These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6145#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 930 fasta sequence [GTCTCCGCCTCCACCCTCACCGGCGCCACGCCGACGCCTCCGCCCTCCTCGACCACCCCCGCCCCCGACCGCGCGAGCTCCGGAGCAGTTGGCGTCGACAAGGAAGGGAGGTGAGGCGGCGGAGATGTTCTCCGGCGAGTGGACGCCGCCGTGCGGCAGCTGCTGCACCAAGAAGTACGCCAGCCTCGTCCAAATCCCATGGAGGGTCTTCTGCAAGAAGGGGTGCGACGCGGACGGCGACACCTGGGACGAGTGCATAAGTAAATGTACGGAAATATGCTACAAAGATCCTGTTTTGGAAGATCACCAGTGGAGTGCATATATCGATCGGTCTCCAGGACAGGATAGCTACTCCTTGGAGTGCTTCAATGCTTGTGTTTCTGGATGTGGATATAGGTTTGACATACCAGCGGAGAAAGTGGAGCAAATCAAACCAAACAGGCCATCCAAGCCACCACCACCACCACCTCCTGCAGTAGAGCGGGCCACGAATTCAGAACCTGCTGTGAAGGGTGAAGACGTGCCTTGCACATCAGCATAATAGTAATCTATGCAGCCCCAAATTTTGTGTAACTTTTGGTGCTTCTTTCCCTCATACTGCCTCCTTTTTTTTCTCTTTTCTGGGCTGTTTCTTTGCACCATGTGCTTGAAATTCGCAGTCCACCTTAGGCTGGGCTAGATGCTAACAAGATCTTAACGATAAATCCCAAAATCTTATTTATATTTTCATATGCTTGTTCATCCACATTGTATGTTAGTATGCTCCCTCCGTTCCTTTGTGGATGGCGCCGTTGTTAATAATACTTATAGATGGTTTATCATATCATAAACGAAAGCTTTGTGATTATATTTAGGATGCAACACACTTGGATAATATAGAATCATTTGAAGTGTAAATGTTTTTTTATTAAAAAAAAGACAAGCTCTAAA] [+] EMBL AK121081 [GTCTCCGCCTCCACCCTCACCGGCGCCACGCCGACGCCTCCGCCCTCCTCGACCACCCCCGCCCCCGACCGCGCGAGCTCCGGAGCAGTTGGCGTCGACAAGGAAGGGAGGTGAGGCGGCGGAGATGTTCTCCGGCGAGTGGACGCCGCCGTGCGGCAGCTGCTGCACCAAGAAGTACGCCAGCCTCGTCCAAATCCCATGGAGGGTCTTCTGCAAGAAGGGGTGCGACGCGGACGGCGACACCTGGGACGAGTGCATAAGTAAATGTACGGAAATATGCTACAAAGATCCTGTTTTGGAAGATCACCAGTGGAGTGCATATATCGATCGGTCTCCAGGACAGGATAGCTACTCCTTGGAGTGCTTCAATGCTTGTGTTTCTGGATGTGGATATAGGTTTGACATACCAGCGGAGAAAGTGGAGCAAATCAAACCAAACAGGCCATCCAAGCCACCACCACCACCACCTCCTGCAGTAGAGCGGGCCACGAATTCAGAACCTGCTGTGAAGGGTGAAGACGTGCCTTGCACATCAGCATAATAGTAATCTATGCAGCCCCAAATTTTGTGTAACTTTTGGTGCTTCTTTCCCTCATACTGCCTCCTTTTTTTTCTCTTTTCTGGGCTGTTTCTTTGCACCATGTGCTTGAAATTCGCAGTCCACCTTAGGCTGGGCTAGATGCTAACAAGATCTTAACGATAAATCCCAAAATCTTAT ] [-] EMBL CB637124 [ GGGCCACGAATTCAGAACCTGCTGTGAAGGGTGAAGACGTGCCTTGCACATCAGCATAATAGTAATCTATGCAGCCCCAAATTTTGTGTAACTTTTGGTGCTTCTTTCCCTCATACTGCCTCCTTTTTTTTCTCTTTTCTGGGCTGTTTCTTTGCACCATGTGCTTGAAATTCGCAGTCCACCTTAGGCTGGGCTAGATGCTAACAAGATCTTAACGATAAATCCCAAAATCTTATTTATATTTTCATATGCTTGTTCATCCACATTGTATGTTAGTATGCTCCCTCCGTTCCTTTGTGGATGGCGCCGTTGTTAATAATACTTATAGATGGTTTATCATATCATAAACGAAAGCTTTGTGATTATATTTAGGATGCAACACACTTGGATAATATAGAATCATTTGAAGTGTAAATGTTTTTTTATTAAAAAAAAGACAAGCTCTAAA] consensusID : consensus_6145#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 547 fasta sequence [GCAGGGAGGGTCTTCTGCAAGAAGGGGTGCGACGCGGACGGCGACACCTGGGACGAGTGTGAGTATTATCATCTGCCAAATGTCGCTGTGAATTGATTCATCCGCTCATTACCCGATTTTGGTTTTGCTGATGGTTTAGTTCATCGCCGATTCAAATATTTTCCATAGGATGAGATATTTATGTTATGTTATTCGTGGCTGTCCTTGTGAATGGATGGAAAATTAATATTAGGCGTATATGCTTTACACCGTTGATGGAAATCATGTTTTGGAGTTCAATAGTACTAGTATGTGGCTAGTTATCTGACAAAATAGGCATGGTTAACATAATGACCCCCTTCATTCAGTGGAATATAGTTAAAATTTTTAATTGGTAACTTGCAGTGCTGTTTGTGTCAATGCTAGCTGCAATGAGTCATGTACTCGTGTTTACAGTGGATCGTTGGTGCATTCCTTGCTCAGAAGTTTGTGTTGTTTCTGTTGGTGCCCTAGGAGCATTTTATTCTTCTGTTGATACCAATCTGTGTGATTTACGGCTAAGATTCAT] [+] EMBL CB640437 [GCAGGGAGGGTCTTCTGCAAGAAGGGGTGCGACGCGGACGGCGACACCTGGGACGAGTGTGAGTATTATCATCTGCCAAATGTCGCTGTGAATTGATTCATCCGCTCATTACCCGATTTTGGTTTTGCTGATGGTTTAGTTCATCGCCGATTCAAATATTTTCCATAGGATGAGATATTTATGTTATGTTATTCGTGGCTGTCCTTGTGAATGGATGGAAAATTAATATTAGGCGTATATGCTTTACACCGTTGATGGAAATCATGTTTTGGAGTTCAATAGTACTAGTATGTGGCTAGTTATCTGACAAAATAGGCATGGTTAACATAATGACCCCCTTCATTCAGTGGAATATAGTTAAAATTTTTAATTGGTAACTTGCAGTGCTGTTTGTGTCAATGCTAGCTGCAATGAGTCATGTACTCGTGTTTACAGTGGATCGTTGGTGCATTCCTTGCTCAGAAGTTTGTGTTGTTTCTGTTGGTGCCCTAGGAGCATTTTATTCTTCTGTTGATACCAATCTGTGTGATTTACGGCTAAGATTCAT] [+] EMBL CB637123 [GCAGGGAGGGTCTTCTGCAAGAA GGGTGCGACGCGGACGGCGACACCTGGGACGAGTGTGAGTATTATCATCTGCCAAATGTCGCTGTGAATTGATTCATCCGCTCATTACCCGATTTTGGTTTTGCTGATGGTTTAGTTCATCGCCGATTCAAATATTTTCCATAGGATGAGATATTTATGTTATGTTATTCGTGGCTGTCCTTGTGAATGGATGGAAAATTAATATTAGGCGTATATGCTGTACACCGTTGATGGAAATCATGTTTTGGAGTTCAATAGTACTAGTATGTGGCTAGTTATCTGACAAAATAGGCATGGTTAACATAATGACCCCCTTCATTCAGTGGAATATAGTTAAAATTTTTAATTGGTAACTTGCAGTGCTGTTTGTGTCAATGCTAGCTGCAATGAGTCATGTACTCGTGTGTACAGTGGATCGTTGGTGCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6145#0 GTCTCCGCCTCCACCCTCACCGGCGCCACGCCGACGCCTCCGCCCTCCTCGACCACCCCC 60 consensus_6145#1 ------------------------------------------------------------ consensus_6145#0 GCCCCCGACCGCGCGAGCTCCGGAGCAGTTGGCGTCGACAAGGAAGGGAGGTGAGGCGGC 120 consensus_6145#1 ------------------------------------------------------------ consensus_6145#0 GGAGATGTTCTCCGGCGAGTGGACGCCGCCGTGCGGCAGCTGCTGCACCAAGAAGTACGC 180 consensus_6145#1 ------------------------------------------------------------ consensus_6145#0 CAGCCTCGTCCAAATCCCATGGAGGGTCTTCTGCAAGAAGGGGTGCGACGCGGACGGCGA 240 consensus_6145#1 ----------------GCAGGGAGGGTCTTCTGCAAGAAGGGGTGCGACGCGGACGGCGA 44 ** **************************************** consensus_6145#0 CACCTGGGACGAGTGCATAAGTAAATGTACGGAAATATGCTACAAAGATCCTGTTTTGGA 300 consensus_6145#1 CACCTGGGACGAGTGTGAGTATTATCATCTGCCAA-ATGTCGCTGTGAAT-TGATTCATC 102 *************** * * * * ** *** * ** ** ** consensus_6145#0 AGATCACCAGTGGAGTGCA--TATATCGATCGGTC--TCCAGGACAGGAT-AGCTACTCC 355 consensus_6145#1 CGCTCATTACCCGATTTTGGTTTTGCTGATGGTTTAGTTCATCGCCGATTCAAATATTTT 162 * *** * ** * * * *** * * * ** * * * * ** * consensus_6145#0 TTGGAGTGCTTCAATGCTTGTGTTTCTGGATGTGGATATAGGTTTGACATACCAGCGGAG 415 consensus_6145#1 CCATAG-GATGAGATATTTATGTT-----ATGTTATTCGTGGCTGTCCTTGTGAATGGAT 216 ** * * ** ** **** **** * ** * * * * *** consensus_6145#0 AAAGTGGAGCAAATCAAACCAAACAGGCCATCCAAGCCACCACCACCACCACCTCCTGCA 475 consensus_6145#1 GGA--AAATTAATATTAGGCGTATATGCTTTACAC-CGTTGATGGAAATCATGTTTTGGA 273 * * ** * * * * ** * ** * * * ** * ** * consensus_6145#0 GTAGAGCGGGCCACGAATTCAGAACCTGCTGTGAAGGGTGAAGACGTGCCTTGCACATCA 535 consensus_6145#1 GTTCAATAG--TACTAGTATGTGGCTAGTTATCTGAC---AAAATAGGCATGG----TTA 324 ** * * ** * * * * * * ** * ** * * * * consensus_6145#0 GCATAATAGTAATCTATGCAGCCCCAAATTTTGTGTAACTTTTGGTGCTTCTTTCCCTCA 595 consensus_6145#1 ACATAATGACCCCCTTCATTCAGTGGAATATAGTTAAAATTTTTAA---TTGGTAACTTG 381 ****** ** *** * ** ** **** * * ** consensus_6145#0 TACTGCCTCCTTTTTTTTCTCTTTTCTGGGCTGTTTCTTTGCACCATGTGCTTGAAATTC 655 consensus_6145#1 CAGTGC-----TGTTTGTGTCAATGCTAG----CTGCAATGAGTCATGTACTCGTG-TTT 431 * *** * *** * ** * ** * * * ** ***** ** * ** consensus_6145#0 GCAGTCCACCTTAGGCTGGGCTAGATGCTAACAAGATCTTAACGATAAATCCCAAAATCT 715 consensus_6145#1 ACAGTGGATCGTTGG-TGCATTCCTTGCTCAGAAGTTTGTGTTG-TTTCTGTTGGTGCCC 489 **** * * * ** ** * **** * *** * * * * * * consensus_6145#0 TATTTATATTTTCATATGCTTGTTCATCCACATTGTATGTTAGTATGCTCCCTCCGTTCC 775 consensus_6145#1 TAGGAGCATTTT-ATTCTTCTGTTGATAC-CAATCTGTGT-GATTTACGGCTAAGATTCA 546 ** ***** ** **** ** * ** * * *** * * * * *** consensus_6145#0 TTTGTGGATGGCGCCGTTGTTAATAATACTTATAGATGGTTTATCATATCATAAACGAAA 835 consensus_6145#1 T----------------------------------------------------------- 547 * consensus_6145#0 GCTTTGTGATTATATTTAGGATGCAACACACTTGGATAATATAGAATCATTTGAAGTGTA 895 consensus_6145#1 ------------------------------------------------------------ consensus_6145#0 AATGTTTTTTTATTAAAAAAAAGACAAGCTCTAAA 930 consensus_6145#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||