These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1383 fasta sequence [CGCATTCGAAAACCTCGTCGCCGATCTCCTCCTCCTCCTCGCGAGATCTTCGAGGCTTCTCTCTTCTTCGATCTCTTCGATCCCCGTGGTGGTGGTGATCTGGTTCGCGGCGGCGGAGGAGATGGCGGCGAGCAACATCGGGATGATGGACGGGGCCTACTTCGTGGGGCGGAACGAGATCCTGGCGTGGATCAACACCACCCTGCAGCTCGGCCTCTCCAAGGTCGAGGAGGCTGCGTCGGGGGCGGTGGCGTGCCAGCTGATGGACGCGGCGCACCCGGGGGCGGTGCCGATGCACAAGGTCAACTTCGACGCCAAGACGGAGTACGA-GATGATCCAGAAC-TAC-AAAGTTCTTCAGGACGTCTTCAACAAGCTCAAGATCACCAAGCACATCGAA-GTGAACAAGCTTACCAAGGGAAGGCCCCTTGACAATCTGGAATTCATGCAATGGATGAAGCGATACTGTGATTCGGTCAATGGAGGCTTCATGAACAGTTACAATGCTTCTGAAAGAAGGGAGAGCAGCAAGGGCGGCAAAGAGACCAACAGAAGGACATCAGTGCCTTCTCAGGCGCCGGCCAAATCCTCATCCGCCACCCACAAAGCACAGGCATCATCTCATGGTGCCAAGAAGGCCAATGGGCATGCGCCGAACGCCCCTCCGTCACGGAGCGCAAAGCCGTCTCCCGCAAACTCCGCTGGACCAGCTTATGATGAACAGATCACTGAGCTGAAGCTGCTCGTCGATAGTCTCGAGAAAGAAAGAGATTTCTATTTCTCCAAGCTGAGGGATGTGGAGATCTTGTGCCAGAGCCCTGAAGTCGAGCATTTGCCGATTGTCAACGCGATTCATAAGGTACTCTACGCTGCGGAGGATGACCCCTCGATGGTGGCGGAGGCGCAGGCGATGATATCGCAGCAGCAGCAGAGTGAGCAGCCGATGCTGAGCCCAATCCTGGAGGCGTCGGAGGAGAGGCCGGCGAAGCAGGAGGTGCACAAGAGGAAGAGCATCTCCGACCTGGAGCTGGAGGAGTTCGGCATGGCGTCCAGCTCGAGGCAGAGGCTCTCCGACATCTCCGACGTGCAGCTGTGCGGATCACCTCTGACGAGCTTCACTTGAATGAATGACTGAATGAATGAAGAACACAGCAATTGGGGCACAATTTGCAGCTGTGACATTGGATTAGTACTAGATTGCTCTCTATATCTCTTTCTTTCTTTTGTTGGATTTGTTTGTTGGTTTTCCTTTGCGTTGTATTGTTGGTGGTATAATGTGTGTGCTATTTTCTTGCCTTCGGATGGTGGTTGTGCCACAGCATTTGTGGCACTTTTGAGACAATATTATTATGCAAATAGTTCGGTGATTTATGGTTAAAAAAAAAA] [+] EMBL AK108732 [CGCATTCGAAAACCTCGTCGCCGATCTCCTCCTCCTCCTCGCGAGATCTTCGAGGCTTCTCTCTTCTTCGATCTCTTCGATCCCCGTGGTGGTGGTGATCTGGTTCGCGGCGGCGGAGGAGATGGCGGCGAGCAACATCGGGATGATGGACGGGGCCTACTTCGTGGGGCGGAACGAGATCCTGGCGTGGATCAACACCACCCTGCAGCTCGGCCTCTCCAAGGTCGAGGAGGCTGCGTCGGGGGCGGTGGCGTGCCAGCTGATGGACGCGGCGCACCCGGGGGCGGTGCCGATGCACAAGGTCAACTTCGACGCCAAGACGGAGTACGA GATGATCCAGAAC TAC AAAGTTCTTCAGGACGTCTTCAACAAGCTCAAGATCACCAAGCACATCGAA GTGAACAAGCTTACCAAGGGAAGGCCCCTTGACAATCTGGAATTCATGCAATGGATGAAGCGATACTGTGATTCGGTCAATGGAGGCTTCATGAACAGTTACAATGCTTCTGAAAGAAGGGAGAGCAGCAAGGGCGGCAAAGAGACCAACAGAAGGACATCAGTGCCTTCTCAGGCGCCGGCCAAATCCTCATCCGCCACCCACAAAGCACAGGCATCATCTCATGGTGCCAAGAAGGCCAATGGGCATGCGCCGAACGCCCCTCCGTCACGGAGCGCAAAGCCGTCTCCCGCAAACTCCGCTGGACCAGCTTATGATGAACAGATCACTGAGCTGAAGCTGCTCGTCGATAGTCTCGAGAAAGAAAGAGATTTCTATTTCTCCAAGCTGAGGGATGTGGAGATCTTGTGCCAGAGCCCTGAAGTCGAGCATTTGCCGATTGTCAACGCGATTCATAAGGTACTCTACGCTGCGGAGGATGACCCCTCGATGGTGGCGGAGGCGCAGGCGATGATATCGCAGCAGCAGCAGAGTGAGCAGCCGATGCTGAGCCCAATCCTGGAGGCGTCGGAGGAGAGGCCGGCGAAGCAGGAGGTGCACAAGAGGAAGAGCATCTCCGACCTGGAGCTGGAGGAGTTCGGCATGGCGTCCAGCTCGAGGCAGAGGCTCTCCGACATCTCCGACGTGCAGCTGTGCGGATCACCTCTGACGAGCTTCACTTGAATGAATGACTGAATGAATGAAGAACACAGCAATTGGGGCACAATTTGCAGCTGTGACATTGGATTAGTACTAGATTGCTCTCTATATCTCTTTCTTTCTTTTGTTGGATTTGTTTGTTGGTTTTCCTTTGCGTTGTATTGTTGGTGGTATAATGTGTGTGCTATTTTCTTGCCTTCGGATGGTGGTTGTGCCACAGCATTTGTGGCACTTTTGAGACAAT ] [+] EMBL C91789 [ GTCGCCGATCTCCTCCTCCTCCTCGCGAGANCTTCGAGGCTTCTCTCTNCTTCGATCTCTTCGATCCCCGTGGTGGTGGTGATCTGGTTCGCGGCGGCGGAGGAGATGGCGGCGAGCAACATCGGGATGATGGACGGGGCCTACTTCGTGGGGCGGAACGAGATCCTGGCGTGGATCAACACCACCCTGCAGCTCGGCCTCTCCAAGGTCGAGGAGGCTGCGTCGGGGGCGGTGGCGTGCCAACTGATGGACGCGGCGCACCCGGGGGCGGTGCCGATGCACAAGGTCAACTTCGACGCCAAGACGGAGTNCGANAATGATCAAGAACTTACAAAATTTTTTCAGGACGTTTTCAANAAGCTCAAGATC NCAAGCACATCGAATTTAAACAAGTTTCCAAAGGGAAAGGCCCTTGAAAATTTG ] [+] EMBL AU166110 [ anCCCAATCCTGGAGGCGTCGGAGGAGAGNCCGGCGAAGCAGGAGGCGCACAAGAGGAAGAGCATCTCCGACCTGGAGCTGGAGGAGTTCGGCATGGCGTCCAGCTCGAGGCAGAGGCTCTCCGACATCTCCGACGTGCAGCTGTGCGGATCACCTCTGACGAGCTTCACTTGAATGAATGACTGAATGAATGAAGAACACAGCAATTGGGGCACAATTTGCAGCTGTGACATTGGATTAGTACTAGATTGCTCTCTATATCTCTTTCTTTCTTTTGTTGGATTTGTTTGTTGGTTTNCCTTTGCGTTGTATTGTTGGTGGTATAATGTGTGTGCTATTTTCTTG CTTCGGATGGTGGTTGTGCCACAGCATTTGTGGCACTTTTGAGACAATATTATTATGCAAATAGTTCGGTGATTTATGGTTAAAAAAAAAA] consensusID : consensus_6154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [AGAACCCCCCCCCCCCCCCCGTTTTATTAGCCCCACAAAGGGGGGGGCCTCTTCCCATATAGGNGGGCACAATTGTGGAAAGGGGCTCCGGGGNNNNNNNNNNNNNNNNNNCGACGCGGGGAGGGNNNNNNNNNNNNNNNNNNNNNNNAGTAGAGCGCCAAGGTTTTCCCAATCCCGCGCTTGTNNNTAAGCAGCGNNNNNNAAAGAGGGTTCCAGCTCCTTTAAGGGCGAATGGGGCCCGGGCCCCCCCCTAAAGGGGGCGGGGTTAAATAAGCTTATTAAGGTAACCANNNNNNNNNACGAAGAAAAGCATTTCCGAACTTGAGCTGGAGGAATTTNGGCATGGCGTCCAAGCTCGAGGCAAAGCTTTTCCGACATTTCCGACGGGCAGCTGTGCGGATCACTTTTGACGAGCTTCNCTGAATGAATGNCTGAATGAATGAAGAACNCAGCCATTGGGGCACAATTTGCAGCTGTGACATTGGATTAGTACTAGATAGCTCTCTATATCTCTTTCTATCATTTGGAGGATTTGTTTGTTGNNTGTTTCTCTTGCGGGTTATGGTGGTGGTATAATGTGTGTGCCAATATCTTTGCCTTCGGATGGTGGTTGTGGCACAGCATTTGTGGCACTTTTGAGACAATATTATTATGCTAAAAAAAAAAAAAAA] [-] EMBL CA760346 [AGAACCCCCCCCCCCCCCCCGTTTTATTAGCCCCACAAAGGGGGGGGCCTCTTCCCATATAGGNGGGCACAATTGTGGAAAGGGGCTCCGGGGNNNNNNNNNNNNNNNNNNCGACGCGGGGAGGGNNNNNNNNNNNNNNNNNNNNNNNAGTAGAGCGCCAAGGTTTTCCCAATCCCGCGCTTGTNNNTAAGCAGCGNNNNNNAAAGAGGGTTCCAGCTCCTTTAAGGGCGAATGGGGCCCGGGCCCCCCCCTAAAGGGGGCGGGGTTAAATAAGCTTATTAAGGTAACCANNNNNNNNNACGAAGAAAAGCATTTCCGAACTTGAGCTGGAGGAATTTNGGCATGGCGTCCAAGCTCGAGGCAAAGCTTTTCCGACATTTCCGACGGGCAGCTGTGCGGATCACTTTTGACGAGCTTCNCTGAATGAATGNCTGAATGAATGAAGAACNCAGCCATTGGGGCACAATTTGCAGCTGTGACATTGGATTAGTACTAGATAGCTCTCTATATCTCTTTCTATCATTTGGAGGATTTGTTTGTTGNNTGTTTCTCTTGCGGGTTATGGTGGTGGTATAATGTGTGTGCCAATATCTTTGCCTTCGGATGGTGGTTGTGGCACAGCATTTGTGGCACTTTTGAGACAATATTATTATGCTAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6154#0 CGCATTCGAAAACCTCGTCGCCGATCTCCTCCTCCTCCTCGCGAGATCTTCGAGGCTTCT 60 consensus_6154#1 ------------------------------------------------------------ consensus_6154#0 CTCTTCTTCGATCTCTTCGATCCCCGTGGTGGTGGTGATCTGGTTCGCGGCGGCGGAGGA 120 consensus_6154#1 ------------------------------------------------------------ consensus_6154#0 GATGGCGGCGAGCAACATCGGGATGATGGACGGGGCCTACTTCGTGGGGCGGAACGAGAT 180 consensus_6154#1 ------------------------------------------------------------ consensus_6154#0 CCTGGCGTGGATCAACACCACCCTGCAGCTCGGCCTCTCCAAGGTCGAGGAGGCTGCGTC 240 consensus_6154#1 ------------------------------------------------------------ consensus_6154#0 GGGGGCGGTGGCGTGCCAGCTGATGGACGCGGCGCACCCGGGGGCGGTGCCGATGCACAA 300 consensus_6154#1 ------------------------------------------------------------ consensus_6154#0 GGTCAACTTCGACGCCAAGACGGAGTACGAGATGATCCAGAACTACAAAGTTCTTCAGGA 360 consensus_6154#1 ------------------------------------------------------------ consensus_6154#0 CGTCTTCAACAAGCTCAAGATCACCAAGCACATCGAAGTGAACAAGCTTACCAAGGGAAG 420 consensus_6154#1 ------------------------------------------------------------ consensus_6154#0 GCCCCTTGACAATCTGGAATTCATGCAATGGATGAAGCGATACTGTGATTCGGTCAATGG 480 consensus_6154#1 ------------------------------------------------------------ consensus_6154#0 AGGCTTCATGAACAGTTACAATGCTTCTGAAAGAAGGGAGAGCAGCAAGGGCGGCAAAGA 540 consensus_6154#1 ------------------------------------------------------------ consensus_6154#0 GACCAACAGAAGGACATCAGTGCCTTCTCAGGCGCCGGCCAAATCCTCATCCGCCACCCA 600 consensus_6154#1 ------------------------------------------------------------ consensus_6154#0 CAAAGCACAGGCATCATCTCATGGTGCCAAGAAGGCCAATGGGCATGCGCCGAACGCCCC 660 consensus_6154#1 ------------------------------------------------------------ consensus_6154#0 TCCGTCACGGAGCGCAAAGCCGTCTCCCGCAAACTCCGCTGGACCAGCTTATGATGAACA 720 consensus_6154#1 ---------------AGAACCCCCCCCCCCC--CCCCGTTTTATTAGCCCCACAAAGGGG 43 * * ** * *** * * *** * * *** * consensus_6154#0 GATCACTGAGCTGAAGCTGCTCGTCGATAGTCTCGAGAAAGAAAGAGATTTCTATTTCTC 780 consensus_6154#1 GGGGCCTCTTCCCATATAGGNGGGC-ACAATTGTGGAAAGGGGCTCCGGGGNNNNNNNNN 102 * ** * * * * * * * * * ** * consensus_6154#0 CAAGCTGAGGGATGTGGAGATCTTGTGCCAGAGCCCTGAAGTCGAGCATTTGCCGATTGT 840 consensus_6154#1 NNNNNNNNNCGACGCGGGGA----GGGNNNNNNNNNNNNNNNNNNNNNNNAGTAGAGCGC 158 ** * ** ** * * * ** * consensus_6154#0 CAACGCGATTCATAAGGTACTCTACGCTGCGGAGGATGACCCCTCGATGGTGGCGGAGGC 900 consensus_6154#1 CAAGGTT-TTCCCA----ATCCCGCGCTT--GTNNNTAAGCAGCGNNNNNNAAAGAGGGT 211 *** * *** * * * **** * * * * * ** consensus_6154#0 GCAGGCGATGATATCGCAGCAGCAGCAGAGTGAGCAGCCGATGCTGAGCCCAATCCTGGA 960 consensus_6154#1 TCCAGC--------TCCTTTAAGGGCGAATGGGGC--CCGGGCCCCCCCCTAAAGGGGGC 261 * ** * * ** * * ** *** * ** ** ** consensus_6154#0 GGCGTCGGAGGAGAG-GCCGGCGAAGCAGGAGGTGCACAAGAGGAAGAGCATCTCCGACC 1019 consensus_6154#1 GGGGTTAAATAAGCTTATTAAGGTAACCANNNNNNNNNACGAAGAAAAGCATTTCCGAAC 321 ** ** * ** * * * * ** *** ***** ***** * consensus_6154#0 TGGAGCTGGAGGAGTT-CGGCATGGCGTCCA-GCTCGAGGCAGAGGCTCTCCGACATCTC 1077 consensus_6154#1 TTGAGCTGGAGGAATTTNGGCATGGCGTCCAAGCTCGAGGCAAAGCTTTTCCGACATTTC 381 * *********** ** ************* ********** ** * ******** ** consensus_6154#0 CGACGTGCAGCTGTGCGGATCACCTCTGACGAGCTTCACTTGAATGAATGACTGAATGAA 1137 consensus_6154#1 CGACGGGCAGCTGTGCGGATCACTTTTGACGAGCTTCNCT-GAATGAATGNCTGAATGAA 440 ***** ***************** * *********** ** ********* ********* consensus_6154#0 TGAAGAACACAGCAATTGGGGCACAATTTGCAGCTGTGACATTGGATTAGTACTAGATTG 1197 consensus_6154#1 TGAAGAACNCAGCCATTGGGGCACAATTTGCAGCTGTGACATTGGATTAGTACTAGATAG 500 ******** **** ******************************************** * consensus_6154#0 CTCTCTATATCTCTTTCTTTCTTTTGTTGGATTTGTTTGTTGGTT--TTCCTTTGCGTTG 1255 consensus_6154#1 CTCTCTATATCTCTTTCTATCATTTGGAGGATTTGTTTGTTGNNTGTTTCTCTTGCGGGT 560 ****************** ** **** ************** * *** ***** consensus_6154#0 TATTGTTGGTGGTATAATGTGTGTGCTATTTTCTT-GCCTTCGGATGGTGGTTGTGCCAC 1314 consensus_6154#1 TATGGT-GGTGGTATAATGTGTGTGCCAATATCTTTGCCTTCGGATGGTGGTTGTGGCAC 619 *** ** ******************* * * **** ******************** *** consensus_6154#0 AGCATTTGTGGCACTTTTGAGACAATATTATTATGCAAATAGTTCGGTGATTTATGGTTA 1374 consensus_6154#1 AGCATTTGTGGCACTTTTGAGACAATATTATTATGCTAAAAAAAAAAAAAAA-------- 671 ************************************ ** * * consensus_6154#0 AAAAAAAAA 1383 consensus_6154#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||