These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 683 fasta sequence [ACAAACAAGCAGTTCTCTGTTTGCAAATTCTACTCCTGGTTTTGCTTCTTCTTCTCCGTTTGGCGCATCATTATCAAACCCCAGTTCATTCAGTACTGGCTTGTCCTTGGTTAACACTCAATCAGCTGGGCTATTTAGTTCTTCCCCGGCGTTTGCGCAACAGCCATTTACCCAGGCATCATCAGGGTTCGGATTGAGCACTCCAGCTTTCTCTACTGGAAGCCTATTCAGCACACCTACCCCTGGAATGACTGGTGGACTGTTTGGCAGCATGTCTTCACCCTTTTCATCAACGGCGTTTCAACAATCTGCCCCTACTCCAAGCATGTTCTCCTTCCAACCTCAAACTCAAACAGCTCCTACTGGT-GGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCCAACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCCTTCGGTACTCTGCCAGCAATGCCTCAGATGTCCATTGGGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCAT-GGTGGTTCCTAGGCATTTGTCGCAGAGAAGGATAAAAGTGCTGCCCAGAAAATATAATCCGATATCTGATGGCAAGGTCCCATTCT] [+] EMBL C26678 [ACAAACAAGCAGTTCTCTGTTTGCAAATTCTACTCCTGGTTTTGCTTCTTCTTCTCCGTTTGGCGCATCATTATCAAACCCCAGTTCATTCAGTACTGGCTTGTCCTTGGTTAACACTCAATCAGCTGGGCTATTTAGTTCTTCCCCGGCGTTTGCGCAACAGCCATTTACCCAGGCATCATCAGGGTTCGGATTGAGCACTCCAGCTTTCTCTACTGGAAGCCTATTCAGCACACCTACCCCTGGAATGACTGGTGGACTGTTTGGCAGCATGTCTTCACCCTTTTCATCAACGGCGTTTCAACAATCTGCCCCTACTCCAAGCATGTTCTCCTTCCAACCTCAAACTCAAACAGCTCCTACTGGTGGGATTTCTGGGCATTTCCAA ] [+] EMBL CF306703 [ TTGTCCTTGGTTAACACTCAATCAGCTGGGCTATTTAGTTCTTCCCCGGCGTTTGCGCAACAGCCATTTACCCAGGCATCATCAGGGTTCGGATTGAGCACTCCAGCTTTCTCTACTGGAAGCCTATTCAGCACACCTACCCCTGGAATGACTGGTGGACTGTTTGGCAGCATGTCTTCACCCTTTTCATCAACGGCGTTTCAACAATCTGCCCCTACTCCAAGCATGTTCTCCTTCCAACCTCAAACTCAAACAGCTCCTACTGGT GGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCCAACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCCTTCGGTACTCTGCCAGCAATGCCTCAGATGTCCATTGGGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCAT GGTGGTTCCTAGGCATTTGTCGCAGAGAAGGATAAAAGTGCTGCCCAGAAAATATAATCCGATATCTGATGGCAAGGTCCCATTCT] [+] EMBL CF323302 [ CCATTTACCCAGGCATCATCAGGGTTCGGATTGAGCACTCCAGCTTTCTCTACTGGAAGCCTATTCAGCACACCTACCCCTGGAATGACTGGTGGACTGTTTGGCAGCATGTCTTCACCCTTTTCATCAACGGCGTTTCAACAATCTGCCCCTACTCCAAGCATGTTCTCCTTCCAACCTCAAACTCAAACAGCTCCTACTGGT GGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCCAACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCCTTCGGTACTCTGCCAGCAATGCCTCAGATGTCCATTGGGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCATGGGTGGTTCCTAGGCATTTGTCGCAGAGAAGGATAAAAGTGCTGCCCAGAAAATATAATCCGATATCTGATGGCAAGGTCCCATTCT] consensusID : consensus_6270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [ACAATTTAGTTGCCTTTACAAATGAGTTCTGGGCAAGCCTATTATGTGGGACCCATTCTTATGACAGGCTAACATCCTCTAATTTGTAACTTCCTATTTCATATTGAATGCAGAACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCCTTCGGTACTCTGCCAGCAATGCCTCAGATGTCCATTGGGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAGTTAGTATTATTACTGTCTTAACTATTTTGATTGTTAAAGTAGAGTGCATGAGCACCTGAGCTTACTATAGAAGGATTGTTAGCAAGTTTGTCTGCTGATTGAGATACAAGAAAAGTGCATAGCAGATTGAGACATTCTACTCTTTTGCAGGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCATGGTGGTTCCTAGGCATTTGTCGCAAAGAAGGATAAAAGTGCTGCCCACAAAATATAATGCGATATCTGATGGCAAGGTCCCATTC] [+] EMBL CF304566 [ACAATTTAGTTGCCTTTACAAATGAGTTCTGGGCAAGCCTATTATGTGGGACCCATTCTTATGACAGGCTAACATCCTCTAATTTGTAACTTCCTATTTCATATTGAATGCAGAACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCCTTCGGTACTCTGCCAGCAATGCCTCAGATGTCCATTGGGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAGTTAGTATTATTACTGTCTTAACTATTTTGATTGTTAAAGTAGAGTGCATGAGCACCTGAGCTTACTATAGAAGGATTGTTAGCAAGTTTGTCTGCTGATTGAGATACAAGAAAAGTGCATAGCAGATTGAGACATTCTACTCTTTTGCAGGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCATGGTGGTTCCTAGGCATTTGTCGCAAAGAAGGATAAAAGTGCTGCCCACAAAATATAATGCGATATCTGATGGCAAGGTCCCATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6270#0 ACAAACAAGCAGTTCTCTGTTTGCAAATTCTACTCCTGGTTTTGCTTCTTCTTCTCCGTT 60 consensus_6270#1 ------------------------------------------------------------ consensus_6270#0 TGGCGCATCATTATCAAACCCCAGTTCATTCAGTACTGGCTTGTCCTTGGTTAACACTCA 120 consensus_6270#1 ------------------------------------------------------------ consensus_6270#0 ATCAGCTGGGCTATTTAGTT--CTTCCCCGGCGTTTGCGCAACA-GCCATTTACCCAGGC 177 consensus_6270#1 ---------ACAATTTAGTTGCCTTTACAAATGAGTTCTGGGCAAGCCTATTATGTGGGA 51 * ******** *** * * * * ** *** *** ** consensus_6270#0 ATCATCAGGGTTCGGATTGAGCACTCCAGCTTTCTCTACTGGAAGCCTATTCAGCACAC- 236 consensus_6270#1 CCCAT------TCTTAT--GACAGGCTAACATCCTCTAATTTGTAACTTCCTATTTCATA 103 *** ** ** ** * * * * ***** * ** * ** consensus_6270#0 CTACCCCTGGAATGACTGGTGGACTGTTTGGCAGCATGTCTTCACCCTTTTCATCAACGG 296 consensus_6270#1 TTGAATGCAGAACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAA-AT 162 * *** ** * * **** ** * ** *** consensus_6270#0 CGTTTCAACAATCTGCCCCTACTCCAAGCATGTTCTCCTTCCAACCTCAAACTCAAACAG 356 consensus_6270#1 CCCTTCGGTACTCTGCCAGCAATGCCT-CAGATGTCCATTGGGA----ATGGTGGATCAG 217 * *** * ****** * * * ** * * ** * * * * *** consensus_6270#0 CTCCTACTGGTGGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGC 416 consensus_6270#1 CCCCTTCTGTTCAATAT----GGAATCTCAAGTTTGCCAGTTAGTATTATTACTGTC--T 271 * *** *** * ** * * * * *** * * * ** ** * * consensus_6270#0 CAACT-CCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCCTTCGGT 475 consensus_6270#1 TAACTATTTTGATTGTTAAAGTAGAGTGCATGAGCACCTGAGCTTACTA------TAGAA 325 **** * * ** ** * * ** ** **** * * * consensus_6270#0 ACTCTGCCAGCAATGCCTCAGATGTCCATTGGGAATGGTGGATCAGCCCCTTCTGTTCAA 535 consensus_6270#1 GGATTGTTAGCAAG--TTTGTCTGCTGATTGAGATACAAGAAAAGTGCATAGCAGATTGA 383 ** ***** * ** **** ** * * * * * * * consensus_6270#0 TATGGAATCT-CAAGTTTGCCAGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATC 594 consensus_6270#1 GAC--ATTCTACTCTTTTGCAGGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATC 441 * * *** * ***** ************************************** consensus_6270#0 CATGGTGGTTCCTAGGCATTTGTCGCAGAGAAGGATAAAAGTGCTGCCCAGAAAATATAA 654 consensus_6270#1 CATGGTGGTTCCTAGGCATTTGTCGCAAAGAAGGATAAAAGTGCTGCCCACAAAATATAA 501 *************************** ********************** ********* consensus_6270#0 TCCGATATCTGATGGCAAGGTCCCATTCT 683 consensus_6270#1 TGCGATATCTGATGGCAAGGTCCCATTC- 529 * ************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||