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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6300#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 818 fasta sequence
[GAAGCCGTGTAGTCGTACCTCGTACGTGCGGCCGGGGTTTAATTAATAAATTAGCAACACCTAGCTAGCTACTGGCCAGCCATGGCACAAGGAGTGATGCTGTGGTATGATGATTTCCTAGCAGTATTAGTACTTTCTGTGCTGGTGGCTACGTCGTCGACGGCGGCGAACTGCGGCAGGAAGTGTGGCGACGTGCGCATCCCCTACCCGTTCGGCATCGGCGTCGACTGCGCCTGGCCGGGCTTCGATGTCACATGCAACCATAGCTTTACCCCTCCCAGACCCTACTACGGCAACATAGAGATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCCGTGGTCTCCCAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACCGTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGGCATCGGCTGCGACACCATGGCGTTGCTGCANGGCAGGGACGACTGGAGCTTCCTCACCGGCTGCATCACGACGTGCGTGAGCTTAAACCAGGCCTGCCCGACGGCAAGCAGTGCTCCGGGCTGGGTGCTGCCCGGTTGCTTCCATCCCACCACCCTTACACCGTACCCCCTCACTGGACAACCTCCTGAAACCCGCCTGGACCTCAGCCATCACCTCCCTTTGTGCTGAAAAGATGTTCAATTCCCGGCAATTTCCGCCCCGTACGACCTTATAATGTTGGATTATGTTTCACTCGACTGCCATCTGACACTTTGNTATTTGTTTCCTGTTTCCCACCTGTTTCCGGA]
[+] EMBL CA753334 [GAAGCCGTGTAGTCGTACCTCGTACGTGCGGCCGGGGTTTAATTAATAAATTAGCAACACCTAGCTAGCTACTGGCCAGCCATGGCACAAGGAGTGATGCTGTGGTATGATGATTTCCTAGCAGTATTAGTACTTTCTGTGCTGGTGGCTACGTCGTCGACGGCGGCGAACTGCGGCAGGAAGTGTGGCGACGTGCGCATCCCCTACCCGTTCGGCATCGGCGTCGACTGCGCCTGGCCGGGCTTCGATGTCACATGCAACCATAGCTTTACCCCTCCCAGACCCTACTACGGCAACATAGAGATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCCGTGGTCTCCCAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACCGTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGGCATCGGCTGCGACACCATGGCGTTGCTGCANGGCAGGGACGACTGGAGCTTCCTCACCGGCTGCATCACGACGTGCGTGAGCTTAAACCAGGCCTGCCCGACGGCAAGCAGTGCTCCGGGCTGGGTGCTGCCCGGTTGCTTCCATCCCACCACCCTTACACCGTACCCCCTCACTGGACAACCTCCTGAAACCCGCCTGGACCTCAGCCATCACCTCCCTTTGTGCTGAAAAGATGTTCAATTCCCGGCAATTTCCGCCCCGTACGACCTTATAATGTTGGATTATGTTTCACTCGACTGCCATCTGACACTTTGNTATTTGTTTCCTGTTTCCCACCTGTTTCCGGA]
consensusID : consensus_6300#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 758 fasta sequence
[GATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCCGTGGTCTCCCAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACCGTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGCCATCGGCTGCGACACCATGGCGTTGCTGCAGGGCAGGGACGACTGGAGCTTCCTCACCGGCTGCATCACGACGTGCGTGAGCTTAGACGAGGCTGCCCACGACGGCGAGCAGTGCTCCGGGCTGGGTTGCTGCCAGGTGCCTTCCATCCCACCCAACCTTACCACCGTAGCGCTCGACTGGAGCAACCGTACTGAAAACCTGGCCTGGACATACAGCCCATGCAGCTACGCCTTCGTGGCTGAGAAAGGATGGTACAAATTCAGCCGGCGAGATTTTAGCCGTGCCGGTAGCAAGAGCTTTATGAATCGTGCTGGAGATAGAAGTGTCGTTACAGTGCTTGATTGGGCTATCAGCAGCAACGGATCGTGCTCGTCAACATCGCGGGTTGCTCCTGCCTGTGTCAGCCCCAACAGCTACTGCGTCAACACCACCAATGGACAGGGATATCTTTGCAAGTGCTCCACGGGATATGATGGCAATCCCTACGTCACCGGTGACAGTGGGTGTACAAATATTAATGAATGCAAGCTTAGAAGAGAAGACCCTGCCAAGTACAGAGAACTTTATCCATGTTACGGTGGTAGCAAAT]
[+] EMBL CB619116 [GATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCCGTGGTCTCCCAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACCGTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGCCATCGGCTGCGACACCATGGCGTTGCTGCAGGGCAGGGACGACTGGAGCTTCCTCACCGGCTGCATCACGACGTGCGTGAGCTTAGACGAGGCTGCCCACGACGGCGAGCAGTGCTCCGGGCTGGGTTGCTGCCAGGTGCCTTCCATCCCACCCAACCTTACCACCGTAGCGCTCGACTGGAGCAACCGTACTGAAAACCTGGCCTGGACATACAGCCCATGCAGCTACGCCTTCGTGGCTGAGAAAGGATGGTACAAATTCAGCCGGCGAGATTTTAGCCGTGCCGGTAGCAAGAGCTTTATGAATCGTGCTGGAGATAGAAGTGTCGTTACAGTGCTTGATTGGGCTATCAGCAGCAACGGATCGTGCTCGTCAACATCGCGGGTTGCTCCTGCCTGTGTCAGCCCCAACAGCTACTGCGTCAACACCACCAATGGACAGGGATATCTTTGCAAGTGCTCCACGGGATATGATGGCAATCCCTACGTCACCGGTGACAGTGGGTGTACAAATATTAATGAATGCAAGCTTAGAAGAGAAGACCCTGCCAAGTACAGAGAACTTTATCCATGTTACGGTGGTAGCAAAT]
[+] EMBL CB619379 [GATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCCGTGGTCTCCCAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACCGTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGCCATCGGCTGCGACACCATGGCGTTGCTGCAGGGCAGGGACGACTGGAGCTTCCTCACCGGCTGCATCACGACGTGCGTGAGCTTAGACGAGGCTGCCCACGACGGCGAGCAGTGCTCCGGGCTGGGTTGCTGCCAGGTGCCTTCCATCCCACCCAACCTTACCACCGTAGCGCTCGACTGGAGCAACCGTACTGAAAACCTGGCCTGGACATACAGCCCATGCAGCTACGCCTTCGTGGCTGAGAAAGGATGGTACAAATTCAGCCGGCGAGATTTTAGCCGTGCCGGTAGCAAGAGCTTTATGAATCGTGCTGGAGATAGAAGTGTCGTTACAGTGCTTGATTGGGCTATCAGCAGCAACGGATCGTGCTCGTCAACATCGCGGGTTGCTCCTGCCTGTGTCAGCCCCAACAGCTACTGCGTCAACACCACCAATGGACAGGGATATCTTTGCAAGTGCTCCACGGGATATGATGGCAATCCCTACGTCACCGGTGACAGTGGGTGTACAAATATTAATGAATGCAAGCTTAGAAGAGAAGACCC ]
consensusID : consensus_6300#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[TGTGGTATGATGATTTCCTAGCAGTATTAGTACTTTCTGTGCTGGGGGCCATGTCGTGGACGGCGGCGAACTGCGCCAGGAAGTGTGGCGACGTGCGCATCCCCTACCCGTTCGGCATCGGCGTCGACTGCGCCTGGCCGGGCTTCGATGTCACATGCAACCATAGCTTTACCCCTCCCAGACCCTACTACGGCAACATAGAGATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCGTGGTCTCCCAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACCGTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGCCATCGGCTGCGACACCATGGCGTTGCTGCAGGGCAGGGACGACTGGAGCTTCCTCACCGGATGCATCACGACGTGCGTGAGCTTAGACGAGGCTGCCCACGACGGCGAGCAGTGCTCCGGGCTGGGTTGCTGCCAGGTGCCTTCCATCCCACCCAACCTTACCACCGTAGCGCTCGACTGGAGCAACCGTACTGAAAACCTGGCCTGGACATACAGCCCATGCAGCTACGCCTTCGTGGCTGAGAAAGGATGGTAAGCTAATTAAATAAAGAAAATCTATCTATTATACCTAAAAAAAAAAAA]
[-] EMBL CA759396 [TGTGGTATGATGATTTCCTAGCAGTATTAGTACTTTCTGTGCTGGGGGCCATGTCGTGGACGGCGGCGAACTGCGCCAGGAAGTGTGGCGACGTGCGCATCCCCTACCCGTTCGGCATCGGCGTCGACTGCGCCTGGCCGGGCTTCGATGTCACATGCAACCATAGCTTTACCCCTCCCAGACCCTACTACGGCAACATAGAGATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCGTGGTCTCCCAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACCGTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGCCATCGGCTGCGACACCATGGCGTTGCTGCAGGGCAGGGACGACTGGAGCTTCCTCACCGGATGCATCACGACGTGCGTGAGCTTAGACGAGGCTGCCCACGACGGCGAGCAGTGCTCCGGGCTGGGTTGCTGCCAGGTGCCTTCCATCCCACCCAACCTTACCACCGTAGCGCTCGACTGGAGCAACCGTACTGAAAACCTGGCCTGGACATACAGCCCATGCAGCTACGCCTTCGTGGCTGAGAAAGGATGGTAAGCTAATTAAATAAAGAAAATCTATCTATTATACCTAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6300#0 GAAGCCGTGTAGTCGTACCTCGTACGTGCGGCCGGGGTTTAATTAATAAATTAGCAACAC 60
consensus_6300#2 ------------------------------------------------------------
consensus_6300#1 ------------------------------------------------------------
consensus_6300#0 CTAGCTAGCTACTGGCCAGCCATGGCACAAGGAGTGATGCTGTGGTATGATGATTTCCTA 120
consensus_6300#2 ----------------------------------------TGTGGTATGATGATTTCCTA 20
consensus_6300#1 ------------------------------------------------------------
consensus_6300#0 GCAGTATTAGTACTTTCTGTGCTGGTGGCTACGTCGTCGACGGCGGCGAACTGCGGCAGG 180
consensus_6300#2 GCAGTATTAGTACTTTCTGTGCTGGGGGCCATGTCGTGGACGGCGGCGAACTGCGCCAGG 80
consensus_6300#1 ------------------------------------------------------------
consensus_6300#0 AAGTGTGGCGACGTGCGCATCCCCTACCCGTTCGGCATCGGCGTCGACTGCGCCTGGCCG 240
consensus_6300#2 AAGTGTGGCGACGTGCGCATCCCCTACCCGTTCGGCATCGGCGTCGACTGCGCCTGGCCG 140
consensus_6300#1 ------------------------------------------------------------
consensus_6300#0 GGCTTCGATGTCACATGCAACCATAGCTTTACCCCTCCCAGACCCTACTACGGCAACATA 300
consensus_6300#2 GGCTTCGATGTCACATGCAACCATAGCTTTACCCCTCCCAGACCCTACTACGGCAACATA 200
consensus_6300#1 ------------------------------------------------------------
consensus_6300#0 GAGATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCCGTGGTCTCC 360
consensus_6300#2 GAGATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCC-GTGGTCTCC 259
consensus_6300#1 --GATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCCGTGGTCTCC 58
************************************************ *********
consensus_6300#0 CAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACC 420
consensus_6300#2 CAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACC 319
consensus_6300#1 CAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACC 118
************************************************************
consensus_6300#0 GTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGGCATCGGCTGC 480
consensus_6300#2 GTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGCCATCGGCTGC 379
consensus_6300#1 GTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGCCATCGGCTGC 178
************************************************* **********
consensus_6300#0 GACACCATGGCGTTGCTGCANGGCAGGGACGACTGGAGCTTCCTCACCGGCTGCATCACG 540
consensus_6300#2 GACACCATGGCGTTGCTGCAGGGCAGGGACGACTGGAGCTTCCTCACCGGATGCATCACG 439
consensus_6300#1 GACACCATGGCGTTGCTGCAGGGCAGGGACGACTGGAGCTTCCTCACCGGCTGCATCACG 238
******************** ***************************** *********
consensus_6300#0 ACGTGCGTGAGCTTAAACCAGGCCTGCC-CGACGGCAAGCAGTGCTCCGGGCTGGGT-GC 598
consensus_6300#2 ACGTGCGTGAGCTTAGACGAGGCTGCCCACGACGGCGAGCAGTGCTCCGGGCTGGGTTGC 499
consensus_6300#1 ACGTGCGTGAGCTTAGACGAGGCTGCCCACGACGGCGAGCAGTGCTCCGGGCTGGGTTGC 298
*************** ** **** ** ******* ******************** **
consensus_6300#0 TGCCCGGTTGCTTCCATCCCACC--ACCCTTACACCGTACCCCCTCACTGGA-CAACC-T 654
consensus_6300#2 TGCCAGGTGCCTTCCATCCCACCCAACCTTACCACCGTAGCGCTCGACTGGAGCAACCGT 559
consensus_6300#1 TGCCAGGTGCCTTCCATCCCACCCAACCTTACCACCGTAGCGCTCGACTGGAGCAACCGT 358
**** *** ************* *** * ******* * * ****** ***** *
consensus_6300#0 CCTGAAACCC--GCCTGGACCT-CAGCCATCACCTC----CCTTTGTG-CTGAAAAGATG 706
consensus_6300#2 ACTGAAAACCTGGCCTGGACATACAGCCCATGCAGCTACGCCTTCGTGGCTGAGAAAGGA 619
consensus_6300#1 ACTGAAAACCTGGCCTGGACATACAGCCCATGCAGCTACGCCTTCGTGGCTGAGAAAGGA 418
****** ** ******** * ***** * * **** *** **** **
consensus_6300#0 T--TCAATTCCCGGCAATTTCCGCCCCGTACGACCTTATAATGTTGGATT-ATGTTTCAC 763
consensus_6300#2 T--GGTAAGCTAATTAAATAAAG---AAAATCTATCTATTATACCTAAAA-AAAAAAAA- 672
consensus_6300#1 TGGTACAAATTCAGCCGGCGAGATTTTAGCCGTGCCGGTAGCAAGAGCTTTATGAATCGT 478
* * * *
consensus_6300#0 TCGACTGCCATCTGACACTTTGNTATTTGTTTCCTGTTTCCCACCTGTTTCCGGA----- 818
consensus_6300#2 ------------------------------------------------------------
consensus_6300#1 GCTGGAGATAGAAGTGTCGTTACAGTGCTTGATTGGGCTATCAGCAGCAACGGATCGTGC 538
consensus_6300#0 ------------------------------------------------------------
consensus_6300#2 ------------------------------------------------------------
consensus_6300#1 TCGTCAACATCGCGGGTTGCTCCTGCCTGTGTCAGCCCCAACAGCTACTGCGTCAACACC 598
consensus_6300#0 ------------------------------------------------------------
consensus_6300#2 ------------------------------------------------------------
consensus_6300#1 ACCAATGGACAGGGATATCTTTGCAAGTGCTCCACGGGATATGATGGCAATCCCTACGTC 658
consensus_6300#0 ------------------------------------------------------------
consensus_6300#2 ------------------------------------------------------------
consensus_6300#1 ACCGGTGACAGTGGGTGTACAAATATTAATGAATGCAAGCTTAGAAGAGAAGACCCTGCC 718
consensus_6300#0 ----------------------------------------
consensus_6300#2 ----------------------------------------
consensus_6300#1 AAGTACAGAGAACTTTATCCATGTTACGGTGGTAGCAAAT 758
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||