These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 582 fasta sequence [GGCGGAATTGTAGCACCAGCTTTTGGCGACAAGTGGGACGAAGAAGCGTGTGCTGTTCTTCAGAAGGCATTTCCTGATCATGAGGTGGTGATGGTGGAAGGCGCAAGAGAGATCGTGCTGGCAGGGGGAAACATACACTGCATCACGCAGCAGCAGCCTGTACGCCCGTCGTAGATGATACTGCGTATATAGTATTATGAATTTGGACATGGGACTAGTCCAGATTCGTAGTACTATATGTCCAGGGAGTAGATGGCACTATAGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACATCATTTGCTACCCAAAATGGCGACCCGATCATACACCATTGATTACCCAAAACCAAATGAATGAATTGATAGATTACCCAAAACCAAATGAATGAGTTGATAGAATAAGGCCGCAGACAAACATTGTGATTTGTGAGCTTGTGTGTAGGGGATGTGGTTGCACCAGCGTGATGGATATGGTTGTAAGTTGCAGTAGTGTAAGCACGTTGGAAACTGCCTTATGGCCTTTGCCACGTTGACCAGGCGAATGGAAATGAAAATGGCTTTGAGGCAAAAAAAAAA] [+] EMBL CF323296 [GGCGGAATTGTAGCACCAGCTTTTGGCGACAAGTGGGACGAAGAAGCGTGTGCTGTTCTTCAGAAGGCATTTCCTGATCATGAGGTGGTGATGGTGGAAGGCGCAAGAGAGATCGTGCTGGCAGGGGGAAACATACACTGCATCACGCAGCAGCAGCCTGTACGCCCGTCGTAGATGATACTGCGTATATAGTATTATGAATTTGGACATGGGACTAGTCCAGATTCGTAGTACTATATGTCCAGGGAGTAGATGGCACTATAGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACATCATTTGCTACCCAAAATGGCGACCCGATCATACACCATTGATTACCCAAAACCAAATGAATGAATTGATAGATTACCCAAAACCAAATGAATGAGTTGATAGAATAAGGCCGCAGACAAACATTGTGATTTGT ] [+] EMBL BI813651 [ GCGTGTCCTGTTCTTCAGAAGCCATTTCCTGATCATGA GT GTGATGGTGGAAGGCGCAAGAGAGATCGTGCT GCAGGTGGAAACATACCCTGCATCACGCAGCA CAGCCTGTACGCCCGTCGTAGATGATACTACGTATATAGTATTATGAATTTGGACATGGGACTAGTCCAGATTCGTAGTACTATATGTCCAGGGAGTAGATGGCACTATA CAGCCATGCCCTATCGTGAATTCGTGATAAGCTACATCATTTGCTACCC AAATGGCGACCCGATCGTACACC TTGATTACCC AAACC AATGAATGAATTGATAGATTACCC AAACC ATTGAATGAGTTGATAGAATAAGGCC CAGAC AACATTGTGATTTGTGAGCTTGTGTGTAGGGGATGTGGTTGCACCAGCGTGATGGATATGGTTGTAAGTTGCAGTAGTGTAAGCACGTTGGAAACTGCCTTATGGCCTTTGCCACGTTGACCAGGCGAATGGAAATGAAAATGGCTTTGAGGCAAAAAAAAAA] consensusID : consensus_6269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [ATCGTGCTGCAGGGGGAAACATACACTGCATCACCAGCACAGCCTGTACGCCCGTCGTAGATGATACTGCGTATATAGTATTATGAATTTGGACCTGGGACTAGTCCAGATTCGTAGTACTATATGTCCAGGGAGTAGATGGCACTATAGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACATCATTTGCTACCCCAAATGGCGACCCGATCATACACCCTTGATTACCCCAAACCCAATGAATGAATTGATAGATTACCCCAAACCCAATGAATGAGTTGATAGAATAAGGCCGCAGACCAACACTTGTGATTTGTGAGCTTGTGTGTAGGGGATGTGGTTGCACCACGCGTGATGGATATGGTTGTAAGTTGCACGTAGTGTAAGCACGTTGGAAACTGCCTTATGGCCTTTGCCACGTTGACCACGGCGAATGGAAATGAAAATGGCTTTGAGGCTGTTCTCGGTGAAAAAAAAAA] [+] EMBL BI805246 [ATCGTGCTGCAGGGGGAAACATACACTGCATCACCAGCACAGCCTGTACGCCCGTCGTAGATGATACTGCGTATATAGTATTATGAATTTGGACCTGGGACTAGTCCAGATTCGTAGTACTATATGTCCAGGGAGTAGATGGCACTATAGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACATCATTTGCTACCCCAAATGGCGACCCGATCATACACCCTTGATTACCCCAAACCCAATGAATGAATTGATAGATTACCCCAAACCCAATGAATGAGTTGATAGAATAAGGCCGCAGACCAACACTTGTGATTTGTGAGCTTGTGTGTAGGGGATGTGGTTGCACCACGCGTGATGGATATGGTTGTAAGTTGCACGTAGTGTAAGCACGTTGGAAACTGCCTTATGGCCTTTGCCACGTTGACCACGGCGAATGGAAATGAAAATGGCTTTGAGGCTGTTCTCGGTGAAAAAAAAAA] consensusID : consensus_6269#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence [AGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACATCATTTGCTACCCAAAATGGCGACCCGATCATACACCATTGATTACCCAAAACCAAATGAATGAATTGATAGATTACCCAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF315868 [AGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACATCATTTGCTACCCAAAATGGCGACCCGATCATACACCATTGATTACCCAAAACCAAATGAATGAATTGATAGATTACCCAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6269#0 GGCGGAATTGTAGCACCAGCTTTTGGCGACAAGTGGGACGAAGAAGCGTGTGCTGTTCTT 60 consensus_6269#1 ------------------------------------------------------------ consensus_6269#2 ------------------------------------------------------------ consensus_6269#0 CAGAAGGCATTTCCTGATCATGAGGTGGTGATGGTGGAAGGCGCAAGAGAGATCGTGCTG 120 consensus_6269#1 ---------------------------------------------------ATCGTGCTG 9 consensus_6269#2 ------------------------------------------------------------ consensus_6269#0 GCAGGGGGAAACATACACTGCATCACGCAGCAGCAGCCTGTACGCCCGTCGTAGATGATA 180 consensus_6269#1 -CAGGGGGAAACATACACTGCATCAC-CAGCA-CAGCCTGTACGCCCGTCGTAGATGATA 66 consensus_6269#2 ------------------------------------------------------------ consensus_6269#0 CTGCGTATATAGTATTATGAATTTGGACATGGGACTAGTCCAGATTCGTAGTACTATATG 240 consensus_6269#1 CTGCGTATATAGTATTATGAATTTGGACCTGGGACTAGTCCAGATTCGTAGTACTATATG 126 consensus_6269#2 ------------------------------------------------------------ consensus_6269#0 TCCAGGGAGTAGATGGCACTATAGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACA 300 consensus_6269#1 TCCAGGGAGTAGATGGCACTATAGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACA 186 consensus_6269#2 ----------------------AGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACA 38 ************************************** consensus_6269#0 TCATTTGCTACCCAAAATGGCGACCCGATCATACACCATTGATTACCCAAAACCAAATGA 360 consensus_6269#1 TCATTTGCTACCCCAAATGGCGACCCGATCATACACCCTTGATTACCCCAAACCCAATGA 246 consensus_6269#2 TCATTTGCTACCCAAAATGGCGACCCGATCATACACCATTGATTACCCAAAACCAAATGA 98 ************* *********************** ********** ***** ***** consensus_6269#0 ATGAATTGATAGATTACCCAAAACCAAATGAATGAGTTGATAGAATAAGGCCGCAGACAA 420 consensus_6269#1 ATGAATTGATAGATTACCCCAAACCCAATGAATGAGTTGATAGAATAAGGCCGCAGACCA 306 consensus_6269#2 ATGAATTGATAGATTACCCAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 158 ******************* ***** ** ** * * * ** ** * * * consensus_6269#0 ACA-TTGTGATTTGTGAGCTTGTGTGTAGGGGATGTGGTTGCACCA-GCGTGATGGATAT 478 consensus_6269#1 ACACTTGTGATTTGTGAGCTTGTGTGTAGGGGATGTGGTTGCACCACGCGTGATGGATAT 366 consensus_6269#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA- 217 * * * * * * * * * * * consensus_6269#0 GGTTGTAAGTTGCA-GTAGTGTAAGCACGTTGGAAACTGCCTTATGGCCTTTGCCACGTT 537 consensus_6269#1 GGTTGTAAGTTGCACGTAGTGTAAGCACGTTGGAAACTGCCTTATGGCCTTTGCCACGTT 426 consensus_6269#2 ------------------------------------------------------------ consensus_6269#0 GACCA-GGCGAATGGAAATGAAAATGGCTTTGAGGC-----------AAAAAAAAAA 582 consensus_6269#1 GACCACGGCGAATGGAAATGAAAATGGCTTTGAGGCTGTTCTCGGTGAAAAAAAAAA 483 consensus_6269#2 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||