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Oryza sativa
cluster # 6132 cluster # 6132       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6132#0 length = 701 sequences # 4  

consensusID : consensus_6132#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 701
fasta sequence
                              [TTCTATCTTCTCTTCTCTTCGCTATCGCCGGTCATGGCCACTAGCGGCGACCATCTCCATCTCCGTCGGCCAGATCAGGCTAGCTGCAAGTCCTGCTCCTCCCTCTCTTCTTCAGCAAGGGGTCGCCAAGAGCTCTCCGCCGGCGGATCCGGAGGGCATGAGCTCGCCACTGCCAGATCTACCTGCACAGAGATGTCGAAGCATGAGCTTGGCTTGAGCTCGTCGCCGTCGCCAGCGGCACCACCTTCCTCGCCGGCTTGAGCTCGTCGCTGCGCGGACACCCTCGCCGCCACGGACAGCTACCTCAAATCCATCTCCTACTCACC--TTTTTTTTTCGCCAAATTCAGAGGTTAGAAGCTCGGGCCTGCCAGATCCGAGTAGCCACAACACCCTCCCGGCCGCTGGACTCGCTGCACCGACGGCGGCGAACATGCCTAGCTGGGTGGCACGAGCGGCTAGGTACCGGCGGCGGCAAGTTCCTCTGCGAGCTCTGTTCTCCTTTTT-------TTTCTTTCTTTTTTCCACCGAATGTCATTAACCACTGATAAATATGGTTTATGTACTTCTGTGCAACTGTATATGCTCATCCGATACTGTTTTCAATTATTGTTGTCAGGAGCTCCGAAATCAATGCTTTGTATATTTTGCATGTACTATTAAATCTGATATATATACCATAAATAAATACGCTTTTATTTCGACGG]

[+] EMBL AK120930             [TTCTATCTTCTCTTCTCTTCGCTATCGCCGGTCATGGCCACTAGCGGCGACCATCTCCATCTTCGCCGGCCAGATCAGGCTAGCTGCAAGTCCTGCTCCTCCCTCTCTTCTTCAGCAAGGGCTCACCAAGAGCTCTCCGCCGGCGGATCCGGAGGGCATGAGCTCGCCACTGCCAGATCTACCTGCACGGAGATGTCGAAGTATGAGCTTGGCTTAAGCTCGTCGTCGTCGCCAGCGGCACCACTTTCCTCGCCGGCTTGAGCTCGTCGCTGCGCGGACACCCTCGCCGCCACGGACAGCTACCTCAAATCCATCTCCTACTCACC  TTTTTTTTTCGCCAGATTCAGAGGTTAGAAGCTCGGGCCTGCCAGATCCGAGTAACCACAACACCCTCCCGGCCGCTGGACCCGCTGCACCGACGGCGGCGAACATGCCTAGCTGGGTGGCACGAGCGGCTAGGTACCGGTGGCGGCAAGTTCCTCTGCGAGCTCTGTTCTCCCTTTT       TTTCTTTCTTTTTTCCACCGAATGTCATTAACCACTGATAAATATGGTTTATGTACTGCTGTGCAACTGTATATGCTCATCCGATACTGTTTTCAATTATTGTTGTCAGGAGCTCCGAAATCAATGCTTTGTATATTTTGCATGTACTATTAAATCTGATATATATACCATAAATAAATACGCTT            ]
[-] EMBL AK105319             [                             GGTCATGGCCACCAGCGACGACCATCTCCATCTCCGTCGGCCAGATCAGGCTAGCTGCAAGTCCTGCTCCTCCCTCTCTTCTTCAGCAAGGGGTCGCCAAGAGCTCTCCGCCGGCGGATCCGGAGGGCATGAGCTCGCCACTGCCAGATCTACCTGCACAGAGATGTCGAAGCATGAGCTTGGCTTGAGCTCGTCGCCGTCGCCAGCGGCACCACCTTCCTCGCCGGCTTGAGCTCGTCGCTGCGCGGACACCCTCGCCGCCACGGACAGCTACCTCAAATCCATCTCCTACTCACCTTTTTTTTTTTCGCCAAATTCAGAGGTTAGAAGCTCGGGCCTGCCAGATCCGAGTAGCCACAACACCCTCCCGGCCGCTGGACTCGCTGCACCGACGGCGGCGAACATGCCTAGCTGGGTGGCACGAGCGGCTAGGTACCGGCGGCGGCAAGTTCCTCTGCGAGCTCTGTTCTCCTTTTT       TTTtt                                                                                                                                                                                                ]
[+] EMBL BE607492             [                                                 ACCATCTCCATCTCCGTCGGCCAGATCAGGCTAGCTGCAAGTCCTGCTCCTCCCTCTCTTCTTCAGCAAGGGGTCGCCAAGAGCTCTCCGCCGGCGGATCCGGAGGGCATGAGCTCGCCACTGCCAGATCTACCTGCACAGAGATGTCGAAGCATGAGCTTGGCTTGAGCTCGTCGCCGTCGCCAGCGGCACCACCTTCCTCGCCGGCTTGAGCTCGTCGCTGCGCGGACACCCTCGCCACCACGGACAGCTACCTCAAATCCATCTCCTACTCACC  TTTTTTTTTCGCCAAATTCAGAGGTTAGAAGCTCGGGCCTGCCAGATCCGAGTAGCCACAACACCCTCCCGGCCGCTGGACTCGCTGCACCGACGGCGGCGAACATGCCTAGCTGGGTGGCACGAGCGGCTAGGTACCGGCGGCGGCAAGTTCCTCTGCGAGCTCTGTTCTCCTTTTTTTTTC  TTTCTTTCTTTTTTCCACCGAATGTCATTAACCACTGATAAATATGGTTTATGTACTTCTGTGCAACTGTATATGCTCATCCGATATTG                                                                                                            ]
[+] EMBL BQ908623             [                                                                                                                                                                                                                                                                                                    CGGACAGCTACCTCAAATCCATCTCCTACTCACC  TTTTTTTTTCCCCCAATTCAGAGGTTAGAAGCTCGGGCCTGCCAGATCCGAGTAGCCNCAACACCCTCCCGGCCGCTGGACTCGCTGCACCGACGGCGGCGAACATGCCTAGCTGGGTGGCACGAGCGGCTAGGTACCGGCGGCGGCAAGTTCCTCTGCGAGCTCTGTTCTCCTTTTTTTTTTTCTTTCTTTCTTTTTTCCACCGAATGTCATTAACCACTGATAAATATGGTTTATGTACTTCTATGCAACTGTATATGCTCATCCGATACTGTTTTCAATTATTGTTGTTAGGAGCTCCGAAATCAATGCTTTGTATATTTTGCATGTACTATTAAATCTGATATATATACCATAAATAAATACGCTTTTATTTCGACGG]


>consensus_6132#0 TTCTATCTTCTCTTCTCTTCGCTATCGCCGGTCATGGCCACTAGCGGCGACCATCTCCAT CTCCGTCGGCCAGATCAGGCTAGCTGCAAGTCCTGCTCCTCCCTCTCTTCTTCAGCAAGG GGTCGCCAAGAGCTCTCCGCCGGCGGATCCGGAGGGCATGAGCTCGCCACTGCCAGATCT ACCTGCACAGAGATGTCGAAGCATGAGCTTGGCTTGAGCTCGTCGCCGTCGCCAGCGGCA CCACCTTCCTCGCCGGCTTGAGCTCGTCGCTGCGCGGACACCCTCGCCGCCACGGACAGC TACCTCAAATCCATCTCCTACTCACCTTTTTTTTTCGCCAAATTCAGAGGTTAGAAGCTC GGGCCTGCCAGATCCGAGTAGCCACAACACCCTCCCGGCCGCTGGACTCGCTGCACCGAC GGCGGCGAACATGCCTAGCTGGGTGGCACGAGCGGCTAGGTACCGGCGGCGGCAAGTTCC TCTGCGAGCTCTGTTCTCCTTTTTTTTCTTTCTTTTTTCCACCGAATGTCATTAACCACT GATAAATATGGTTTATGTACTTCTGTGCAACTGTATATGCTCATCCGATACTGTTTTCAA TTATTGTTGTCAGGAGCTCCGAAATCAATGCTTTGTATATTTTGCATGTACTATTAAATC TGATATATATACCATAAATAAATACGCTTTTATTTCGACGG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)