These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6294#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [TGGCGGGCTCCAGAGCTCACAAAGGGAACAAAGCTTGAGCACCACACGCGGAGGGCGGCCGCAACGAGAACAAGGTGGGATCCCCCGGGGCGAGCAGGAGCCAACACCGCGGCACCACCACGCGGCTCGCGGCTCCCGCTGCCTTCGTCTGGATCGCCTCCGCCCGCTCCGTTTGACCCTTTCGTCCTCTTCGCGGATCCGGCGCCGCGGCCGGCGCTCACGCGGGAACAGGTGAAGTACTGCAAGGAGGCGCTCAAGGTGTTGAAGAAGAAGCTCAAGCAAACAGCTGCCATTGACATTTCCAAGGAATTCCATGCTCTCCCGGACATACAGACAGCATTCCAGACGGGAAAATGTACTGCTGCTCAAAATCCTGCTAATAGGGAAAAAAACCGCTACAGTGATGTCATGCCATTTGATGAAACCCGGGTACGTCTAAAGCCCTCAGCAAGTGATCACCCTTCAAGCAATGAATACATCATTGCAAGCCTTATAGAGACTGATGACCAAGGTCAAAGTCATACCAAGTTCATTTCCACTCAAGGTCCCTTGGTCCAGACATTTGGGGATTTCTGGCAGATGGTCTACCAAAACCAGTGTCCTGTGATTGTCATGGTCACTTAATTGATGGTGCCAAGTGTGACCGGTATCTTCCACCGACCGAAGGAAAGAACGGGATTATGAANAATGCACTTGTTACATCNCCAGTTCCAATCCAATGGTGTCTACAATTCCCTTGTTTGGATGTCANCCAANTGATTCCTT] [+] EMBL CA753555 [TGGCGGGCTCCAGAGCTCACAAAGGGAACAAAGCTTGAGCACCACACGCGGAGGGCGGCCGCAACGAGAACAAGGTGGGATCCCCCGGGGCGAGCAGGAGCCAACACCGCGGCACCACCACGCGGCTCGCGGCTCCCGCTGCCTTCGTCTGGATCGCCTCCGCCCGCTCCGTTTGACCCTTTCGTCCTCTTCGCGGATCCGGCGCCGCGGCCGGCGCTCACGCGGGAACAGGTGAAGTACTGCAAGGAGGCGCTCAAGGTGTTGAAGAAGAAGCTCAAGCAAACAGCTGCCATTGACATTTCCAAGGAATTCCATGCTCTCCCGGACATACAGACAGCATTCCAGACGGGAAAATGTACTGCTGCTCAAAATCCTGCTAATAGGGAAAAAAACCGCTACAGTGATGTCATGCCATTTGATGAAACCCGGGTACGTCTAAAGCCCTCAGCAAGTGATCACCCTTCAAGCAATGAATACATCATTGCAAGCCTTATAGAGACTGATGACCAAGGTCAAAGTCATACCAAGTTCATTTCCACTCAAGGTCCCTTGGTCCAGACATTTGGGGATTTCTGGCAGATGGTCTACCAAAACCAGTGTCCTGTGATTGTCATGGTCACTTAATTGATGGTGCCAAGTGTGACCGGTATCTTCCACCGACCGAAGGAAAGAACGGGATTATGAANAATGCACTTGTTACATCNCCAGTTCCAATCCAATGGTGTCTACAATTCCCTTGTTTGGATGTCANCCAANTGATTCCTT] consensusID : consensus_6294#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 527 fasta sequence [CACCTCGGCTCCACCACGCGGCTCGCGGCTCCCGCTGCCTTCGTCTGGATCGCCTCCGCCCGCTCCGTTTGACCCTTTCGTCCTCTTCGCGGATCCGGCGCCGCGGCCGGCGCTCACGCGGGAACAGGTGAAGTACTGCAAGGAGGCGCTCAAGGTGTTGAAGAAGAAGCTCAAGCAAACAGCTGCCATTGACATTTCCAAGGAATTCCATGCTCTCCCGGACATACAGACAGCATTCCAGACGGGAAAATTTACTGCTGCTCAAAATCCTGCTAATAGGGAAAAAAACCGCTACAGTGATGTCATGCCATTTGATGAAACCCGGGTACGTTTAAAGCCCTCAGCAAGTGATCACCCTTCAAGCAATGAATACATCAATGCAAGCCTTATAGAGACTGATGACCAAGGTCAAAGTCATACAAAGTTCATTTCCACTCAAGGTCCCTTGGTCAAGACATTTGGGGATTTCTGGCNNNNNGTNNANNNAAACCAGTNTCCNGTGANNGTTATGNTNNNNNNNNNNGATN] [+] EMBL CF197197 [CACCTCGGCTCCACCACGCGGCTCGCGGCTCCCGCTGCCTTCGTCTGGATCGCCTCCGCCCGCTCCGTTTGACCCTTTCGTCCTCTTCGCGGATCCGGCGCCGCGGCCGGCGCTCACGCGGGAACAGGTGAAGTACTGCAAGGAGGCGCTCAAGGTGTTGAAGAAGAAGCTCAAGCAAACAGCTGCCATTGACATTTCCAAGGAATTCCATGCTCTCCCGGACATACAGACAGCATTCCAGACGGGAAAATTTACTGCTGCTCAAAATCCTGCTAATAGGGAAAAAAACCGCTACAGTGATGTCATGCCATTTGATGAAACCCGGGTACGTTTAAAGCCCTCAGCAAGTGATCACCCTTCAAGCAATGAATACATCAATGCAAGCCTTATAGAGACTGATGACCAAGGTCAAAGTCATACAAAGTTCATTTCCACTCAAGGTCCCTTGGTCAAGACATTTGGGGATTTCTGGCNNNNNGTNNANNNAAACCAGTNTCCNGTGANNGTTATGNTNNNNNNNNNNGATN] [+] EMBL OSR21562A [ CCGCTCCGTTTGACCCTTTCGTCCTCTTCGCGGATCCGGCGCCGCGGCCGGCGCTCACGCGGGAACAGGTGAAGTACTGCAAGGAGGCGCTCAAGGTGTTGAAGAAGAAGCTCAAGCAAACAGCTGCCATTGACATTTCCAAGGAATTCCATGCTCTCCCGGACATACAGACAGCATTCCAGACGGGAAAATTTACTGCTGCTCAAAATCCTGCTAATAGGGAAAAAAACCGCTACAGTGATGTCATGCCATTTGATGAAACCCGGGTACGTTTAAAGCCCTCAGCAAGTGATCACCCTTCAAGCAATGAATACATCAATGCAAGCCT ] consensusID : consensus_6294#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 214 fasta sequence [GCAAAAAACCGTACAGTGATGTCATGCCATATTGATGAAACCCGTGTACGGTTAAAGCCCTCAGCAAGTGATCACCTTCAAGCAATGAATACATCATTGCAAGCTCATAGAGACTGTTGACCAAGGTCAAAGTCATACAAAGTTCATTTCCACTCAAGGTCCCTTCTTCAGGACATTTGGGGATTCCTGGCAGATGGTCTACGAAAACCAGTCT] [+] EMBL OS38130 [GCAAAAAACCGTACAGTGATGTCATGCCATATTGATGAAACCCGTGTACGGTTAAAGCCCTCAGCAAGTGATCACCTTCAAGCAATGAATACATCATTGCAAGCTCATAGAGACTGTTGACCAAGGTCAAAGTCATACAAAGTTCATTTCCACTCAAGGTCCCTTCTTCAGGACATTTGGGGATTCCTGGCAGATGGTCTACGAAAACCAGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6294#0 TGGCGGGCTCCAGAGCTCACAAAGGGAACAAAGCTTGAGCACCACACGCGGAGGGCGGCC 60 consensus_6294#2 ------------------------------------------------------------ consensus_6294#1 ------------------------------------------------------------ consensus_6294#0 GCAACGAGAACAAGGTGGGATCCCCCGGGGCGAGCAGGAGCCAACACCGCGGCACCACCA 120 consensus_6294#2 ------------------------------------------------------------ consensus_6294#1 --------------------------------------------CACCTCGGCTCCACCA 16 consensus_6294#0 CGCGGCTCGCGGCTCCCGCTGCCTTCGTCTGGATCGCCTCCGCCCGCTCCGTTTGACCCT 180 consensus_6294#2 ------------------------------------------------------------ consensus_6294#1 CGCGGCTCGCGGCTCCCGCTGCCTTCGTCTGGATCGCCTCCGCCCGCTCCGTTTGACCCT 76 consensus_6294#0 TTCGTCCTCTTCGCGGATCCGGCGCCGCGGCCGGCGCTCACGCGGGAACAGGTGAAGTAC 240 consensus_6294#2 ------------------------------------------------------------ consensus_6294#1 TTCGTCCTCTTCGCGGATCCGGCGCCGCGGCCGGCGCTCACGCGGGAACAGGTGAAGTAC 136 consensus_6294#0 TGCAAGGAGGCGCTCAAGGTGTTGAAGAAGAAGCTCAAGCAAACAGCTGCCATTGACATT 300 consensus_6294#2 ------------------------------------------------------------ consensus_6294#1 TGCAAGGAGGCGCTCAAGGTGTTGAAGAAGAAGCTCAAGCAAACAGCTGCCATTGACATT 196 consensus_6294#0 TCCAAGGAATTCCATGCTCTCCCGGACATACAGACAGCATTCCAGACGGGAAAATGTACT 360 consensus_6294#2 ------------------------------------------------------------ consensus_6294#1 TCCAAGGAATTCCATGCTCTCCCGGACATACAGACAGCATTCCAGACGGGAAAATTTACT 256 consensus_6294#0 GCTGCTCAAAATCCTGCTAATAGGGAAAAAAACCGCTACAGTGATGTCATGCCAT-TTGA 419 consensus_6294#2 ------------------------GCAAAAAACCG-TACAGTGATGTCATGCCATATTGA 35 consensus_6294#1 GCTGCTCAAAATCCTGCTAATAGGGAAAAAAACCGCTACAGTGATGTCATGCCAT-TTGA 315 * ********* ******************* **** consensus_6294#0 TGAAACCCGGGTACGTCTAAAGCCCTCAGCAAGTGATCACCCTTCAAGCAATGAATACAT 479 consensus_6294#2 TGAAACCCGTGTACGGTTAAAGCCCTCAGCAAGTGATCACC-TTCAAGCAATGAATACAT 94 consensus_6294#1 TGAAACCCGGGTACGTTTAAAGCCCTCAGCAAGTGATCACCCTTCAAGCAATGAATACAT 375 ********* ***** ************************ ****************** consensus_6294#0 CATTGCAAGCCTTATAGAGACTGATGACCAAGGTCAAAGTCATACCAAGTTCATTTCCAC 539 consensus_6294#2 CATTGCAAGC-TCATAGAGACTGTTGACCAAGGTCAAAGTCATACAAAGTTCATTTCCAC 153 consensus_6294#1 CAATGCAAGCCTTATAGAGACTGATGACCAAGGTCAAAGTCATACAAAGTTCATTTCCAC 435 ** ******* * ********** ********************* ************** consensus_6294#0 TCAAGGTCCCTTGGTCCAGACATTTGGGGATTTCTGGCAGATGGTCTACCAAAACCAGTG 599 consensus_6294#2 TCAAGGTCCCTTCTTCAGGACATTTGGGGATTCCTGGCAGATGGTCTACGAAAACCAGTC 213 consensus_6294#1 TCAAGGTCCCTTGGTCAAGACATTTGGGGATTTCTGGCNNNNNGTNNANNNAAACCAGTN 495 ************ ** ************** ***** ** * ******** consensus_6294#0 TCCTGTGATTGTCATGGTCACTTAATTGATGGTGCCAAGTGTGACCGGTATCTTCCACCG 659 consensus_6294#2 T----------------------------------------------------------- 214 consensus_6294#1 TCCNGTGANNGTTATGNTNNNNNNNNNNGATN---------------------------- 527 * consensus_6294#0 ACCGAAGGAAAGAACGGGATTATGAANAATGCACTTGTTACATCNCCAGTTCCAATCCAA 719 consensus_6294#2 ------------------------------------------------------------ consensus_6294#1 ------------------------------------------------------------ consensus_6294#0 TGGTGTCTACAATTCCCTTGTTTGGATGTCANCCAANTGATTCCTT 765 consensus_6294#2 ---------------------------------------------- consensus_6294#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||