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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1306 fasta sequence
[CCAGGTTAGTGATTCTGGCGTAGCTGGGGATCGGAAGCGTTGGATGGGCTGCCGTCAGCTGTGTCGGATCGAATGCTTCGCCAGAGGCCGTCAGGTTACTGCCGGGTTCGGCATCATAGATTGCCGCCAGTCCCGCCTGGCTAAATCGAGACGGATCCTGCACGATTTTGTAGCTTTTACCGTCGCGCTGGTAATCCTGATTTGCCGTCGCGTTCAGTGGTTGAAACGACGCATCCTGAAGTGATCGCTGCCGCGGTAACTGAACAGCCGCAGGTGATTACCGAGTCTGATGTTGCCACCCGTATAAATCACCGCAAATTCGTCACCGCCGAAGCGGTAGACTTTACCTTTATCTACCGGGATCTGTGATTTAAGGATTTTCACCACTTTCATCAACACTTCATCGCCCAGCAAATGACCGAAGGTGTCGTTAATGTTTTTGAATTTATCGACGTCAAACAGGCACAAATAACCGCCTTTTTCCGGCAGCGCTTTTAAATCTTCGTCAAAGGAAATTATGCCCATTGCTTTGGTCAGGTCGTCCAGGAACGCCGAGTTATACATACTGTAGAGTTTTTTGACATCGGCAGCCGAAAAGAAAAGCCCGCCATCCAGTACGCGTTCAAAATGGTTATTAATGATGGCTTCTTTCTCCACAATACCACGATTAATCACTCTGCGTACCAGATAGAGGCAACTGGCACCCGATATCACTGCCACCAATGCGGCAAAGAAAATAATCAATGTACAAACCCGCAAATAAACATCTTTTTTATACGCAAATACATACAATCCGGTCGGCAAATAGGCGAAGTGCTCCATCGCTTCCGAAACGGTGAAGATGGCGTTTTTAGCATTATATTCATCACCGGTCACCGGTTTACCGTTCTTAAATAGAGAGAACATCAGGTTCTCGCTGTCCATCGCCAGCGATTTTGACAGTAAAGAAAAACGCTCCAGACCAAGCAAAAATATCAGACTACGATTGTGAGTTACCGGATAGAGGTAATAGACGAAGGTTTTACCGTCAAAAGAGATAAACCCTGTATTTTTGACATGTCGATACTTCACAACCTGCATAATATCTGCACAATAATTTTTCTCGAACTCCTTTACCTGAATACATTCGTCACTGGAAATCAGATAAGGACCGACATCGTACAAATAAGAGGGGGAAACCGAGTCGGCGTAAGCTGTGCGCAAACCAACCAACAGCTGTTCCTCCGTGGGATTTAGCGTGTTGATAAGATCAATTGCCACGCTACGCCGATATTCAGCAATATTTGCCACCGCAAAAGCAGTATCA]
[-] EMBL CF305727 [CCAGGTTAGTGATTCTGGCGTAGCTGGGGATCGGAAGCGTTGGATGGGCTGCCGTCAGCTGTGTCGGATCGAATGCTTCGCCAGAGGCCGTCAGGTTACTGCCGGGTTCGGCATCATAGATTGCCGCCAGTCCCGCCTGGCTAAATCGAGACGGATCCTGCACGATTTTGTAGCTTTTACCGTCGCGCTGGTAATCCTGATTTGCCGTCGCGTTCAGTGGTTGAAACGACGCATCCTGAAGTGATCGCTGCCGCGGTAACTGAACAGCCGCAGGTGATTACCGAGTCTGATGTTGCCACCCGTATAAATCACCGCAAATTCGTCACCGCCGAAGCGGTAGACTTTACCTTTATCTACCGGGATCTGTGATTTAAGGATTTTCACCACTTTCATCAACACTTCATCGCCCAGCAAATGACCGAAGGTGTCGTTAATGTTTTTGAATTTATCGACGTCAAACAGGCACAAATAACCGCCTTTTTCCGGCAGCGCTTTTAAATCTTCGTCAAAGGAAATTATGCCCATTGCTTTGGTCAGGTCGTCCAGGAACGCCGAGTTATACATACTGTAGAGTTTTTTGACATCGGCAGCCGAAAAGAAAAGCCCGCCATCCAGTACGCGTTCAAAATGGTTATTAATGATGGCTTCTTTCTC ]
[+] EMBL CF306965 [ AAGCCCGCCATCCAGTACGCGTTCAAAATGGTTATTAATGATGGCTTCTTTCTCCACAATACCACGATTAATCACTCTGCGTACCAGATAGAGGCAACTGGCACCCGATATCACTGCCACCAATGCGGCAAAGAAAATAATCAATGTACAAACCCGCAAATAAACATCTTTTTTATACGCAAATACATACAATCCGGTCGGCAAATAGGCGAAGTGCTCCATCGCTTCCGAAACGGTGAAGATGGCGTTTTTAGCATTATATTCATCACCGGTCACCGGTTTACCGTTCTTAAATAGAGAGAACATCAGGTTCTCGCTGTCCATCGCCAGCGATTTTGACAGTAAAGAAAAACGCTCCAGACCAAGCAAAAATATCAGACTACGATTGTGAGTTACCGGATAGAGGTAATAGACGAAGGTTTTACCGTCAAAAGAGATAAACCCTGTATTTTTGACATGTCGATACTTCACAACCTGCATAATATCTGCACAATAATTTTTCTCGAACTCCTTTACCTGAATACATTCGTCACTGGAAATCAGATAAGGACCGACATCGTACAAATAAGAGGGGGAAACCGAGTCGGCGTAAGCTGTGCGCAAACCAACCAACAGCTGTTCCTCCGTGGGATTTAGCGTGTTGATAAGATCAATTGCCACGCTACGCCGATATTCAGCAATATTTGCCACCGCAAAAGCAGTATCA]
consensusID : consensus_6211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 853 fasta sequence
[ACAACGGGCTGTGGCGCAGGCGTCGGTTCGCTGCCTTCCAGTACACCAGGCGCTAAGGTCGTTGGTGCGCCGAGGAAACCGCTACTGGTTACCGGCGCGCCGGTCGGATCTTCGCTTTTTAGCGTCGAATTACTGACCGGAAGAATGTCACCCTGCGGGCCAGACACTGAACTTGTTCCCGCGCCACCGCTTAAATCGGGAGGTGCAGGCAGGGCGTAAGTCTGTTTGGCGACTGTGGTACAAGCCATACCAGGACCAGAAAGCGAACCATCCTGGGCAACAATAATCGGATCGATACGAACTTTGGTGTTGTTTGACGTGTTAAGACGGTCAGCTGCCGCGCGAGAAAGTGAAATAACGCGGTCGTTGCCGTAAAGGCCGCGATCATTAATGCGCACCACGATCATTCGCCCGTTAGCCAGGTTAGTGATTCTGGCGTAGCTGGGGATCGGAAGCGTTGGATGGGCTGCCGTCAGCTGTGTCGGATCTTTTGCTTCGCCAGAGGCCGTCAGGTTACTGCCGGGTTCGGCATCTTATATTGCCGCCAGTCCCGCCTGGCTAAATCGAGACGGATCCTGCACGATTTTGTAGCTTTTACCGTCGCGCTGGTAATCCTGATTTGCCGTCGCGTTCAGTGGTTCGAAACGCGGGTCCGCCCCGCTAATTTCAACTATAGGGCCGTTACATACCGCAGGCTGCGGTACACTTACCGTCTGTTGCTGACCATCATCGCTTGTACATGCCGCGAGCATTCCTGCCGCGATGCAGATCCCTTGCCACTGCTTACGCATTGCGCACCTCTTACACGCTTTTCGACAACATTTTCCTGTGGGTGTGGATTGACATTACAATC]
[+] EMBL AU069761 [ACAACGGGCTGTGGCGCAGGCGTCGGTTCGCTGCCTTCCAGTACACCAGGCGCTAAGGTCGTTGGTGCGCCGAGGAAACCGCTACTGGTTACCGGCGCGCCGGTCGGATCTTCGCTTTTTAGCGTCGAATTACTGACCGGAAGAATGTCACCCTGCGGGCCAGACACTGAACTTGTTCCCGCGCCACCGCTTAAATCGGGAGGTGCAGGCAGGGCGTAAGTCTGTTTGGCGACTGTGGTACAAGCCATACCAGGACCAGAAAGCGAACCATCCTGGGCAACAATAATCGGATCGATACGAACTTTGGTGTTGTTTGACGTGTTAAGACGGTCAGCTGCCGCGCGAGAAAGTGAAATAACGCGGTCGTTGCCGTAAAGGCCGCGATCATTAATGCGCACCACGATCATT ]
[+] EMBL CF307221 [ AAATAACGCGGTCGTTGCCGTAAGGGCCGCGATCATTAATGCGCACCACGATCATTCGCCCGTTAGCCAGGTTAGTGATTCTGGCGTAGCTGGGGATCGGAAGCGTTGGATGGGCTGCCGTCAGCTGTGTCGGATCTTTTGCTTCGCCAGAGGCCGTCAGGTTACTGCCGGGTTCGGCATCTTATATTGCCGCCAGTCCCGCCTGGCTAAATCGAGACGGATCCTGCACGATTTTGTAGCTTTTACCGTCGCGCTGGTAATCCTGATTTGCCGTCGCGTTCAGTGGTTCGAAACGCGGGTCCGCCCCGCTAATTTCAACTATAGGGCCGTTACATACCGCAGGCTGCGGTACACTTACCGTCTGTTGCTGACCATCATCGCTTGTACATGCCGCGAGCATTCCTGCCGCGATGCAGATCCCTTGCCACTGCTTACGCATTGCGCACCTCTTACACGCTTTTCGACAACATTTTCCTGTGGGTGTGGATTGACATTACAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6211#0 CCAGGTTAGTGATTCTGGCGTAGCTGGGGATCGGAAGCGTTGGATGGGCTGCCGTCAGCT 60
consensus_6211#1 ------------------------------------------------------------
consensus_6211#0 GTGTCGGATCGAATGCTTCGCCAGAGGCCGTCAGGTTACTGCCGGGTTCGGCATCATAGA 120
consensus_6211#1 ------------------------------------------------------------
consensus_6211#0 TTGCCGCCAGTCCCGCCTGGCTAAATCGAGACGGATCCTGCACGATTTTGTAGCTTTTAC 180
consensus_6211#1 ------------------------------------------------------------
consensus_6211#0 CGTCGCGCTGGTAATCCTGATTTGCCGTCGCGTTCAGTGGTTGAAACGACGCATCCTGAA 240
consensus_6211#1 ------------------------------------------------------------
consensus_6211#0 GTGATCGCTGCCGCGGTAACTGAACAGCCGCAGGTGATTACCGAGTCTGATGTTGCCACC 300
consensus_6211#1 ------------------------------------------------------------
consensus_6211#0 CGTATAAATCACCGCAAATTCGTCACCGCCGAAGCGGTAGACTTTACCTTTATCTACCGG 360
consensus_6211#1 ---------------ACAACGGGCTGTGGCGCAGGCGTCGGTT----CGCTGCCTTCCAG 41
* * * * * ** ** ** * * * * ** ** *
consensus_6211#0 GATCTGTGATTTAAGGATTTTCACCACTTTCATCAACACTTCATCGCCCAGCAAATGACC 420
consensus_6211#1 TACACCAGGCGCTAAGGTCGTTGGTGCGCCGAGGAAACCGCTACTGGTTACCGGCGCGCC 101
* * * * * * * * ** * * * * * **
consensus_6211#0 GAAGGTGTCGTTAATGTTTTTGAATTTATCGACGTCAAACAGGCACAAATAACCGCCTTT 480
consensus_6211#1 GGTCGGATCTTC---GCTTTT-----TAGCGTCGAATTACTGACCGGAAGAATGTCACCC 153
* * ** * * **** ** ** ** ** * * ** ** *
consensus_6211#0 TTCCGGCAGCGCTTTTAAATCTTCGTCAAAGGAAATTATGCCCATTGCTTTGGTCAGGTC 540
consensus_6211#1 TGCGGGCCAGACACTGAACTTGTTCCCGCG-----------CCACCGCTTAAATCGGGAG 202
* * *** * * ** * * * *** **** ** **
consensus_6211#0 GTCCAGGAACGCCGAGTTATACATACTGTAGAGTTTTTTGACATCGGCAGCCGAAAAGAA 600
consensus_6211#1 GTGCAGGCAGGGC--GTAAGTCTGTTTGGCGACTGTGGTACAAGCCATACCAGGACCAGA 260
** **** * * * ** * * ** ** * * * * * * * * * *
consensus_6211#0 AAGCCCGCCATCCAGTACGCGTTCAA---AATGGTTATTAATGATGGCTTCTTTCTCCAC 657
consensus_6211#1 AAGCGAACCATCCTGGGCAACAATAATCGGATCGATACGAACTTTGGTGTTGTTTGACGT 320
**** ****** * * ** ** * ** ** *** * ** *
consensus_6211#0 AATACCACGATTAATCACTCTGCGTACCAGATAGAGGCAACTGGCACCCGATATCACTGC 717
consensus_6211#1 GTTAAGACGGTCAGCTGCCGCGCG------AGAAAGTGAAATAACGC----GGTCGTTGC 370
** *** * * * *** * * ** ** * * * ** ***
consensus_6211#0 CACCAATGCGGCAAAGAAAATAATCAATGTACAAACCCGCAAATAAACATCTTTTTTATA 777
consensus_6211#1 CGTAAAGGCCGCGA------TCATTAATGCGCA---CCACGATCATTCGCCCGTTAGCCA 421
* ** ** ** * * ** **** ** ** * * * * * ** *
consensus_6211#0 CGCAAATACATACAATCCGGTCGGCAAATAGGCGAAGTGCTCCATCGCTTCCGAAACGGT 837
consensus_6211#1 GGTTAGTGATTCTGGCGTAGCTGGGGATCG---GAAGCGTTGGATGGGCTGCCGTCAGCT 478
* * * * * ** * **** * * ** * * * * *
consensus_6211#0 GAAGATGGCGTTTTTAGCATTATATTCATCACCGGTCACCGGTTTACCGTTCTTAAATAG 897
consensus_6211#1 GTG--TCGGATCTTTTGC------TTCGCCAGAGGCCGTCAGGTTACTG--CCGGGTTCG 528
* * * * *** ** *** ** ** * * * **** * * * *
consensus_6211#0 AGAGAACATCAGGTTCTCGCTGTCCATCGCCAGCGATTTTGACAGTAAAGAAAAACGCTC 957
consensus_6211#1 ---GCATCTTATATTGCCGCCAGTCCCGCCTGGCTA-------AATCGAGACGGATCCTG 578
* * * * ** *** * * ** * * * *** * **
consensus_6211#0 CA-GACCAAGCAAAAATATCAGACTACGATTGTGAGTTACCGGATAGAGGTAATAGACGA 1016
consensus_6211#1 CACGATTTTGTAGCTTTTACCG-TCGCGCTGGTAA--TCCTGATTTGCCGTCGCGTTCAG 635
** ** * * * * * ** * ** * * * * * * ** *
consensus_6211#0 AGGTTTTACCGTCAAAAGAGATAAACCCTGTATTTTTGACATGTCGATACTTCACAACCT 1076
consensus_6211#1 TGGTTCGA-----AACGCGGGTCCGCCCCGCTAATTTCAACTATAGGGCCGTTACATACC 690
**** * ** * * *** * *** * * * * * * *** *
consensus_6211#0 GCATAATATCTGCACAATAATT-TTTCTCGAACTCCTTTACCTGAATACATTCGTCACTG 1135
consensus_6211#1 GCAGGCTG-CGGTACACTTACCGTCTGTTGCTGACCATCATC-GCTTGTACATGCCGCGA 748
*** * * * *** * * * * * * ** * * * * * * * * *
consensus_6211#0 GAAATCAGATAAGGACCGACATCGTACAAATAAGAGGGGGAAACCGAGTCGGCGTAAGCT 1195
consensus_6211#1 GCATTC---------CTGCCGCGATGCAGATCCCTTGCCACTGCTTACGCATTGCGCACC 799
* * ** * * * * ** ** * * * * * *
consensus_6211#0 GTGCGCAAACCAACCAACAGCTGTTCCTCCGTGGGATTTAGCGTGTTGATAAGATCAATT 1255
consensus_6211#1 TCTTACACGCTTTTCGACAAC-ATTTTCCTGTGGG-TGTGGATTGACATTACAATC---- 853
** * * *** * ** * ***** * * * ** ** ***
consensus_6211#0 GCCACGCTACGCCGATATTCAGCAATATTTGCCACCGCAAAAGCAGTATCA 1306
consensus_6211#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||