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Oryza sativa
cluster # 6139 cluster # 6139       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6139#0 length = 810 sequences # 3  
consensus_6139#1 length = 328 sequences # 1  

consensusID : consensus_6139#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 810
fasta sequence
                              [CACTCCCACTCTCACTGACTCACACCCCGTCACTCCCCTCTTCTCCTCACCTCGCCTCGCCGCGCCGCGCCGCGCGCTGAAGAGGAGGCATGAAGCGGACGAGAGCGCAGCAGCCGAAGCTCCAGGAGGGGCAGGACGGCGGCGGCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGGAGGGCGAAGCAGCCGAGGCAGCCCAAGGCGGCGTCGGCGGCAGCCAAGAAGGCGGCGGCGGCGGCGGCGGCGCGCGAGTCGTCGTCGTCGTCTGTGGGGGCGGGGGCGGCAGTGACATCCGCGGCGTCCTCCTCCTGCTCCTCCGGAGCGGACATGGCGCCCACCGTGCCCGACGTGTGTGGCGGCGGCGGCGGCGGCGCGGGATACGAGGCCGGGGCGGCGACCACCGTCGAGTGGGACCTCGACGGCGGGCTCAGCAACGGGTTGTCGTGGTGGACGTTCGGGGTGGAGGAGGAGAAGCTGCTGGGGTGGTTCCCCTTCGTGGAGGAGGACTTCCGCTGCCTCGGCGCCCGCGGCGACGCCGAGATGGCCTTCGACGACGACATTTGGAGGATCCACCAAATCTACGAGATACCCAATTACGCCGCCAAGTGATCGATCGGATTCATCTTTGGTTTTTTCCCCTAGATTACTTGGTAGTAATTGTTGCGTGGTACAGGAATCAATGTCGAGTGCGTAGCCAACAATGTGTTGACGAGGTTAGCTAGCTGGAGTAGCTGATGATGTGGTGGCATCTCAATTCCCAGATTGCAAATTGCTGCAATTCCAAATGCCCCTTCTTTGCAAAAAA]

[+] EMBL AK105373             [CACTCCCACTCTCACTGACTCACACCCCGTCACTCCCCTCTTCTCCTCACCTCGCCTCGCCGCGCCGCGCCGCGCGCTGAAGAGGAGGCATGAAGCGGACGAGAGCGCAGCAGCCGAAGCTCCAGGAGGGGCAGGACGGCGGCGGCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGGAGGGCGAAGCAGCCGAGGCAGCCCAAGGCGGCGTCGGCGGCAGCCAAGAAGGCGGCGGCGGCGGCGGCGGCGCGCGAGTCGTCGTCGTCGTCTGTGGGGGCGGGGGCGGCAGTGACATCCGCGGCGTCCTCCTCCTGCTCCTCCGGAGCGGACATGGCGCCCACCGTGCCCGACGTGTGTGGCGGCGGCGGCGGCGGCGCGGGATACGAGGCCGGGGCGGCGACCACCGTCGAGTGGGACCTCGACGGCGGGCTCAGCAACGGGTTGTCGTGGTGGACGTTCGGGGTGGAGGAGGAGAAGCTGCTGGGGTGGTTCCCCTTCGTGGAGGAGGACTTCCGCTGCCTCGGCGCCCGCGGCGACGCCGAGATGGCCTTCGACGACGACATTTGGAGGATCCACCAAATCTACGAGATACCCAATTACGCCGCCAAGTGATCGATCGGATTCATCTTTGGTTTTTTCCCCTAGATTACTTGGTAGTAATTGTTGCGTGGTACAGGAATCAATGTCGAGTGCGTAGCCAACAATGTGTTGACGAGGTTAGCTAGCTGGAGTAGCTGATGATGTGGTGGCATCTCAATTCCCAGATTGCAAATTGCTGCAATTCCAAATGCC                ]
[+] EMBL AU076136             [                                                      CCTCGCCGCGCCGCGCCGCGCGCTGAAGAGGAGGCATGAAGCGGACGAGAGCGCAGCAGCCGAAGCTCCAGGAGGGGCAGGACGGCGGCGGCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGGAGGGCGAAGCAGCCGAGGCAGCCCAAGGCGGCGTCGGCGGCAGCCAAGAAGGCGGCGGCGGCGGCGGCGGCGCGCGAGTCGTCGTCGTCGTCTGTGGGGGCGGNGGCGGCAGTGACATCCGCGGCGTCCTCCTCCTGCTCCTCCGGAGCGGACATGGCGCCCACCGTGCCCGACGTGTGTGGCGGCGGCGGCGGCGGCGCGGGATACGAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU076137             [                                                                                                                                                                                                                                                                                                                                                                                              ATACGAGGCCGGGGCGGCGACCACCGTCGAGTGGGACCTCGACGGCGGGCTCAGCAACGGGTTGTCGTGGTGGACGTTCGGGGTGGAGGAGGAGAAGCTGCTGGGGTGGTTCCCCTTCGTGGAGGAGGACTTCCGCTGCCTCGGCGCCCGCGGCGACGCCGAGATGGCCTTCGACGACGACATTTGGAGGATCCACCAAATCTACGAGATACCCAATTACGCCGCCAAGTGATCGATCGGATTCATCTTTGGTTTTTTCCCCTAGATTACTTGGTAGTAATTGTTGCGTGGTACAGGAATCAATGTCGAGTGCGTAGCCAACAATGTGTTGACGAGGTTAGCTAGCTGGAGTAGCTGATGATGTGGTGGCATCTCAATTCCCAGATTGCAAATTGCTGCAATTCCAAATGCCCCTTCTTTGCAAAAAA]


>consensus_6139#0 CACTCCCACTCTCACTGACTCACACCCCGTCACTCCCCTCTTCTCCTCACCTCGCCTCGC CGCGCCGCGCCGCGCGCTGAAGAGGAGGCATGAAGCGGACGAGAGCGCAGCAGCCGAAGC TCCAGGAGGGGCAGGACGGCGGCGGCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGGA GGGCGAAGCAGCCGAGGCAGCCCAAGGCGGCGTCGGCGGCAGCCAAGAAGGCGGCGGCGG CGGCGGCGGCGCGCGAGTCGTCGTCGTCGTCTGTGGGGGCGGGGGCGGCAGTGACATCCG CGGCGTCCTCCTCCTGCTCCTCCGGAGCGGACATGGCGCCCACCGTGCCCGACGTGTGTG GCGGCGGCGGCGGCGGCGCGGGATACGAGGCCGGGGCGGCGACCACCGTCGAGTGGGACC TCGACGGCGGGCTCAGCAACGGGTTGTCGTGGTGGACGTTCGGGGTGGAGGAGGAGAAGC TGCTGGGGTGGTTCCCCTTCGTGGAGGAGGACTTCCGCTGCCTCGGCGCCCGCGGCGACG CCGAGATGGCCTTCGACGACGACATTTGGAGGATCCACCAAATCTACGAGATACCCAATT ACGCCGCCAAGTGATCGATCGGATTCATCTTTGGTTTTTTCCCCTAGATTACTTGGTAGT AATTGTTGCGTGGTACAGGAATCAATGTCGAGTGCGTAGCCAACAATGTGTTGACGAGGT TAGCTAGCTGGAGTAGCTGATGATGTGGTGGCATCTCAATTCCCAGATTGCAAATTGCTG CAATTCCAAATGCCCCTTCTTTGCAAAAAA



consensusID : consensus_6139#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence
                              [ACTCCCCTCTTCTCCTCACCTCGCCTCGCCGCGCCGCGCCGCGCGCTTGAAGAGGAGGCATGAAGCGGACGAGAGCGCANAGCCGAAGCTCCAGGAGGGGCAGGACGGCGNCGNCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGNAGGGCGAAGATGCCGAGGCAGCCCAAGGCGGCGTCGNCGGCAGCAAAGAAGGCGGCGNCGNCGTCGTCGGCGCGCGAGACGTCGTCGTCGTCTGTGGGGGCGTGGGCGGCANTGACATCCNNGCGTTCTTCTCCTTGTTCTTCCGTAGGGTACAATTNCGGCCAACNNTGCCCAACGGTT]

[+] EMBL OSC20842             [ACTCCCCTCTTCTCCTCACCTCGCCTCGCCGCGCCGCGCCGCGCGCTTGAAGAGGAGGCATGAAGCGGACGAGAGCGCANAGCCGAAGCTCCAGGAGGGGCAGGACGGCGNCGNCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGNAGGGCGAAGATGCCGAGGCAGCCCAAGGCGGCGTCGNCGGCAGCAAAGAAGGCGGCGNCGNCGTCGTCGGCGCGCGAGACGTCGTCGTCGTCTGTGGGGGCGTGGGCGGCANTGACATCCNNGCGTTCTTCTCCTTGTTCTTCCGTAGGGTACAATTNCGGCCAACNNTGCCCAACGGTT]


>consensus_6139#1 ACTCCCCTCTTCTCCTCACCTCGCCTCGCCGCGCCGCGCCGCGCGCTTGAAGAGGAGGCA TGAAGCGGACGAGAGCGCANAGCCGAAGCTCCAGGAGGGGCAGGACGGCGNCGNCGCGGC CGGGAACGCCAACCCGAAGCCGCAGCGNAGGGCGAAGATGCCGAGGCAGCCCAAGGCGGC GTCGNCGGCAGCAAAGAAGGCGGCGNCGNCGTCGTCGGCGCGCGAGACGTCGTCGTCGTC TGTGGGGGCGTGGGCGGCANTGACATCCNNGCGTTCTTCTCCTTGTTCTTCCGTAGGGTA CAATTNCGGCCAACNNTGCCCAACGGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6139#0      CACTCCCACTCTCACTGACTCACACCCCGTCACTCCCCTCTTCTCCTCACCTCGCCTCGC 60
consensus_6139#1      -------------------------------ACTCCCCTCTTCTCCTCACCTCGCCTCGC 29
                                                     *****************************

consensus_6139#0      CGCGCCGCGCCGCGCGCT-GAAGAGGAGGCATGAAGCGGACGAGAGCGCAGCAGCCGAAG 119
consensus_6139#1      CGCGCCGCGCCGCGCGCTTGAAGAGGAGGCATGAAGCGGACGAGAGCGCAN-AGCCGAAG 88
                      ****************** *******************************  ********

consensus_6139#0      CTCCAGGAGGGGCAGGACGGCGGCGGCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGG 179
consensus_6139#1      CTCCAGGAGGGGCAGGACGGCGNCGNCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGN 148
                      ********************** ** ********************************* 

consensus_6139#0      AGGGCGAAGCAGCCGAGGCAGCCCAAGGCGGCGTCGGCGGCAGCCAAGAAGGCGGCGGCG 239
consensus_6139#1      AGGGCGAAGATGCCGAGGCAGCCCAAGGCGGCGTCGNCGGCAGCAAAGAAGGCGGCGNCG 208
                      *********  ************************* ******* ************ **

consensus_6139#0      GCGGCGGCGGCGCGCGAGTCGTCGTCGTCGTCTGTGGGGGCGGGGGCGGCAGTGACATCC 299
consensus_6139#1      NCGTCGTCGGCGCGCGAGACGTCGTCGTCGTCTGTGGGGGCGTGGGCGGCANTGACATCC 268
                       ** ** *********** *********************** ******** ********

consensus_6139#0      GCGGCGTCCTCCTCCTGCTCCTCCGGAGCGGACA--TGGCGCCCACCGTGCCCGACGTGT 357
consensus_6139#1      NNGCGTTCTTCTCCTTGTTCTTCCGTAGGGTACAATTNCGGCCAACNNTGCCCAACGGTT 328
                        *   ** **  * ** ** **** ** * ***  *   *** **  ***** ***  *

consensus_6139#0      GTGGCGGCGGCGGCGGCGGCGCGGGATACGAGGCCGGGGCGGCGACCACCGTCGAGTGGG 417
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      ACCTCGACGGCGGGCTCAGCAACGGGTTGTCGTGGTGGACGTTCGGGGTGGAGGAGGAGA 477
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      AGCTGCTGGGGTGGTTCCCCTTCGTGGAGGAGGACTTCCGCTGCCTCGGCGCCCGCGGCG 537
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      ACGCCGAGATGGCCTTCGACGACGACATTTGGAGGATCCACCAAATCTACGAGATACCCA 597
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      ATTACGCCGCCAAGTGATCGATCGGATTCATCTTTGGTTTTTTCCCCTAGATTACTTGGT 657
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      AGTAATTGTTGCGTGGTACAGGAATCAATGTCGAGTGCGTAGCCAACAATGTGTTGACGA 717
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      GGTTAGCTAGCTGGAGTAGCTGATGATGTGGTGGCATCTCAATTCCCAGATTGCAAATTG 777
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      CTGCAATTCCAAATGCCCCTTCTTTGCAAAAAA 810
consensus_6139#1      ---------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)