These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 810 fasta sequence [CACTCCCACTCTCACTGACTCACACCCCGTCACTCCCCTCTTCTCCTCACCTCGCCTCGCCGCGCCGCGCCGCGCGCTGAAGAGGAGGCATGAAGCGGACGAGAGCGCAGCAGCCGAAGCTCCAGGAGGGGCAGGACGGCGGCGGCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGGAGGGCGAAGCAGCCGAGGCAGCCCAAGGCGGCGTCGGCGGCAGCCAAGAAGGCGGCGGCGGCGGCGGCGGCGCGCGAGTCGTCGTCGTCGTCTGTGGGGGCGGGGGCGGCAGTGACATCCGCGGCGTCCTCCTCCTGCTCCTCCGGAGCGGACATGGCGCCCACCGTGCCCGACGTGTGTGGCGGCGGCGGCGGCGGCGCGGGATACGAGGCCGGGGCGGCGACCACCGTCGAGTGGGACCTCGACGGCGGGCTCAGCAACGGGTTGTCGTGGTGGACGTTCGGGGTGGAGGAGGAGAAGCTGCTGGGGTGGTTCCCCTTCGTGGAGGAGGACTTCCGCTGCCTCGGCGCCCGCGGCGACGCCGAGATGGCCTTCGACGACGACATTTGGAGGATCCACCAAATCTACGAGATACCCAATTACGCCGCCAAGTGATCGATCGGATTCATCTTTGGTTTTTTCCCCTAGATTACTTGGTAGTAATTGTTGCGTGGTACAGGAATCAATGTCGAGTGCGTAGCCAACAATGTGTTGACGAGGTTAGCTAGCTGGAGTAGCTGATGATGTGGTGGCATCTCAATTCCCAGATTGCAAATTGCTGCAATTCCAAATGCCCCTTCTTTGCAAAAAA] [+] EMBL AK105373 [CACTCCCACTCTCACTGACTCACACCCCGTCACTCCCCTCTTCTCCTCACCTCGCCTCGCCGCGCCGCGCCGCGCGCTGAAGAGGAGGCATGAAGCGGACGAGAGCGCAGCAGCCGAAGCTCCAGGAGGGGCAGGACGGCGGCGGCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGGAGGGCGAAGCAGCCGAGGCAGCCCAAGGCGGCGTCGGCGGCAGCCAAGAAGGCGGCGGCGGCGGCGGCGGCGCGCGAGTCGTCGTCGTCGTCTGTGGGGGCGGGGGCGGCAGTGACATCCGCGGCGTCCTCCTCCTGCTCCTCCGGAGCGGACATGGCGCCCACCGTGCCCGACGTGTGTGGCGGCGGCGGCGGCGGCGCGGGATACGAGGCCGGGGCGGCGACCACCGTCGAGTGGGACCTCGACGGCGGGCTCAGCAACGGGTTGTCGTGGTGGACGTTCGGGGTGGAGGAGGAGAAGCTGCTGGGGTGGTTCCCCTTCGTGGAGGAGGACTTCCGCTGCCTCGGCGCCCGCGGCGACGCCGAGATGGCCTTCGACGACGACATTTGGAGGATCCACCAAATCTACGAGATACCCAATTACGCCGCCAAGTGATCGATCGGATTCATCTTTGGTTTTTTCCCCTAGATTACTTGGTAGTAATTGTTGCGTGGTACAGGAATCAATGTCGAGTGCGTAGCCAACAATGTGTTGACGAGGTTAGCTAGCTGGAGTAGCTGATGATGTGGTGGCATCTCAATTCCCAGATTGCAAATTGCTGCAATTCCAAATGCC ] [+] EMBL AU076136 [ CCTCGCCGCGCCGCGCCGCGCGCTGAAGAGGAGGCATGAAGCGGACGAGAGCGCAGCAGCCGAAGCTCCAGGAGGGGCAGGACGGCGGCGGCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGGAGGGCGAAGCAGCCGAGGCAGCCCAAGGCGGCGTCGGCGGCAGCCAAGAAGGCGGCGGCGGCGGCGGCGGCGCGCGAGTCGTCGTCGTCGTCTGTGGGGGCGGNGGCGGCAGTGACATCCGCGGCGTCCTCCTCCTGCTCCTCCGGAGCGGACATGGCGCCCACCGTGCCCGACGTGTGTGGCGGCGGCGGCGGCGGCGCGGGATACGAGGC ] [+] EMBL AU076137 [ ATACGAGGCCGGGGCGGCGACCACCGTCGAGTGGGACCTCGACGGCGGGCTCAGCAACGGGTTGTCGTGGTGGACGTTCGGGGTGGAGGAGGAGAAGCTGCTGGGGTGGTTCCCCTTCGTGGAGGAGGACTTCCGCTGCCTCGGCGCCCGCGGCGACGCCGAGATGGCCTTCGACGACGACATTTGGAGGATCCACCAAATCTACGAGATACCCAATTACGCCGCCAAGTGATCGATCGGATTCATCTTTGGTTTTTTCCCCTAGATTACTTGGTAGTAATTGTTGCGTGGTACAGGAATCAATGTCGAGTGCGTAGCCAACAATGTGTTGACGAGGTTAGCTAGCTGGAGTAGCTGATGATGTGGTGGCATCTCAATTCCCAGATTGCAAATTGCTGCAATTCCAAATGCCCCTTCTTTGCAAAAAA] consensusID : consensus_6139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [ACTCCCCTCTTCTCCTCACCTCGCCTCGCCGCGCCGCGCCGCGCGCTTGAAGAGGAGGCATGAAGCGGACGAGAGCGCANAGCCGAAGCTCCAGGAGGGGCAGGACGGCGNCGNCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGNAGGGCGAAGATGCCGAGGCAGCCCAAGGCGGCGTCGNCGGCAGCAAAGAAGGCGGCGNCGNCGTCGTCGGCGCGCGAGACGTCGTCGTCGTCTGTGGGGGCGTGGGCGGCANTGACATCCNNGCGTTCTTCTCCTTGTTCTTCCGTAGGGTACAATTNCGGCCAACNNTGCCCAACGGTT] [+] EMBL OSC20842 [ACTCCCCTCTTCTCCTCACCTCGCCTCGCCGCGCCGCGCCGCGCGCTTGAAGAGGAGGCATGAAGCGGACGAGAGCGCANAGCCGAAGCTCCAGGAGGGGCAGGACGGCGNCGNCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGNAGGGCGAAGATGCCGAGGCAGCCCAAGGCGGCGTCGNCGGCAGCAAAGAAGGCGGCGNCGNCGTCGTCGGCGCGCGAGACGTCGTCGTCGTCTGTGGGGGCGTGGGCGGCANTGACATCCNNGCGTTCTTCTCCTTGTTCTTCCGTAGGGTACAATTNCGGCCAACNNTGCCCAACGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6139#0 CACTCCCACTCTCACTGACTCACACCCCGTCACTCCCCTCTTCTCCTCACCTCGCCTCGC 60 consensus_6139#1 -------------------------------ACTCCCCTCTTCTCCTCACCTCGCCTCGC 29 ***************************** consensus_6139#0 CGCGCCGCGCCGCGCGCT-GAAGAGGAGGCATGAAGCGGACGAGAGCGCAGCAGCCGAAG 119 consensus_6139#1 CGCGCCGCGCCGCGCGCTTGAAGAGGAGGCATGAAGCGGACGAGAGCGCAN-AGCCGAAG 88 ****************** ******************************* ******** consensus_6139#0 CTCCAGGAGGGGCAGGACGGCGGCGGCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGG 179 consensus_6139#1 CTCCAGGAGGGGCAGGACGGCGNCGNCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGN 148 ********************** ** ********************************* consensus_6139#0 AGGGCGAAGCAGCCGAGGCAGCCCAAGGCGGCGTCGGCGGCAGCCAAGAAGGCGGCGGCG 239 consensus_6139#1 AGGGCGAAGATGCCGAGGCAGCCCAAGGCGGCGTCGNCGGCAGCAAAGAAGGCGGCGNCG 208 ********* ************************* ******* ************ ** consensus_6139#0 GCGGCGGCGGCGCGCGAGTCGTCGTCGTCGTCTGTGGGGGCGGGGGCGGCAGTGACATCC 299 consensus_6139#1 NCGTCGTCGGCGCGCGAGACGTCGTCGTCGTCTGTGGGGGCGTGGGCGGCANTGACATCC 268 ** ** *********** *********************** ******** ******** consensus_6139#0 GCGGCGTCCTCCTCCTGCTCCTCCGGAGCGGACA--TGGCGCCCACCGTGCCCGACGTGT 357 consensus_6139#1 NNGCGTTCTTCTCCTTGTTCTTCCGTAGGGTACAATTNCGGCCAACNNTGCCCAACGGTT 328 * ** ** * ** ** **** ** * *** * *** ** ***** *** * consensus_6139#0 GTGGCGGCGGCGGCGGCGGCGCGGGATACGAGGCCGGGGCGGCGACCACCGTCGAGTGGG 417 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 ACCTCGACGGCGGGCTCAGCAACGGGTTGTCGTGGTGGACGTTCGGGGTGGAGGAGGAGA 477 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 AGCTGCTGGGGTGGTTCCCCTTCGTGGAGGAGGACTTCCGCTGCCTCGGCGCCCGCGGCG 537 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 ACGCCGAGATGGCCTTCGACGACGACATTTGGAGGATCCACCAAATCTACGAGATACCCA 597 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 ATTACGCCGCCAAGTGATCGATCGGATTCATCTTTGGTTTTTTCCCCTAGATTACTTGGT 657 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 AGTAATTGTTGCGTGGTACAGGAATCAATGTCGAGTGCGTAGCCAACAATGTGTTGACGA 717 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 GGTTAGCTAGCTGGAGTAGCTGATGATGTGGTGGCATCTCAATTCCCAGATTGCAAATTG 777 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 CTGCAATTCCAAATGCCCCTTCTTTGCAAAAAA 810 consensus_6139#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||