These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [AAGGAAGGGGGGTGGTGTGAGCTCGCTGATCCATCCATATATAACGCATGTCCAGAGCATAAGGTATTGAGATGCATTCATGTCGGCCTGATGTGCGTACAGGAGAGTCCCATCAATCGGCCTACCATGACCGAGATAATTTCAGCGCTTGATAACGAAAGCACCACCCTGCCTGAACCGAAGCAGCCTGCCTTCGTCTCCGCTGGGATTTGGACTGAAGCTGGTGTTCACGGAGGAACACACTCCATAAACGGAATGACAATTTCCGACACGCAAGGTAGATAGTATCATGTCAATTAATTGGTGCCTCTTAATTGAACCTTCCTGATGTGAAACTCTAAAGAACTTAGCAACCGGGTATGCTTTGCAAGGGTGGTCAGAGGTGTATCTATACGGTATCTACATAGAGCTTAGGGGGGTAGGGGGGTGGATACAATTTTCCCGAAAACAGCACACCGAACCGAAACAACGGTTTCCTCAGTGTTTGGAGTGACGTTCGGTTTTCCTTTTTACATACTTGGGTGATCGGTGTGTGGCTCGGCTTTTGTTAAATTGAAACCGATAATAACGTATAAATCGAGGTACTAT] [+] EMBL CA765415 [AAGGAAGGGGGGTGGTGTGAGCTCGCTGATCCATCCATATATAACGCATGTCCAGAGCATAAGGTATTGAGATGCATTCATGTCGGCCTGATGTGCGTACAGGAGAGTCCCATCAATCGGCCTACCATGACCGAGATAATTTCAGCGCTTGATAACGAAAGCACCACCCTGCCTGAACCGAAGCAGCCTGCCTTCGTCTCCGCTGGGATTTGGACTGAAGCTGGTGTTCACGGAGGAACACACTCCATAAACGGAATGACAATTTCCGACACGCAAGGTAGATAGTATCATGTCAATTAATTGGTGCCTCTTAATTGAACCTTCCTGATGTGAAACTCTAAAGAACTTAGCAACCGGGTATGCTTTGCAAGGGTGGTCAGAGGTGTATCTATACGGTATCTACATAGAGCTTAGGGGGGTAGGGGGGTGGATACAATTTTCCCGAAAACAGCACACCGAACCGAAACAACGGTTTCCTCAGTGTTTGGAGTGACGTTCGGTTTTCCTTTTTACATACTTGGGTGATCGGTGTGTGGCTCGGCTTTTGTTAAATTGAAACCGATAATAACGTATAAATCGAGGTACTAT] consensusID : consensus_626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [GAGGAACACACTCCAGACGGAATGACAANTTCCGACACGCAAGTTAGANTAGTATCATGGTCAAGTTTATTGAGGCCTCTGTAATTGAACCTTCCTGATGTGAAACTTTATATAGAACTTATCATACCGGGTATGGTGTTTGCAAGGTCGGTCAGAGTGTGTATCATATACGGNATCTACATAGAGCTTAGAGGGGTAGGTACCGTAGGGTGTGGGTTACAATTTTCCCGAATAACCGCACACCGATACCGAAACAACAGGTTTCTCGGTGTTTGGAGTGACGTTCGGTNTTCCTTTTTACATACTTGGGTGATCGGTGTGTGGCTCGTTTTGNATATACCGTATAAACCGAGGTCTATATTGTAACCTNGCACATCAACAAAAAAAAAA] [+] EMBL BI806210 [GAGGAACACACTCCAGACGGAATGACAANTTCCGACACGCAAGTTAGANTAGTATCATGGTCAAGTTTATTGAGGCCTCTGTAATTGAACCTTCCTGATGTGAAACTTTATATAGAACTTATCATACCGGGTATGGTGTTTGCAAGGTCGGTCAGAGTGTGTATCATATACGGNATCTACATAGAGCTTAGAGGGGTAGGTACCGTAGGGTGTGGGTTACAATTTTCCCGAATAACCGCACACCGATACCGAAACAACAGGTTTCTCGGTGTTTGGAGTGACGTTCGGTNTTCCTTTTTACATACTTGGGTGATCGGTGTGTGGCTCGTTTTGNATATACCGTATAAACCGAGGTCTATATTGTAACCTNGCACATCAACAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_626#0 AAGGAAGGGGGGTGGTGTGAGCTCGCTGATCCATCCATATATAACGCATGTCCAGAGCAT 60 consensus_626#1 ------------------------------------------------------------ consensus_626#0 AAGGTATTGAGATGCATTCATGTCGGCCTGATGTGCGTACAGGAGAGTCCCATCAATCGG 120 consensus_626#1 ------------------------------------------------------------ consensus_626#0 CCTACCATGACCGAGATAATTTCAGCGCTTGATAACGAAAGCACCACCCTGCCTGAACCG 180 consensus_626#1 ------------------------------------------------------------ consensus_626#0 AAGCAGCCTGCCTTCGTCTCCGCTGGGATTTGGACTGAAGCTGGTGTTCACGGAGGAACA 240 consensus_626#1 ----------------------------------------------------GAGGAACA 8 ******** consensus_626#0 CACTCCATAAACGGAATGACAATTTCCGACACGCAAGGTAGAT-AGTATCATG-TCAA-T 297 consensus_626#1 CACTCCA--GACGGAATGACAANTTCCGACACGCAAGTTAGANTAGTATCATGGTCAAGT 66 ******* ************ ************** **** ********* **** * consensus_626#0 TAATTGGTGCCTCT-TAATTGAACCTTCCTGATGTGAAACTCTAAA--GAACTTAGCA-A 353 consensus_626#1 TTATTGAGGCCTCTGTAATTGAACCTTCCTGATGTGAAACTTTATATAGAACTTATCATA 126 * **** ****** ************************** ** * ******* ** * consensus_626#0 CCGGGTATGCT--TTGCAAGGGTGGTCAGAG-GTGTATC-TATACGGTATCTACATAGAG 409 consensus_626#1 CCGGGTATGGTGTTTGCAAGGTCGGTCAGAGTGTGTATCATATACGGNATCTACATAGAG 186 ********* * ******** ******** ******* ******* ************ consensus_626#0 CTTAGGGGGGTAGG--------GGGGTGGAT-ACAATTTTCCCGAA-AACAGCACACCGA 459 consensus_626#1 CTTAGAGGGGTAGGTACCGTAGGGTGTGGGTTACAATTTTCCCGAATAACCGCACACCGA 246 ***** ******** ** **** * ************** *** ********* consensus_626#0 -ACCGAAACAACGGTTTCCTCAGTGTTTGGAGTGACGTTCGGTTTTCCTTTTTACATACT 518 consensus_626#1 TACCGAAACAACAGGTTTCTCGGTGTTTGGAGTGACGTTCGGTNTTCCTTTTTACATACT 306 *********** * ** *** ********************* **************** consensus_626#0 TGGGTGATCGGTGTGTGGCTCGGCTTTTGTTAA--ATTGAAACCGATAATAACGT-ATAA 575 consensus_626#1 TGGGTGATCGGTGTGTGGCTCGTTTTGNATATACCGTATAAACCGAGGTCTATATTGTAA 366 ********************** ** * * * ******* * * *** consensus_626#0 ATCGAGGTACTAT----------- 588 consensus_626#1 CCTNGCACATCAACAAAAAAAAAA 390 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||