These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1690 fasta sequence [CGGCGGCGGTTTGGTTTCCCTCTTGTTTGTATTTTAATCCGTCGTGGGTGGGTGATGGAGGTGGAGCGTCGTGGTGGTGGGGAGGTGAACGGGGTGGTGGAGATGGAGGACGCGGTGGGGATACTGGTGGACTACCTGGTGCGGCCGGCGCTGCGGAAGGGGAGCAGGATGACGCCGGAGAACCAGGCCGACGTCGCGCGCCAGGTTCATATGGCAGTCATTCTGTATAACTATTACCACCGGAAGCAGTTCCCACAGCTTGCTTTTGCTGATGCAATGAGGTTCTTCAAATGTGCATCTCTTACTCTTGGTGACAGTTTGCTCGCGTACTCCAATATGGTCCACCAACATGAGAAGAGTTCTGGAAGTCCTGGGGAGGGTGTGAATCTCTCTGTGACTGACAAAGCAGTCGTGGATGCGTGTGGAATTGCTGAAGCCCTCGACGCAAACCAAGACTCTCCAGACATGGCCATGTGGCCAATTTCAAAGGTCGCTGTGCTTCTTCTTGATTCAACTAGGAAAAGATGTCTGCTGGAGAGTGGTTCTGTCGGTAAAAATGTTCGCTCCCTTTTGGAGAAAGAGATTGACAGTGAGATACCCAGAGTTAAAAATGCACTGCCTCCTGTTGTAGATGTGTCAACTATGAAGTTCGTGAGCTGTTCAGTTAATGTAAAAGAAACAGCAGCAGCAAATGCAGGATTTGTGGATATGGAAGCAGGTGTTAAAATGAACAGCAACAAAAGAAGAGAGAATCACTCTCTAGACTTAAATATTTCTCATGATATGGCTATGGAGAAGGCACTTGTAATAAAGAATACTGAGTTGGAATGGAGAAGTGCAGAAGTGTCAAAAAAGTCAGATTTTCATCAAGGTGGCGGTGCTAAGGACAACAAGGATCTGAAGTTTGCTTCCTTCAAGTCATATCTGAAAAAACGGGATGATCTTCATCGCAAGCAACGCATGATTGAAGATGAAACTGTTCAATTTGATATGGACATCCAGTCAGTCTTTGCTGGAGGG-GAGTGGACACCAGAAGCGATGTCACTACTAGAAAAATATGGAATTCTTGTCGATAGCTTAGATATGGT-GGAAGTTAATGGTTCATCCTATTCTGGAGATGGATATGAAACCTTAACCATTGAGAGGAAGAAATTGACAGTGGAAAGACTCCTCCGCAATAAATGCCAGGAGTTGGATGAGGTCTGCCGTGAGAATAATTGGATTCTTCCGAGATATAAAGTTATGCCATCACTAACAGATGGCATGTACGTGGCCAATGTAGATATTGCATGCCTGGAGTTCAGCCAAATGACATTTGGCGATCCAAAGACGAACCCTCGTGATGCACGGGAGTCTGCAGCTGCCAACCTGCTGGCTGAGCTTCTTAAGAAGGCCGATGCCAACAGGGAGCACACCTGACGCAAGATTACTGAAGTAAACACCTGAAAATTGGTAGACGGCAGGTAGCTGCAAAGCTGCAACTCAGCACTGAACTTTCTGAAAGACATCACCTTCATTTAGACATTTTACCTTACATTGGTTACTCTTGTCATTCAAACTGTAGCTGTTGCTTTTTTAATAATTCTTCGGTCGCAAATTATGTGACGCTGCAGGTGCAGTGTGAATTTTGTAGTCATTTTAAACAATAGATCTTGGTGAACATGTCTGTTTCTGCCTCAAAAAAAAAAAA] [+] EMBL AB097944 [CGGCGGCGGTTTGGTTTCCCTCTTGTTTGTATTTTAATCCGTCGTGGGTGGGTGATGGAGGTGGAGCGTCGTGGTGGTGGGGAGGTGAACGGGGTGGTGGAGATGGAGGACGCGGTGGGGATACTGGTGGACTACCTGGTGCGGCCGGCGCTGCGGAAGGGGAGCAGGATGACGCCGGAGAACCAGGCCGACGTCGCGCGCCAGGTTCATATGGCAGTCATTCTGTATAACTATTACCACCGGAAGCAGTTCCCACAGCTTGCTTTTGCTGATGCAATGAGGTTCTTCAAATGTGCATCTCTTACTCTTGGTGACAGTTTGCTCGCGTACTCCAATATGGTCCACCAACATGAGAAGAGTTCTGGAAGTCCTGGGGAGGGTGTGAATCTCTCTGTGACTGACAAAGCAGTCGTGGATGCGTGTGGAATTGCTGAAGCCCTCGACGCAAACCAAGACTCTCCAGACATGGCCATGTGGCCAATTTCAAAGGTCGCTGTGCTTCTTCTTGATTCAACTAGGAAAAGATGTCTGCTGGAGAGTGGTTCTGTCGGTAAAAATGTTCGCTCCCTTTTGGAGAAAGAGATTGACAGTGAGATACCCAGAGTTAAAAATGCACTGCCTCCTGTTGTAGATGTGTCAACTATGAAGTTCGTGAGCTGTTCAGTTAATGTAAAAGAAACAGCAGCAGCAAATGCAGGATTTGTGGATATGGAAGCAGGTGTTAAAATGAACAGCAACAAAAGAAGAGAGAATCACTCTCTAGACTTAAATATTTCTCATGATATGGCTATGGAGAAGGCACTTGTAATAAAGAATACTGAGTTGGAATGGAGAAGTGCAGAAGTGTCAAAAAAGTCAGATTTTCATCAAGGTGGCGGTGCTAAGGACAACAAGGATCTGAAGTTTGCTTCCTTCAAGTCATATCTGAAAAAACGGGATGATCTTCATCGCAAGCAACGCATGATTGAAGATGAAACTGTTCAATTTGATATGGACATCCAGTCAGTCTTTGCTGGAGGG GAGTGGACACCAGAAGCGATGTCACTACTAGAAAAATATGGAATTCTTGTCGATAGCTTAGATATGGT GGAAGTTAATGGTTCATCCTATTCTGGAGATGGATATGAAACCTTAACCATTGAGAGGAAGAAATTGACAGTGGAAAGACTCCTCCGCAATAAATGCCAGGAGTTGGATGAGGTCTGCCGTGAGAATAATTGGATTCTTCCGAGATATAAAGTTATGCCATCACTAACAGATGGCATGTACGTGGCCAATGTAGATATTGCATGCCTGGAGTTCAGCCAAATGACATTTGGCGATCCAAAGACGAACCCTCGTGATGCACGGGAGTCTGCAGCTGCCAACCTGCTGGCTGAGCTTCTTAAGAAGGCCGATGCCAACAGGGAGCACACCTGACGCAAGATTACTGAAGTAAACACCTGAAAATTGGTAGACGGCAGGTAGCTGCAAAGCTGCAACTCAGCACTGAACTTTCTGAAAGACATCACCTTCATTTAGACATTTTACCTTACATTGGTTACTCTTGTCATTCAAACTGTAGCTGTTGCTTTTTTAATAATTCTTCGGTCGCAAATTATGTGACGCTGCAGGTGCAGTGTGAATTTTGTAGTCATTTTAAACAATAGATCTTGGTGAACATGTCTGTTTCTGCCTCAAAAAAAAAAAA] [+] EMBL CF322510 [ TTAAAATGAACAGCAACAAAAGAAGAGAGAATCACTCTCTAGACTTAAATATTTCTCATGATATGGCTATGGAGAAGGCACTTGTAATAAAGAATACTGAGTTGGAATGGAGAAGTGCAGAAGTGTCAAAAAAGTCAGATTTTCATCAAGGTGGCGGTGCTAAGGACAACAAGGATCTGAAGTTTGCTTCCTTCAAGTCATATCTGAAAAAACGGGATGATCTTCATCGCAAGCAACGCATGATTGAAGATGAAACTGTTCAATTTGATATGGACATCCAGTCAGTCTTTGCTGGAGGGNGAGTGGACACCAGAAGCGATGTCACTACTAGAAAAATATGGAATTCTTGTCGATAGCTTAGATATGGTGGGAAGTTAATGGTTCATCCTATTCTGGAGATGGATATGAAACCTTAACCATTGAGAGGAAGAAATTGACAGTGGAAAGACTCCTCCGCAATAAAT ] consensusID : consensus_6247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 182 fasta sequence [TACCTTACATTGGTTACTCTTGTCATTCAAACTGTAGCTGTTGCTTTTTTAATAATTCTTCGGTCGCAAATTATGTGACGCTGCAGGTGCAGTGTGAATTTTGTAGTCATTTTAAACAATAGATCTTGGTGAACATGTCTGTTTCTGCCTCATGGTTTTGCTGTAGGCTTTGTCCGCAAAAA] [+] EMBL CF331394 [TACCTTACATTGGTTACTCTTGTCATTCAAACTGTAGCTGTTGCTTTTTTAATAATTCTTCGGTCGCAAATTATGTGACGCTGCAGGTGCAGTGTGAATTTTGTAGTCATTTTAAACAATAGATCTTGGTGAACATGTCTGTTTCTGCCTCATGGTTTTGCTGTAGGCTTTGTCCGCAAAA ] [-] EMBL CF331393 [ ACCTTACATTGGTTACTCTTGTCATTCAAACTGTAGCTGTTGCTTTTTTAATAATTCTTCGGTCGCAAATTATGTGACGCTGCAGGTGCAGTGTGAATTTTGTAGTCATTTTAAACAATAGATCTTGGTGAACATGTCTGTTTCTGCCTCATGGTTTTGCTGTAGGCTTTGTCCGCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6247#0 CGGCGGCGGTTTGGTTTCCCTCTTGTTTGTATTTTAATCCGTCGTGGGTGGGTGATGGAG 60 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 GTGGAGCGTCGTGGTGGTGGGGAGGTGAACGGGGTGGTGGAGATGGAGGACGCGGTGGGG 120 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 ATACTGGTGGACTACCTGGTGCGGCCGGCGCTGCGGAAGGGGAGCAGGATGACGCCGGAG 180 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 AACCAGGCCGACGTCGCGCGCCAGGTTCATATGGCAGTCATTCTGTATAACTATTACCAC 240 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 CGGAAGCAGTTCCCACAGCTTGCTTTTGCTGATGCAATGAGGTTCTTCAAATGTGCATCT 300 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 CTTACTCTTGGTGACAGTTTGCTCGCGTACTCCAATATGGTCCACCAACATGAGAAGAGT 360 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 TCTGGAAGTCCTGGGGAGGGTGTGAATCTCTCTGTGACTGACAAAGCAGTCGTGGATGCG 420 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 TGTGGAATTGCTGAAGCCCTCGACGCAAACCAAGACTCTCCAGACATGGCCATGTGGCCA 480 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 ATTTCAAAGGTCGCTGTGCTTCTTCTTGATTCAACTAGGAAAAGATGTCTGCTGGAGAGT 540 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 GGTTCTGTCGGTAAAAATGTTCGCTCCCTTTTGGAGAAAGAGATTGACAGTGAGATACCC 600 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 AGAGTTAAAAATGCACTGCCTCCTGTTGTAGATGTGTCAACTATGAAGTTCGTGAGCTGT 660 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 TCAGTTAATGTAAAAGAAACAGCAGCAGCAAATGCAGGATTTGTGGATATGGAAGCAGGT 720 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 GTTAAAATGAACAGCAACAAAAGAAGAGAGAATCACTCTCTAGACTTAAATATTTCTCAT 780 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 GATATGGCTATGGAGAAGGCACTTGTAATAAAGAATACTGAGTTGGAATGGAGAAGTGCA 840 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 GAAGTGTCAAAAAAGTCAGATTTTCATCAAGGTGGCGGTGCTAAGGACAACAAGGATCTG 900 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 AAGTTTGCTTCCTTCAAGTCATATCTGAAAAAACGGGATGATCTTCATCGCAAGCAACGC 960 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 ATGATTGAAGATGAAACTGTTCAATTTGATATGGACATCCAGTCAGTCTTTGCTGGAGGG 1020 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 GAGTGGACACCAGAAGCGATGTCACTACTAGAAAAATATGGAATTCTTGTCGATAGCTTA 1080 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 GATATGGTGGAAGTTAATGGTTCATCCTATTCTGGAGATGGATATGAAACCTTAACCATT 1140 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 GAGAGGAAGAAATTGACAGTGGAAAGACTCCTCCGCAATAAATGCCAGGAGTTGGATGAG 1200 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 GTCTGCCGTGAGAATAATTGGATTCTTCCGAGATATAAAGTTATGCCATCACTAACAGAT 1260 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 GGCATGTACGTGGCCAATGTAGATATTGCATGCCTGGAGTTCAGCCAAATGACATTTGGC 1320 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 GATCCAAAGACGAACCCTCGTGATGCACGGGAGTCTGCAGCTGCCAACCTGCTGGCTGAG 1380 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 CTTCTTAAGAAGGCCGATGCCAACAGGGAGCACACCTGACGCAAGATTACTGAAGTAAAC 1440 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 ACCTGAAAATTGGTAGACGGCAGGTAGCTGCAAAGCTGCAACTCAGCACTGAACTTTCTG 1500 consensus_6247#1 ------------------------------------------------------------ consensus_6247#0 AAAGACATCACCTTCATTTAGACATTTTACCTTACATTGGTTACTCTTGTCATTCAAACT 1560 consensus_6247#1 ---------------------------TACCTTACATTGGTTACTCTTGTCATTCAAACT 33 ********************************* consensus_6247#0 GTAGCTGTTGCTTTTTTAATAATTCTTCGGTCGCAAATTATGTGACGCTGCAGGTGCAGT 1620 consensus_6247#1 GTAGCTGTTGCTTTTTTAATAATTCTTCGGTCGCAAATTATGTGACGCTGCAGGTGCAGT 93 ************************************************************ consensus_6247#0 GTGAATTTTGTAGTCATTTTAAACAATAGATCTTGGTGAACATGTCTGTTTCTGCCTCAA 1680 consensus_6247#1 GTGAATTTTGTAGTCATTTTAAACAATAGATCTTGGTGAACATGTCTGTTTCTGCCTCAT 153 *********************************************************** consensus_6247#0 AAAAAAAAAA------------------- 1690 consensus_6247#1 GGTTTTGCTGTAGGCTTTGTCCGCAAAAA 182 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||