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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1638 fasta sequence
[CCCTTCGTCGAGCCGCCGCCGCCGCCGCCGATCCTTCTCCTCCCACCTCGCCCGCGCCGATGGAGCAGCTCAACGCCAAGCTCTACGACAAGTACACCGCCCTCAAGAAGCGGAAGCTGCTCGACGAGGGGCTGGACCAGAAGCGGGCTGCCGACATCAAGGAGCTCCAGCAAGCCATGAAAGATTGGGTCGCCGACCTCCAGGGCGAGAACGAGCGCCTCATTGCCAAGCTGACCCAAAAGGAGCAGCAGCTTGTGGAGGTCCAGACACTTTTGCTCGATGAGACTAGGAAGACAAAGGAGCTCAATAGTGAAATATTGAAGCTTCAGTGTCTCCTGGCTGAGAAGAATGATGCAAACCATATAGCTACAGGGTCTCCTGACACAACCGCTGAAATGATTATAGAAAATCAAACTCCAATTCCACCTGCAAAGAAGACACCAAAGTCAAAGAGCAGGGAGAGAAATATCCACTTCATTGAAAAAGCGACTGTTCCTTGTAATGGCTTTCAGGAGGAAGGAAGAGATCTTGATTCCTGTAGAAGGCATATGAGCATCTCAGGTTAGTGGTAATATACACACATGCAGTAGTGAATTGTTTGAACTTAAAAGTATGTTGTTTGCAGGGAGTGCGACAGAAGAAAGCTCCAGTACCTGTATGTTTCATATGCTGGCTGAATCAGTAGTTGGGATGAAATTTTCAGTGAAGAACCAAACAGAAGGATTTTCACTTTCAGTCTCCCATGAAGCTAGTGGTATTTGGAACATCAAATTTTATGCTATTATTTTAGCCACAGCATAGTACTGGAATATCTCATCATAGTTATTATTCATCATGTTTTACTTGTGTTCATTTCTCTTTCACATTCATTTGATTTTGCATATAGCCACCTCCATGTTTGCCAAGCTAGCTGAGTATTCAAGCAAACAGTTATGCAAAGAACAATCTTCAACCTGAAAAATGTCCTTTAAACCACCAGAAGAGTTGTGTGAATACATATTTTAATGCTTTAATATCTTTGTCAAGCATGTACACATCTCTTTGGAGCTTAGCCGTTTGTAGCAGAACTTGTATACCAGCATACAGTGTAGTTACATGTTGGGTGCAGAACCTGAGGATCATGTCACCAATGTTAGAACATTTGATTTGTAAAGATCATAATCAAGTGTAAGGAACGAATTACATTTCTAACTGAATTTTTTAAACTGTTGTAGGCTACAGTTTCACCCTGACATGGGTAGACCAACCTGGTGGCGGTGAATGGTCATATCAGTACTCGTCGTTGGGCACCCTGGACAGGATTGCTATGGGCTGGATGAAGGAGGACATAAAATTCAGCAGGGCCATGTGTCCTGTATTCTTTCAGCAGATATCGCGCATCCTCAGACAAGGCTAAGCTCAACTGGGAAGCTTAGTTTGGATTTTAGAGGTCCTGACTTTTGCTAGACAGTGGACTGAAACTGACTTGTTTTAGGAGTGACACGAGGCTTTATGTATCCTTTCGTTTGGCCTTTGTTGTTCCTGTTGTGAACATAACAATTAGCAAGTGATTCGAGATGTTGGTCGCCTGGTTGCCGTATGTCTTTATGTATAGCCCCTGATTTGAACTCTGATGGTTCTGAAAATAAGAGCTTCGAC]
[+] EMBL AK100982 [CCCTTCGTCGAGCCGCCGCCGCCGCCGCCGATCCTTCTCCTCCCACCTCGCCCGCGCCGATGGAGCAGCTCAACGCCAAGCTCTACGACAAGTACACCGCCCTCAAGAAGCGGAAGCTGCTCGACGAGGGGCTGGACCAGAAGCGGGCTGCCGACATCAAGGAGCTCCAGCAAGCCATGAAAGATTGGGTCGCCGACCTCCAGGGCGAGAACGAGCGCCTCATTGCCAAGCTGACCCAAAAGGAGCAGCAGCTTGTGGAGGTCCAGACACTTTTGCTCGATGAGACTAGGAAGACAAAGGAGCTCAATAGTGAAATATTGAAGCTTCAGTGTCTCCTGGCTGAGAAGAATGATGCAAACCATATAGCTACAGGGTCTCCTGACACAACCGCTGAAATGATTATAGAAAATCAAACTCCAATTCCACCTGCAAAGAAGACACCAAAGTCAAAGAGCAGGGAGAGAAATATCCACTTCATTGAAAAAGCGACTGTTCCTTGTAATGGCTTTCAGGAGGAAGGAAGAGATCTTGATTCCTGTAGAAGGCATATGAGCATCTCAGGTTAGTGGTAATATACACACATGCAGTAGTGAATTGTTTGAACTTAAAAGTATGTTGTTTGCAGGGAGTGCGACAGAAGAAAGCTCCAGTACCTGTATGTTTCATATGCTGGCTGAATCAGTAGTTGGGATGAAATTTTCAGTGAAGAACCAAACAGAAGGATTTTCACTTTCAGTCTCCCATGAAGCTAGTGGTATTTGGAACATCAAATTTTATGCTATTATTTTAGCCACAGCATAGTACTGGAATATCTCATCATAGTTATTATTCATCATGTTTTACTTGTGTTCATTTCTCTTTCACATTCATTTGATTTTGCATATAGCCACCTCCATGTTTGCCAAGCTAGCTGAGTATTCAAGCAAACAGTTATGCAAAGAACAATCTTCAACCTGAAAAATGTCCTTTAAACCACCAGAAGAGTTGTGTGAATACATATTTTAATGCTTTAATATCTTTGTCAAGCATGTACACATCTCTTTGGAGCTTAGCCGTTTGTAGCAGAACTTGTATACCAGCATACAGTGTAGTTACATGTTGGGTGCAGAACCTGAGGATCATGTCACCAATGTTAGAACATTTGATTTGTAAAGATCATAATCAAGTGTAAGGAACGAATTACATTTCTAACTGAATTTTTTAAACTGTTGTAGGCTACAGTTTCACCCTGACATGGGTAGACCAACCTGGTGGCGGTGAATGGTCATATCAGTACTCGTCGTTGGGCACCCTGGACAGGATTGCTATGGGCTGGATGAAGGAGGACATAAAATTCAGCAGGGCCATGTGTCCTGTATTCTTTCAGCAGATATCGCGCATCCTCAGACAAGGCTAAGCTCAACTGGGAAGCTTAGTTTGGATTTTAGAGGTCCTGACTTTTGCTAGACAGTGGACTGAAACTGACTTGTTTTAGGAGTGACACGAGGCTTTATGTATCCTTTCGTTTGGCCTTTGTTGTTCCTGTTGTGAACATAACAATTAGCAAGTGATTCGAGATGTTGGTCGCCTGGTTGCCGTATGTCTTTATGTATAGCCCCTGATTTGAACTCTGATGGTTCTGAAAATAAGAGCTTCGAC]
consensusID : consensus_6115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence
[CACCTGCAAAGAAGACACCAAAGTCAAAGAGCAGGGAGAGAAATATCCACTTCATTGAAAAAGCGACTGTTCCTTGTAATGGCTTTCAGGAGGAAGGAAGAGATCTTGATTCCTGTAGAAGGCATATGAGCATCTCAGGGAGTGCTTCAGAAGAAAGCTCCAGTACCTGTATGTTTCATATGCTGGCTGAATCAGTAATTGGGATGAAATTTTCAGTGAAGAACCAAACAGAAGGATTTTCACTTTCAGTCTCCCATGAAGCTAGTGGCTACAGTTTCACCCTGACATGGGTAGACCAACCTGGTGGCGGTGAATGGTCATATCAGTACTCGTCGTTGGGCACCCTGGACAGGATTGCTATGGGCTGGATGAAGGAGGACATAAAATTCAGTAGGGCCATGTGTCCTGTATTCTTTCAGCAGATATCGCGCATCCTCAGACAAGGCTAAGCTCAACTGGGAAGCTTAGTTTGGATTTTAGAGGTCCTGACTTCTGCTAGACAGTGGACTGAAACTGACTTGTTTTAGGAGTGACACGGGGCTTTATGTATCCTTTCGTTTGGCCTTTGTTGTTCCTGTTGTGAACATAACAATTAGCAAGTGATTCGAGATGTTGGTCGCCTGGTTGCCGTATGTCTTTATGTATAGCCCC]
[+] EMBL BE039585 [CACCTGCAAAGAAGACACCAAAGTCAAAGAGCAGGGAGAGAAATATCCACTTCATTGAAAAAGCGACTGTTCCTTGTAATGGCTTTCAGGAGGAAGGAAGAGATCTTGATTCCTGTAGAAGGCATATGAGCATCTCAGGGAGTGCTTCAGAAGAAAGCTCCAGTACCTGTATGTTTCATATGCTGGCTGAATCAGTAATTGGGATGAAATTTTCAGTGAAGAACCAAACAGAAGGATTTTCACTTTCAGTCTCCCATGAAGCTAGTGGCTACAGTTTCACCCTGACATGGGTAGACCAACCTGGTGGCGGTGAATGGTCATATCAGTACTCGTCGTTGGGCACCCTGGACAGGATTGCTATGGGCTGGATGAAGGAGGACATAAAATTCAGTAGGGCCATGTGTCCTGTATTCTTTCAGCAGATATCGCGCATCCTCAGACAAGGCTAAGCTCAACTGGGAAGCTTAGTTTGGATTTTAGAGGTCCTGACTTCTGCTAGACAGTGGACTGAAACTGACTTGTTTTAGGAGTGACACGGGGCTTTATGTATCCTTTCGTTTGGCCTTTGTTGTTCCTGTTGTGAACATAACAATTAGCAAGTGATTCGAGATGTTGGTCGCCTGGTTGCCGTATGTCTTTATGTATAGCCCC]
consensusID : consensus_6115#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 129 fasta sequence
[GCTGGATTCATGAAAGTGGCTGAAACTGACTTGTTTTGAGGAGTGACACGAGGCTTTATGTATCCTTTCGTTTGGCCTTTGTTGTTCCTGTTGTGAACATAACAATTAGCAAGTGATTCGAGATGTTGG]
[-] EMBL CB965081 [GCTGGATTCATGAAAGTGGCTGAAACTGACTTGTTTTGAGGAGTGACACGAGGCTTTATGTATCCTTTCGTTTGGCCTTTGTTGTTCCTGTTGTGAACATAACAATTAGCAAGTGATTCGAGATGTTGG]
[-] EMBL CB965459 [GCTGGATTCATGAAAGTGGCTGAAACTGACTTGTTTT AGGAGTGACACGAGGCTTTATGTATCCTTTCGTTTGGCCTTTGTTGTTCCTGTTGTGAACATAACAATTAGCAAGTGATTCGAGATGTTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6115#0 CCCTTCGTCGAGCCGCCGCCGCCGCCGCCGATCCTTCTCCTCCCACCTCGCCCGCGCCGA 60
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 TGGAGCAGCTCAACGCCAAGCTCTACGACAAGTACACCGCCCTCAAGAAGCGGAAGCTGC 120
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 TCGACGAGGGGCTGGACCAGAAGCGGGCTGCCGACATCAAGGAGCTCCAGCAAGCCATGA 180
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 AAGATTGGGTCGCCGACCTCCAGGGCGAGAACGAGCGCCTCATTGCCAAGCTGACCCAAA 240
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 AGGAGCAGCAGCTTGTGGAGGTCCAGACACTTTTGCTCGATGAGACTAGGAAGACAAAGG 300
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 AGCTCAATAGTGAAATATTGAAGCTTCAGTGTCTCCTGGCTGAGAAGAATGATGCAAACC 360
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 ATATAGCTACAGGGTCTCCTGACACAACCGCTGAAATGATTATAGAAAATCAAACTCCAA 420
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 TTCCACCTGCAAAGAAGACACCAAAGTCAAAGAGCAGGGAGAGAAATATCCACTTCATTG 480
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 AAAAAGCGACTGTTCCTTGTAATGGCTTTCAGGAGGAAGGAAGAGATCTTGATTCCTGTA 540
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 GAAGGCATATGAGCATCTCAGGTTAGTGGTAATATACACACATGCAGTAGTGAATTGTTT 600
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 GAACTTAAAAGTATGTTGTTTGCAGGGAGTGCGACAGAAGAAAGCTCCAGTACCTGTATG 660
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 TTTCATATGCTGGCTGAATCAGTAGTTGGGATGAAATTTTCAGTGAAGAACCAAACAGAA 720
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 GGATTTTCACTTTCAGTCTCCCATGAAGCTAGTGGTATTTGGAACATCAAATTTTATGCT 780
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 ATTATTTTAGCCACAGCATAGTACTGGAATATCTCATCATAGTTATTATTCATCATGTTT 840
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 TACTTGTGTTCATTTCTCTTTCACATTCATTTGATTTTGCATATAGCCACCTCCATGTTT 900
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 ------------------------------------------------------------
consensus_6115#0 GCCAAGCTAGCTGAGTATTCAAGCAAACAGTTATGCAAAGAACAATCTTCAACCTGAAAA 960
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 -----------------CACCTGCAAAGAAG-ACACCAAAGTCAAAGAGCAGGGAGAGAA 42
consensus_6115#0 ATGTCCTTTAAACCACCAGAAGAGTTGTGTGAATACATATTTTAATG-CTTTAATATCTT 1019
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 ATATCCACT---TCATTGAAAAAGC-----GACTGTTCCTTGTAATGGCTTTCAGGAGGA 94
consensus_6115#0 TGTCAAGCATGTACACATCTCTTTGGAGCTTAGCCGTTTGTAGCAGAACTTGTATACCAG 1079
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 AGGAAGAGATCTTGATTCCTGTAGAAGGCATATGAGCATCTCAGGGA----GTGCTTCAG 150
consensus_6115#0 CATACAGTGTAGTTACATGTTGGGTGCAGAACCTGAGGATCATGTCACCAATGTTAGAAC 1139
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 AAGAAAGCTCCAGTACCTGTATGTTTCATATGCT---GGCTGAATCAGTAA--TTGGGA- 204
consensus_6115#0 ATTTGATTTGTAAAGATCATAATCAAGTGTAAGGAACGAATTACATTTCTAACTGAATTT 1199
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 -TGAAATTTTCAGTGA--AGAACCAA----ACAGAAGGATTTTCACTT-----TCAGTCT 252
consensus_6115#0 TTTAAACTGTTGTAGGCTACAGTTTCACCCTGACATGGGTAGACCAACCTGGTGGCGGTG 1259
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 CCCATGAAGCTAGTGGCTACAGTTTCACCCTGACATGGGTAGACCAACCTGGTGGCGGTG 312
consensus_6115#0 AATGGTCATATCAGTACTCGTCGTTGGGCACCCTGGACAGGATTGCTATGGGCTGGATGA 1319
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 AATGGTCATATCAGTACTCGTCGTTGGGCACCCTGGACAGGATTGCTATGGGCTGGATGA 372
consensus_6115#0 AGGAGGACATAAAATTCAGCAGGGCCATGTGTCCTGTATTCTTTCAGCAGATATCGCGCA 1379
consensus_6115#2 ------------------------------------------------------------
consensus_6115#1 AGGAGGACATAAAATTCAGTAGGGCCATGTGTCCTGTATTCTTTCAGCAGATATCGCGCA 432
consensus_6115#0 TCCTCAGACAAGGCTAAGCTCAACTGGGAAGCTTAGTTTGGATTTTAGAGGTCCTGACTT 1439
consensus_6115#2 ----------------------------------------------------GCTGGATT 8
consensus_6115#1 TCCTCAGACAAGGCTAAGCTCAACTGGGAAGCTTAGTTTGGATTTTAGAGGTCCTGACTT 492
*** **
consensus_6115#0 TTGCTAGACAGTGGACTGAAACTGACTTGTTTT-AGGAGTGACACGAGGCTTTATGTATC 1498
consensus_6115#2 ---CATGAAAGTGG-CTGAAACTGACTTGTTTTGAGGAGTGACACGAGGCTTTATGTATC 64
consensus_6115#1 CTGCTAGACAGTGGACTGAAACTGACTTGTTTT-AGGAGTGACACGGGGCTTTATGTATC 551
* ** ***** ****************** ************ *************
consensus_6115#0 CTTTCGTTTGGCCTTTGTTGTTCCTGTTGTGAACATAACAATTAGCAAGTGATTCGAGAT 1558
consensus_6115#2 CTTTCGTTTGGCCTTTGTTGTTCCTGTTGTGAACATAACAATTAGCAAGTGATTCGAGAT 124
consensus_6115#1 CTTTCGTTTGGCCTTTGTTGTTCCTGTTGTGAACATAACAATTAGCAAGTGATTCGAGAT 611
************************************************************
consensus_6115#0 GTTGGTCGCCTGGTTGCCGTATGTCTTTATGTATAGCCCCTGATTTGAACTCTGATGGTT 1618
consensus_6115#2 GTTGG------------------------------------------------------- 129
consensus_6115#1 GTTGGTCGCCTGGTTGCCGTATGTCTTTATGTATAGCCCC-------------------- 651
*****
consensus_6115#0 CTGAAAATAAGAGCTTCGAC 1638
consensus_6115#2 --------------------
consensus_6115#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||