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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6141#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2068 fasta sequence
[CATGAGTCCGTCTAGTGTAGCGCGGCGTCGGTTGTGCGTCCCCCGATTTATAATGGATCGCATCGGCGCATTCGCTATAGTGGTTGCTGCTGCCGGTGCGTCCACCGTCGTTAATGCCGGCGCGCGAGAGATACATGTACGCGACTAGTAGATTCTCTACGCCAACTCGATCGATCGCTCTCTGCGTCCACCACCGAAACTATTTCTGCATGTTCATCAGCTGCTAGCTGTTCTTGCACATAGTGGTGGTGGTGTAGTGGTGTGTGAGACTGTGAGTGATTGTGCGCTCGTGAGCGAGCTCAGCTGGGCTGGCTAGCTCATGAGCATCCCG-TTCTCCTCGGCTGCAAGATGGATCAGATGAGGCGGCAGCGGCGGCGGGAGTGCATTGGTGTTCTTTGCTCGGCGCTGTTTTTCTCTGTCCTGGCAGTGGCCGTCGCCGCAGGCTCCGGCTCGTCGTCGCAGCCGCCGTCTTCGTCTCCGGCGCCAGCTGCTAGCTCAGCAACGCCGGCTGCGAGGGCGCCTTCTCAACGGACGCCGCCGACGCCAGCAACGCCGGCAAAGGCGGCATCCCCACCGGCGACGAACTCGTCGTCCTCTCCACGGACACCCGCGGCGCCAGCCCCGAGGCCTCCACAGCCGCCACCGGCGACGTCGCCGGCGCCAACAAAGCCGTCGTCTCCACCCGCGCCGAAGCCACCTTCCCCTCCTGCGCCGTCGCCGTCCACAACGCCGTCGTCTCCACCCGCGCCGAAGCCATCTTCTCCTCCTCCTGCGGCGACGCCGACCACAAAGCCGTCTCCTCCACCGTCCTCGCCACCGGCTCCGAGGCCGTCTCCTCCTCTTCCTCCTCGGACGCCACCGCCACCGCCGCCGGCAGCGGCACCGAAACCATCTCCTTCTCCTCCTCCGGCTCCAACGAATTCCACGACGAACTCCTCCTCGCCGTCGACGTCCACGCCGGTCCAGCTCTCGCCAAATTTCTACGCGCAGTCCTGCCCGAGCGTGGAGCTGGCGGTGAGGGATGTCGTCAGGTCGGCCTCCACATTGGATTCCACCATCCCCGGCAAGCTTCTCAGGATGCTCTTCCATGACTGCTTTGTTGAGGGATGTGATGCATCAGTGATGATTGAAGGTAGCGGCACGGAGAGGACCGATCCTGCAAACCTCTCACTTGGTGGGTTCAATGTCATAGATGCTGCCAAGAGGCTGCTTGAAGCCGTGTGCCCTGTAACTGTTTCCTGCAGCGACATTTTAGTCCTTGCCGCAAGAGATGCTGTTACATTTACCGGAGGACCGTTGGTGCCAGTCTCTCTCGGGAGGCTCGACGGCCTGGTCTCGCTGGCCTCCAACGTCAGGGCGAACATCATCGACACCGGCTTCTCCGTCGACGCCATGGCGAGGAGCTTCTCCGCCAAAGGGCTCACCCTGGACGACCTCGTCACCCTCTCAGGGGGGCACACCATCGGGTCGGCGCACTGCACGACGTTCGGGGAGCGGTTCCGGGTGGACGCGAACGGGAGCACGGTGCCCGCGGACGCGGCGATGAACGCGGACTACGCCGGGGGGCTGATCAGGGCGTGCTCGGCGGTGAACAACACGGTGTCGTCGACGGCGGCGGTGGACTGCGACGAGGGGTCGGCGTCGCGGTTCGACAACGCCTACTTCGCCAACCTGCTCGCCGGGCGCGGGCTGCTGCGCACGGACGCCGTGCTGGTGCAGAACGCCACGACGCGGGCCACGGTGGAGGCGTTCGCGCGGAGCGAGGGGAGCTTCTTCGCCAGCTGGGCGGCCTCGTTCGCCAGGCTCACCAGCCTCGGCGTCAGGACCGGCGCCGACGGCGAGGTCCGCCGGACGTGCTCCCGCGTCAACGGCTGATGATGCGTGCACGCACGATCGATACATACATGCATAGAAGGGATCGACACAATGTATGTTGAGAATGATCGATATTCGATTTGTTCGTTGTTGTTGATGATGATCTGTTTGTAGTAGCAGCTTGGTTTTTTTTTTCTCCATGCTCTGGTCTGGATGGTCATGATTTAGCGAAAGGAGAGTGAAAATTAAGTGA]
[+] EMBL AK059661 [CATGAGTCCGTCTAGTGTAGCGCGGCGTCGGTTGTGCGTCCCCCGATTTATAATGGATCGCATCGGCGCATTCGCTATAGTGGTTGCTGCTGCCGGTGCGTCCACCGTCGTTAATGCCGGCGCGCGAGAGATACATGTACGCGACTAGTAGATTCTCTACGCCAACTCGATCGATCGCTCTCTGCGTCCACCACCGAAACTATTTCTGCATGTTCATCAGCTGCTAGCTGTTCTTGCACATAGTGGTGGTGGTGTAGTGGTGTGTGAGACTGTGAGTGATTGTGCGCTCGTGAGCGAGCTCAGCTGGGCTGGCTAGCTCATGAGCATCCCG TTCTCCTCGGCTGCAAGATGGATCAGATGAGGCGGCAGCGGCGGCGGGAGTGCATTGGTGTTCTTTGCTCGGCGCTGTTTTTCTCTGTCCTGGCAGTGGCCGTCGCCGCAGGCTCCGGCTCGTCGTCGCAGCCGCCGTCTTCGTCTCCGGCGCCAGCTGCTAGCTCAGCAACGCCGGCTGCGAGGGCGCCTTCTCAACGGACGCCGCCGACGCCAGCAACGCCGGCAAAGGCGGCATCCCCACCGGCGACGAACTCGTCGTCCTCTCCACGGACACCCGCGGCGCCAGCCCCGAGGCCTCCACAGCCGCCACCGGCGACGTCGCCGGCGCCAACAAAGCCGTCGTCTCCACCCGCGCCGAAGCCACCTTCCCCTCCTGCGCCGTCGCCGTCCACAACGCCGTCGTCTCCACCCGCGCCGAAGCCATCTTCTCCTCCTCCTGCGGCGACGCCGACCACAAAGCCGTCTCCTCCACCGTCCTCGCCACCGGCTCCGAGGCCGTCTCCTCCTCTTCCTCCTCGGACGCCACCGCCACCGCCGCCGGCAGCGGCACCGAAACCATCTCCTTCTCCTCCTCCGGCTCCAACGAATTCCACGACGAACTCCTCCTCGCCGTCGACGTCCACGCCGGTCCAGCTCTCGCCAAATTTCTACGCGCAGTCCTGCCCGAGCGTGGAGCTGGCGGTGAGGGATGTCGTCAGGTCGGCCTCCACATTGGATTCCACCATCCCCGGCAAGCTTCTCAGGATGCTCTTCCATGACTGCTTTGTTGAGGGATGTGATGCATCAGTGATGATTGAAGGTAGCGGCACGGAGAGGACCGATCCTGCAAACCTCTCACTTGGTGGGTTCAATGTCATAGATGCTGCCAAGAGGCTGCTTGAAGCCGTGTGCCCTGTAACTGTTTCCTGCAGCGACATTTTAGTCCTTGCCGCAAGAGATGCTGTTACATTTACCGGAGGACCGTTGGTGCCAGTCTCTCTCGGGAGGCTCGACGGCCTGGTCTCGCTGGCCTCCAACGTCAGGGCGAACATCATCGACACCGGCTTCTCCGTCGACGCCATGGCGAGGAGCTTCTCCGCCAAAGGGCTCACCCTGGACGACCTCGTCACCCTCTCAGGGGGGCACACCATCGGGTCGGCGCACTGCACGACGTTCGGGGAGCGGTTCCGGGTGGACGCGAACGGGAGCACGGTGCCCGCGGACGCGGCGATGAACGCGGACTACGCCGGGGGGCTGATCAGGGCGTGCTCGGCGGTGAACAACACGGTGTCGTCGACGGCGGCGGTGGACTGCGACGAGGGGTCGGCGTCGCGGTTCGACAACGCCTACTTCGCCAACCTGCTCGCCGGGCGCGGGCTGCTGCGCACGGACGCCGTGCTGGTGCAGAACGCCACGACGCGGGCCACGGTGGAGGCGTTCGCGCGGAGCGAGGGGAGCTTCTTCGCCAGCTGGGCGGCCTCGTTCGCCAGGCTCACCAGCCTCGGCGTCAGGACCGGCGCCGACGGCGAGGTCCGCCGGACGTGCTCCCGCGTCAACGGCTGATGATGCGTGCACGCACGATCGATACATACATGCATAGAAGGGATCGACACAATGTATGTTGAGAATGATCGATATTCGATTTGTTCGTTGTTGTTGATGATGATCTGTTTGTAGTAGCAGCTTGGT ]
[+] EMBL AK121011 [ TGCTGCTGCCGGTGCGTCCACCGTCGTTAATGCCGGCGCGCGAGAGATACATGTACGCGACTAGTAGATTCTCTACGCCAACTCGATCGATCGCTCTCTGCGTCCACCACCGAAACTATTTCTGCATGTTCATCAGCTGCTAGCTGTTCTTGCACATAGTGGTGGTGGTGTAGTGGTGTGTGAGACTGTGAGTGATTGTGCGCTCGTGAGCGAGCTCAGCTGGGCTGGCTAGCTCATGAGCATCCCGTTTCTCCTCGGCTGCAAGATGGATCAGATGAGGCGGCAGCGGCGGCGGGAGTGCATTGGTGTTCTTTGCTCGGCGCTGTTTTTCTCTGTCCTGGCAGTGGCCGTCGCCGCAGGCTCCGGCTCGTCGTCGCAGCCGCCGTCTTCGTCTCCGGCGCCAGCTGCTAGCTCAGCAACGCCGGCTGCGAGGGCGCCTTCTCAACGGACGCCGCCGACGCCAGCAACGCCGGCAAAGGCGGCATCCCCACCGGCGACGAACTCGTCGTCCTCTCCACGGACACCCGCGGCGCCAGCCCCGAGGCCTCCACAGCCGCCACCGGCGACGTCGCCGGCGCCAACAAAGCCGTCGTCTCCACCCGCGCCGAAGCCACCTTCCCCTCCTGCGCCGTCGCCGTCCACAACGCCGTCGTCTCCACCCGCGCCGAAGCCATCTTCTCCTCCTCCTGCGGCGACGCCGACCACAAAGCCGTCTCCTCCACCGTCCTCGCCACCGGCTCCGAGACCGTCTCCTCCTCTTCCTCCTCGGACGCCACCGCCACCGCCGCCGGCAGCGGCACCGAAACCATCTCCTTCTCCTCCTCCGGCTCCAACGAATTCCACGACGAACTCCTCCTCGCCGTCGACGTCCACGCCGGTCCAGCTCTCGCCAAATTTCTACGCGCAGTCCTGCCCGAGCGTGGAGCTGGCGGTGAGGGATGTCGTCAGGTCGGCCTCCACATTGGATTCCACCATCCCCGGCAAGCTTCTCAGGATGCTCTTCCATGACTGCTTTGTTGAGGGATGTGATGCATCAGTGATGATTGAAGGTAGCGGCACGGAGAGGACCGATCCTGCAAACCTCTCACTTGGTGGGTTCAATGTCATAGATGCTGCCAAGAGGCTGCTTGAAGCCGTGTGCCCTGTAACTGTTTCCTGCAGCGACA TTTAGTCCTTGCCGCAAGAGATGCTGTTACATTTACCGGAGGACCGTTGGTGCCAGTCTCTCTCGGGAGGCTCGACGGCCTGGTCTCGCTGGCCTCCAACGTCAGGGCGAACATCATCGACACCGGCTTCTCCGTCGACGCCATGGCGAGGAGCTTCTCCGCCAAAGGGCTCACCCTGGACGACCTCGTCACCCTCTCAGGGGGGCACACCATCGGGTCGGCGCACTGCACGACGTTCGGGGAGCGGTTCCGGGTGGACGCGAACGGGAGCACGGTGCCCGCGGACGCGGCGATGAACGCGGACTACGCCGGGGGGCTGATCAGGGCGTGCTCGGCGGTGAACAACACGGTGTCGTCGACGGCGGCGGTGGACTGCGACGAGGGGTCGGCGTCGCGGTTCGACAACGCCTACTTCGCCAACCTGCTCGCCGGGCGCGGGCTGCTGCGCACGGACGCCGTGCTGGTGCAGAACGCCACGACGCGGGCCACGGTGGAGGCGTTCGCGCGGAGCGAGGGGAGCTTCTTCGCCAGCTGGGCGGCCTCGTTCGCCAGGCTCACCAGCCTCGGCGTCAGGACCGGCGCCGACGGCGAGGTCCGCCGGACGTGCTCCCGCGTCAACGGCTGATGATGCGTGCACGCACGATCGATACATACATGCATAGAAGGGATCGACACAATGTATGTTGAGAATGATCGATATTCGATTTGTTCGTTGTTGTTGATGATGATCTGTTTGTAGTAGCAGCTTGGTTTTTTTTTTCTCCATGCTCTGGTCTGGATGGTCATGATTTAGCGAAAGGAGAGTGAAAATTAAGTGA]
[+] EMBL C91728 [ GGTGTGTGAGACTGTGAGTGATTGTGCGCTCGTGAGCGAGCTCAGCTGGGCTGGCTAGCTCATGAGCATCCCG GTCTCCTCGGCTGCAAGATGGATCAGATGAGGCGGCAGGGGCGGCGGGAGTGCATTGGTGTTCTTTGCTCGGCGCTGTTTTTCTCTGTCCTGGCAGTGGCCGTCGCAATATTGGCCGGCTCGTCGTCGCAGCCGCCGTCTTCGTCTCCGGCGCCA CTGCTAGCTCAGCAACGCCGGCTGCGAGGGCGCCTTCTCAACGGACGCCGCCGACGCCAGCAACGCCGGCAAAGGCGGCATCCCCACCGGCGACGAACTCGTCGTCCTCTCCACGGACA CCGCGGCGCAACCCCCGAGGCCTCCACAGCCG CAACGGGAACGTCGCCGNCGCAAACAAA CCGTCGT TTCAACCGNG CGAAG CAACTTTCCCT CTGCG ]
consensusID : consensus_6141#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence
[TTCGCCAGCTGGGCGGCCTCGTTNGCCAGGCTCACCAGCCTCGGCGTCAGGACCGGCGCCGACGGCGAGGTCCGCCGGACGTGCTCCCGCGTCAACGGCTGATGATGCGTGCACGCACGATCGATACATACATGCATAGAAGGGATCGACACAATGTATGTTGAGAATGATCGATATTCGATTTGTTCGTTGTTGTTGATGAAAAAAAAAAA]
[+] EMBL AU172837 [TTCGCCAGCTGGGCGGCCTCGTTNGCCAGGCTCACCAGCCTCGGCGTCAGGACCGGCGCCGACGGCGAGGTCCGCCGGACGTGCTCCCGCGTCAACGGCTGATGATGCGTGCACGCACGATCGATACATACATGCATAGAAGGGATCGACACAATGTATGTTGAGAATGATCGATATTCGATTTGTTCGTTGTTGTTGATGAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6141#0 CATGAGTCCGTCTAGTGTAGCGCGGCGTCGGTTGTGCGTCCCCCGATTTATAATGGATCG 60
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 CATCGGCGCATTCGCTATAGTGGTTGCTGCTGCCGGTGCGTCCACCGTCGTTAATGCCGG 120
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 CGCGCGAGAGATACATGTACGCGACTAGTAGATTCTCTACGCCAACTCGATCGATCGCTC 180
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 TCTGCGTCCACCACCGAAACTATTTCTGCATGTTCATCAGCTGCTAGCTGTTCTTGCACA 240
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 TAGTGGTGGTGGTGTAGTGGTGTGTGAGACTGTGAGTGATTGTGCGCTCGTGAGCGAGCT 300
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 CAGCTGGGCTGGCTAGCTCATGAGCATCCCGTTCTCCTCGGCTGCAAGATGGATCAGATG 360
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 AGGCGGCAGCGGCGGCGGGAGTGCATTGGTGTTCTTTGCTCGGCGCTGTTTTTCTCTGTC 420
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 CTGGCAGTGGCCGTCGCCGCAGGCTCCGGCTCGTCGTCGCAGCCGCCGTCTTCGTCTCCG 480
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 GCGCCAGCTGCTAGCTCAGCAACGCCGGCTGCGAGGGCGCCTTCTCAACGGACGCCGCCG 540
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 ACGCCAGCAACGCCGGCAAAGGCGGCATCCCCACCGGCGACGAACTCGTCGTCCTCTCCA 600
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 CGGACACCCGCGGCGCCAGCCCCGAGGCCTCCACAGCCGCCACCGGCGACGTCGCCGGCG 660
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 CCAACAAAGCCGTCGTCTCCACCCGCGCCGAAGCCACCTTCCCCTCCTGCGCCGTCGCCG 720
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 TCCACAACGCCGTCGTCTCCACCCGCGCCGAAGCCATCTTCTCCTCCTCCTGCGGCGACG 780
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 CCGACCACAAAGCCGTCTCCTCCACCGTCCTCGCCACCGGCTCCGAGGCCGTCTCCTCCT 840
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 CTTCCTCCTCGGACGCCACCGCCACCGCCGCCGGCAGCGGCACCGAAACCATCTCCTTCT 900
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 CCTCCTCCGGCTCCAACGAATTCCACGACGAACTCCTCCTCGCCGTCGACGTCCACGCCG 960
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 GTCCAGCTCTCGCCAAATTTCTACGCGCAGTCCTGCCCGAGCGTGGAGCTGGCGGTGAGG 1020
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 GATGTCGTCAGGTCGGCCTCCACATTGGATTCCACCATCCCCGGCAAGCTTCTCAGGATG 1080
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 CTCTTCCATGACTGCTTTGTTGAGGGATGTGATGCATCAGTGATGATTGAAGGTAGCGGC 1140
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 ACGGAGAGGACCGATCCTGCAAACCTCTCACTTGGTGGGTTCAATGTCATAGATGCTGCC 1200
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 AAGAGGCTGCTTGAAGCCGTGTGCCCTGTAACTGTTTCCTGCAGCGACATTTTAGTCCTT 1260
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 GCCGCAAGAGATGCTGTTACATTTACCGGAGGACCGTTGGTGCCAGTCTCTCTCGGGAGG 1320
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 CTCGACGGCCTGGTCTCGCTGGCCTCCAACGTCAGGGCGAACATCATCGACACCGGCTTC 1380
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 TCCGTCGACGCCATGGCGAGGAGCTTCTCCGCCAAAGGGCTCACCCTGGACGACCTCGTC 1440
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 ACCCTCTCAGGGGGGCACACCATCGGGTCGGCGCACTGCACGACGTTCGGGGAGCGGTTC 1500
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 CGGGTGGACGCGAACGGGAGCACGGTGCCCGCGGACGCGGCGATGAACGCGGACTACGCC 1560
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 GGGGGGCTGATCAGGGCGTGCTCGGCGGTGAACAACACGGTGTCGTCGACGGCGGCGGTG 1620
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 GACTGCGACGAGGGGTCGGCGTCGCGGTTCGACAACGCCTACTTCGCCAACCTGCTCGCC 1680
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 GGGCGCGGGCTGCTGCGCACGGACGCCGTGCTGGTGCAGAACGCCACGACGCGGGCCACG 1740
consensus_6141#1 ------------------------------------------------------------
consensus_6141#0 GTGGAGGCGTTCGCGCGGAGCGAGGGGAGCTTCTTCGCCAGCTGGGCGGCCTCGTTCGCC 1800
consensus_6141#1 ---------------------------------TTCGCCAGCTGGGCGGCCTCGTTNGCC 27
*********************** ***
consensus_6141#0 AGGCTCACCAGCCTCGGCGTCAGGACCGGCGCCGACGGCGAGGTCCGCCGGACGTGCTCC 1860
consensus_6141#1 AGGCTCACCAGCCTCGGCGTCAGGACCGGCGCCGACGGCGAGGTCCGCCGGACGTGCTCC 87
************************************************************
consensus_6141#0 CGCGTCAACGGCTGATGATGCGTGCACGCACGATCGATACATACATGCATAGAAGGGATC 1920
consensus_6141#1 CGCGTCAACGGCTGATGATGCGTGCACGCACGATCGATACATACATGCATAGAAGGGATC 147
************************************************************
consensus_6141#0 GACACAATGTATGTTGAGAATGATCGATATTCGATTTGTTCGTTGTTGTTGATGATGATC 1980
consensus_6141#1 GACACAATGTATGTTGAGAATGATCGATATTCGATTTGTTCGTTGTTGTTGATGAAAAAA 207
******************************************************* *
consensus_6141#0 TGTTTGTAGTAGCAGCTTGGTTTTTTTTTTCTCCATGCTCTGGTCTGGATGGTCATGATT 2040
consensus_6141#1 AAAAA------------------------------------------------------- 212
consensus_6141#0 TAGCGAAAGGAGAGTGAAAATTAAGTGA 2068
consensus_6141#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||