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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1170 fasta sequence
[GCAAATTCGTTAAAATCCCCTTTTGGGAATCTTCGGCCTCCCCAGCGGCAGGCAGGCAGCGCGGCGGCACGGCAGCCTCTCTCCCCTCCTCCTCCTGCTGCCCGCGTCCCCCCTTTACCTCGCATCCGCCGCGGATCTCCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTCTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCACAACTGTTTTAAGGAGACTGCTGAGACATTCTTATCCAGCACTGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAGCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGAC-AGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGC-ATTTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGCACAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGTGCCCAAGTACGTTGAGAAACTAGAGGACTTTATGGCCCTCCTAGCTTATGAAGAGCCTGAGAAGTCACCTATGTTTCATCTACTAAGCCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTGTTCTTGCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAGGGCTCCAGTCCTATGGCCACCAGAGTTCCCTTCAGAATGTGTAAAACAGTTGCGTGAAAGCAAGCGACGGGATGCTCATGCACATATTATTCAGAGAACCGCCTTCTGGATTAAACGATATCATCAGTGGTGTACCAACAATATCATCTGCATCGAAAGAGGAATGTTGTATAACTGTTGTTTCCTCATTTACAGTTCCCCATTTCCCCTTTACCCGTTGACGCCATCGAAAGTTGTACATATCAGAACCTTGAGCTATTCTGTATGTTCGTGCAGAGATATCGTCAGTTTGAACCAATCTGCAGTGCACTTATTACTATGCCTGATGCT]
[+] EMBL AK122081 [GCAAATTCGTTAAAATCCCCTTTTGGGAATCTTCGGCCTCCCCAGCGGCAGGCAGGCAGCGCGGCGGCACGGCAGCCTCTCTCCCCTCCTCCTCCTGCTGCCCGCGTCCCCCCTTTACCTCGCATCCGCCGCGGATCTCCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTCTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCACAACTGTTTTAAGGAGACTGCTGAGACATTCTTATCCAGCACTGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAGCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGAC AGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGC ATTTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGCACAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGTGCCCAAGTACGTTGAGAAACTAGAGGACTTTATGGCCCTCCTAGCTTATGAAGAGCCTGAGAAGTCACCTATGTTTCATCTACTAAGCCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTGTTCTTGCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAGGGCTCCAGTCCTATGGCCACCAGAGTTCCCTTCAGAATGTGTAAAACAGTTGCGTGAAAGCAAGCGACGGGATGCTCATGCACATATTATTCAGAGAACCGCCTTCTGGATTAAACGATATCATCAGTGGTGTACCAACAATATCATCTGCATCGAAAGAGGAATGTTGTATAACTGTTGTTTCCTCATTTACAGTTCCCCATTTCCCCTTTACCCGTTGACGCCATCGAAAGTTGTACATATCAGAACCTTGAGCTATTCTGTATGTTCGTGCAGAGATATCGTCAGTTTGAACCAATCTGCAGTGCACTTATTACTATGCCTGATG ]
[+] EMBL OSS14217A [ CCCCTTTTGGGAATCTTCGGCCTCCCCAGCGGCAGGCAGGCAGCGCGGCTGCACGGCAGCCTCTCTCCCCTCCTCCTCCTGCTNCCCGCGTCCCCCCTTTACCTCGCATCCNCCGCGGATCTCCGNCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTCTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCACAACTGTTTTAAGGAGACTGCTGAGACATTCTTATCCAGCACTGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAG GATTTTTAGTTTTGTGTTGGAAGGCAATG CCTGAAGGCTATAGACCTGACAAGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGCAATTTTGATCTTTTAAGNCTTCACTTCA ]
[+] EMBL AK060390 [ ATCTTCGGCCTCCCCAGCGGCAGGCAGGCAGCGCGGCGGCACGGCAGCCTCTCTCCCCTCCTCCTCCTGCTGCCCGCGTCCCCCCTTTACCTCGCATCCGCCGCGGATCTCCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTCTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCACAACTGTTTTAAGGAGACTGCTGAGACATTCTTATCCAGCACTGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAGCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGAC AGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGC ATTTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGCACAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGTGCCCAAGTACGTTGAGAAACTAGAGGACTTTATGGCCCTCCTAGCTTATGAAGAGCCTGAGAAGTCACCTATGTTTCATCTACTAAGCCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTGTTCTTGCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAGGGCTCCAGTCCTATGGCCACCAGAGTTCCCTTCAGAATGTGTAAAACAGTTGCGTGAAAGCAAGCGACGGGATGCTCATGCACATATTATTCAGAGAACCGCCTTCTGGATTAAACGATATCATCAGTGGTGTACCAACAATATCATCTGCATCGAAAGAGGAATGTTGTATAACTGTTGTTTCCTCATTTACAGTTCCCCATTTCCCCTTTACCCGTTGACGCCATCGAAAGTTGTACATATCAGAACCTTGAGCTATTCTGTATGTTCGTGCAGAGATATCGTCAGTTTGAACCAATCTGCAGTGCACTTATTACTATGCCTGATGCT]
consensusID : consensus_6228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 869 fasta sequence
[GCGGCACGGCAGCCTCTCTCCCCTCCTCCTCCTGCTGCCCGCGTCCCCCCTTTACCTCGCATCCGCCGCGGATCTCCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTCCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGACAGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGCATTTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGCACAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGTGCCCAAGTACGTTGAGAAACTAGAGGACTTTATGGCCCTCCTAGCTTATGAAGAGCCTGAGAAGTCACCTATGTTTCATCTACTAAGCCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTGTTCTTGCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAGGGCTCCAGTCCTATGGCCACCAGAGTTCCCTTCAGAATGTGTAAAACAGTTGCGTGAAAGCAAGCGACGGGATGCTCATGCACATATTATTCAGAGAACCGCCTTCTGGATTAAACGATATCATCAGTGGTGTACCAACAATATCATCTGCATCGAAAGAGGAATGTTGTATAACTGTTGTTTCCTCATTTACAGTTCCCCATTTCCCCTTTNACCGTTGACGCCATCGAAAGT]
[+] EMBL CB660611 [GCGGCACGGCAGCCTCTCTCCCCTCCTCCTCCTGCTGCCCGCGTCCCCCCTTTACCTCGCATCCGCCGCGGATCTCCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTCCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGACAGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGCATTTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGCACAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGTGCCCAAGTACGTTGAGAAACTAGAGGACTTTATGGCCCTCCTAGCTTATGAAGAGCCTGAGAAGTCACCTATGTTTCATCTACTAAGCCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTGTTCTTGCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAGGGCTCCAGTCCTATGGCCACCAGAGTTCCCTTCAGAATGTGTAAAACAGTTGCGTGAAAGCAAGCGACGGGATGCTCATGCACATATTATTCAGAGAACCGCCTTCTGGATTAAACGATATCATCAGTGGTGTACCAACAATATCATCTGCATCGAAAGAGGAATGTTGTATAACTGTTGTTTCCTCATTTACAGTTCCCCATTTCCCCTTTNACCGTTGACGCCATCGAAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6228#0 GCAAATTCGTTAAAATCCCCTTTTGGGAATCTTCGGCCTCCCCAGCGGCAGGCAGGCAGC 60
consensus_6228#1 ------------------------------------------------------------
consensus_6228#0 GCGGCGGCACGGCAGCCTCTCTCCCCTCCTCCTCCTGCTGCCCGCGTCCCCCCTTTACCT 120
consensus_6228#1 ---GCGGCACGGCAGCCTCTCTCCCCTCCTCCTCCTGCTGCCCGCGTCCCCCCTTTACCT 57
*********************************************************
consensus_6228#0 CGCATCCGCCGCGGATCTCCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACG 180
consensus_6228#1 CGCATCCGCCGCGGATCTCCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACG 117
************************************************************
consensus_6228#0 AGAACGTCTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCACA 240
consensus_6228#1 AGAACGTC---------------------------------------------------- 125
********
consensus_6228#0 ACTGTTTTAAGGAGACTGCTGAGACATTCTTATCCAGCACTGGTTTGGAACTGCCTGTTG 300
consensus_6228#1 ------------------------------------------------------------
consensus_6228#0 ATTACACTGTAGATGTAGATAAGCGTAAAGCGATTTTTAGTTTTGTGTTGGAAGGCAATG 360
consensus_6228#1 ------------------------------CGATTTTTAGTTTTGTGTTGGAAGGCAATG 155
******************************
consensus_6228#0 CCCTGAAGGCTATAGACCTGACAGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGG 420
consensus_6228#1 CCCTGAAGGCTATAGACCTGACAGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGG 215
************************************************************
consensus_6228#0 ATTTGCATTTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGCA 480
consensus_6228#1 ATTTGCATTTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGCA 275
************************************************************
consensus_6228#0 CAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGTGCCCAAGTACG 540
consensus_6228#1 CAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGTGCCCAAGTACG 335
************************************************************
consensus_6228#0 TTGAGAAACTAGAGGACTTTATGGCCCTCCTAGCTTATGAAGAGCCTGAGAAGTCACCTA 600
consensus_6228#1 TTGAGAAACTAGAGGACTTTATGGCCCTCCTAGCTTATGAAGAGCCTGAGAAGTCACCTA 395
************************************************************
consensus_6228#0 TGTTTCATCTACTAAGCCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTG 660
consensus_6228#1 TGTTTCATCTACTAAGCCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTG 455
************************************************************
consensus_6228#0 TTCTTGCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAA 720
consensus_6228#1 TTCTTGCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAA 515
************************************************************
consensus_6228#0 CTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGGATTCTTACCCGCCATTTTCTT 780
consensus_6228#1 CTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGGATTCTTACCCGCCATTTTCTT 575
************************************************************
consensus_6228#0 TGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAG 840
consensus_6228#1 TGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAG 635
************************************************************
consensus_6228#0 GGCTCCAGTCCTATGGCCACCAGAGTTCCCTTCAGAATGTGTAAAACAGTTGCGTGAAAG 900
consensus_6228#1 GGCTCCAGTCCTATGGCCACCAGAGTTCCCTTCAGAATGTGTAAAACAGTTGCGTGAAAG 695
************************************************************
consensus_6228#0 CAAGCGACGGGATGCTCATGCACATATTATTCAGAGAACCGCCTTCTGGATTAAACGATA 960
consensus_6228#1 CAAGCGACGGGATGCTCATGCACATATTATTCAGAGAACCGCCTTCTGGATTAAACGATA 755
************************************************************
consensus_6228#0 TCATCAGTGGTGTACCAACAATATCATCTGCATCGAAAGAGGAATGTTGTATAACTGTTG 1020
consensus_6228#1 TCATCAGTGGTGTACCAACAATATCATCTGCATCGAAAGAGGAATGTTGTATAACTGTTG 815
************************************************************
consensus_6228#0 TTTCCTCATTTACAGTTCCCCATTTCCCCTTTACCCGTTGACGCCATCGAAAGTTGTACA 1080
consensus_6228#1 TTTCCTCATTTACAGTTCCCCATTTCCCCTTTNACCGTTGACGCCATCGAAAGT------ 869
******************************** ********************
consensus_6228#0 TATCAGAACCTTGAGCTATTCTGTATGTTCGTGCAGAGATATCGTCAGTTTGAACCAATC 1140
consensus_6228#1 ------------------------------------------------------------
consensus_6228#0 TGCAGTGCACTTATTACTATGCCTGATGCT 1170
consensus_6228#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||