGCAGAGAGGGCCTATGA CGTCCCAAGAGTCGACGATAAGGTGAACAGGGCCGTTGCTTCAGCAAATAAAGCAGCCAA TGCAGCCAGGGTGGCTGCTGTGAAGGCTGCACAAAAGCGCATGCCAAATAATGGCAATGA TCTACCGTTGTCAGTAGTGTGAGAAGGAAAGCCAACATAAGGTTGGCACGAAGCTGCTTC GCGATGTCATCGCGTTGTTACCAATTCGCCCGACACAACCTTCCGCTTCCCTACAGGGGG AAGTTGCTCCACCCCATCGGGCCGTGGCGATACCCTGAGTGACTGCCGTTGCAGCAGAGC TTCGGAACCAGAGTTTTCCGCCATTCCCTCCATACATCTTTTGTGGTGTCTTTTGCGACG CAGCAGAACTCCTGCGCAGAGAGAGAGAGCTTCCTGTTGTCGAAGGCAACTGATCGAGGT CAGTAGGGTTCTCGTGCTTTCTTTTTTTTCTCTTCTTCAGTGTAATACTCATCCTATGTT TAGAGATACGATGATGTACACACCCCCAACATCAGGAGACAAAATCTCTGTTGCCTTTTG TCTCTTGGCTTTAAGCATGTATAGAACCTACATATTCCACGGTGCCGGCCGTGCTGGTTG GAGGAACCGCATGCCGCCCCCGCCATTGTCTGTACTACTTTGTACCTGAACGCATAAAGA TAACCATGACCTTGAATGAATGGAATGCCTCCTGTTGTTTTAAAAAAAAAAAAAAAAAAA AAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)