|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1703 fasta sequence
[TCGTGGAATTGGATTGGCACAGCAAAGTAACCCTCCAAAGAAAGCTTCACTAAAACCTTTGCATTGGGTAAAAGTTACACGAGCAATGCAAGGCAGTCTCTGGGAGGATGCGCAAAAACAAGGAAATCAGGCTAGGGCTCCTGATATTGATTTATCAGAATTGGAGAGCTTGTTCTCCACTGCGGTTGCAACCAATGCAAGTGAAAAAGGAGGAACAAAGCGCGGTTCAGCTATTAGCAAGCCAGAAATCGTTCATCTGGTTGATATGAGAAGAGCAAACAATTGCGAGATCATGCTTACTAAAATTAAAATGCCTCTTCCTGATATGATTAATGCAATATTGGCTTTGGATACGTCTGTTCTTGATAATGACCAAGTGGAAAATCTCATTAAGTTTTGCCCTACAAAGGAGGAAATTGAGATGTTGAAGAACTACAATGGCAATAAAGAAATGCTTGGGAAATGCGAACAGTTTTTTCTGGAGCTAATGAAAGTACCTCGCGTGGAGTCCAAACTGAGAGTGTTTGCTTTTAGGATTACATTTTCAACACAGGTAGAAGAGCTGAGAACTAACCTAACCACCATAAATGATGCAACAAAAGAGGTGAAAGAGTCTCTGAAGTTAAGGCAGATAATGCAGACCATTCTTACATTAGGGAATGCATTGAACCAAGGAACAGCTCGAGGATCTGCGGTTGGCTTCAGATTAGACAGTCTTCTTAAATTATCAGATACTCGAGCTAGAAACAACAAGATGACACTAATGCATTAT-TTATGCAAGCTTCTTTCTGAGAAATTGCCTGAGCTTCTTGATTTTGACAAAGATTTAATTCATTTGGAAGCTGCTTCTAAGATCCAGCTAAAGTTGCTTGCGGAAGAAATGCAAGCAATAAACAAAGGTCTAGAGAAGGTTGAGCAAGAATTAGCTGCTTCAGTGAATGACGGTGCAATTTCTGTTGGTTTCCGTGAGGCATTGAAAAGCTTTCTTGATGCAGCAGAGGCTGAGGTTAGGTCCCTAATTTCCTTGTACTCGGAAGTGGGAAGAAACGCTGATTCACTAGCTCAGTATTTTGGCGAGGATCCAGCACGGTGCCCTTTTGAGCAAGTGACATCAATTCTGGTTATATTTGTGAATATGTTCAAAAAATCACGTGATGAAAATGCTCGAACTGCGGAACTTGAGAAAAAGAAATTAGAAAAGGACAAGGAAAAGGCAACTTTGTCTGCAAAGAAAGTCTTGGAATGATACTACTGCTACACTGAAGTTCCATCTTTGCGAAGTAGAGCCATGATCCAGCACCAGCCAT-GGCGGAGATGCCAAATTGTGTATTGTAAACGAGAACCTGCTTCTGCTTTTAGTGGACATGCAGGGCTGTAATGCCTGGAAGCTGCCTTGTTGGATGGGTGCGATCCACGAAATGGGTGTCATTTGGATTGCAACCTTGGAAAGTTCTGTGATTACCAATAGGCGGCATTGGCGATATGGCTGAGCGAAGTGCAGCGAGAAGTGCTGCTGCTGACAGTTTTGGTGTAAATACAGTAGTTACTAGGATATAGTTGTATTACCTGTACATAGAATATGCAGCCCAAGTGGGAGGAAAGCAATTAAGCAAACAACAGTAGTGTTGTATAATCAAGAACAATCATGTTTCCCTTC-GTCACAGGTGTTAATTCGTGGCTCGCCAATTTCTGTATTAAAAAGA]
[+] EMBL AK063350 [TCGTGGAATTGGATTGGCACAGCAAAGTAACCCTCCAAAGAAAGCTTCACTAAAACCTTTGCATTGGGTAAAAGTTACACGAGCAATGCAAGGCAGTCTCTGGGAGGATGCGCAAAAACAAGGAAATCAGGCTAGGGCTCCTGATATTGATTTATCAGAATTGGAGAGCTTGTTCTCCACTGCGGTTGCAACCAATGCAAGTGAAAAAGGAGGAACAAAGCGCGGTTCAGCTATTAGCAAGCCAGAAATCGTTCATCTGGTTGATATGAGAAGAGCAAACAATTGCGAGATCATGCTTACTAAAATTAAAATGCCTCTTCCTGATATGATTAATGCAATATTGGCTTTGGATACGTCTGTTCTTGATAATGACCAAGTGGAAAATCTCATTAAGTTTTGCCCTACAAAGGAGGAAATTGAGATGTTGAAGAACTACAATGGCAATAAAGAAATGCTTGGGAAATGCGAACAGTTTTTTCTGGAGCTAATGAAAGTACCTCGCGTGGAGTCCAAACTGAGAGTGTTTGCTTTTAGGATTACATTTTCAACACAGGTAGAAGAGCTGAGAACTAACCTAACCACCATAAATGATGCAACAAAAGAGGTGAAAGAGTCTCTGAAGTTAAGGCAGATAATGCAGACCATTCTTACATTAGGGAATGCATTGAACCAAGGAACAGCTCGAGGATCTGCGGTTGGCTTCAGATTAGACAGTCTTCTTAAATTATCAGATACTCGAGCTAGAAACAACAAGATGACACTAATGCATTAT TTATGCAAGCTTCTTTCTGAGAAATTGCCTGAGCTTCTTGATTTTGACAAAGATTTAATTCATTTGGAAGCTGCTTCTAAGATCCAGCTAAAGTTGCTTGCGGAAGAAATGCAAGCAATAAACAAAGGTCTAGAGAAGGTTGAGCAAGAATTAGCTGCTTCAGTGAATGACGGTGCAATTTCTGTTGGTTTCCGTGAGGCATTGAAAAGCTTTCTTGATGCAGCAGAGGCTGAGGTTAGGTCCCTAATTTCCTTGTACTCGGAAGTGGGAAGAAACGCTGATTCACTAGCTCAGTATTTTGGCGAGGATCCAGCACGATGCCCTTTTGAGCAAGTGACATCAATTCTGGTTATATTTGTGAATATGTTCAAAAAATCACGTGATGAAAATGCTCGAACTGCGGAACTTGAGAAAAAGAAATTAGAAAAGGACAAGGAAAAGGCAACTTTGTCTGCAAAGAAAGTCTTGGAATGATACTACTGCTACACTGAAGTTCCATCTTTGCGAAGTAGAGCCATGATCCAGCACCAGCCAT GGCGGAGATGCCAAATTGTGTATTGTAAACGAGAACCTGCTTCTGCTTTTAGTGGACATGCAGGGCTGTAATGCCTGGAAGCTGCCTTGTTGGATGGGTGCGATCCACGAAATGGGTGTCATTTGGATTGCAACCTTGGAAAGTTCTGTGATTACCAATAGGCGGCATTGGCGATATGGCTGAGCGAAGTGCAGCGAGAAGTGCTGCTGCTGACAGTTTTGGTGTAAATACAGTAGTTACTAGGATATAGTTGTATTACCTGTACATAGAATATGCAGCCCAAGTGGGAGGAAAGCAATTAAGCAAACAACAGTAGTGTTGTATAATCAAGAACAATCATGTTTCCCTTC GTCACAGGTGTTAATTCGTGGCTCGC ]
[+] EMBL CA766348 [ TAATGCAGACCCTTCTTACATTAGGGAATGCATTGAACCAAGGAACAGCTCGAGGATCTGCGGTTGGCTTCAGATTGGACAGTCTTCTTAAATTATCAGATACTCGAGCTAGAAACAACAAGATGACACTAATGCATTATCTTATGCAAGCTTCTTTCTGAGAAATTGCCTGAGCTTCTTGATTTTGACAAAGATTTAATTCATTTGGAAGCTGCTTCTAAGATCCAGCTAAAGCTGCTTGCGGAAGAAATGCAAGCAATAAACAAAGGTCTAGAGAAGGTTGAGCAAGAATTAGCTGCTTCAGTGAATGACGGTGCAATTTCTGTTGGTTTCCGTGAGGCATTGAAAAGCTTTCTTGATGCAGCAGAGGCTGAGGTTAGGTCCCTAATTTCCTTGTACTCGGAAGTGGGAAGAAACGCTGATTCACTAGCTCAGTATTTTGGCGAGGATCCAGCACGGTGCCCTTTTGAGCAAGTGACATCAATTCTGGTTATATTTGTGAATATGTTCAAAAAATCACGTGATGAAAATGCTCGAACTGCGGAACTTGAGAAAAAGAAATTAGAAAAGGACAAGGAAAAGGCAACTTTGTCTGCAAAGAAAGTCTTGGAATGATACTACTGCTACACTGAAGTTCCATCTCTGCGAAGTAGAGCCATGATCCAGCACCAGCCATGGGCGGAGATGCCAA ]
[-] EMBL CB625662 [ CAATAAACAAAGGTCTAGAGAAGGTTGAGCAAGAATTAGCTGCTTCAGTGAATGACGGTGCAATTTCTGTTGGTTTCCGTGAGGCATTGAAAAGCTTTCTTGATGCAGCAGAGGCTGAGGTTAGGTCCCTAATTTCCTTGTACTCGGAAGTGGGAAGAAACGCTGATTCACTAGCTCAGTATTTTGGCGAGGATCCAGCACGGTGCCCTTTTGAGCAAGTGACATCAATTCTGGTTATATTTGTGAATATGTTCAAAAAATCACGTGATGAAAATGCTCGAACTGCGGAACTTGAGAAAAAGAAATTAGAAAAGGACAAGGAAAAGGCAACTTTGTCTGCAAAGAAAGTCTTGGAATGATACTACTGCTACACTGAAGTTCCATCTTTGCGAAGTAGAGCCATGATCCAGCACCAGCCAT GGCGGAGATGCCAAATTGTGTATTGTAAACGAGAACCTGCTTCTGCTTTTAGTGGACATGCAGGGCTGTAATGCCTGGAAGCTGCCTTGTTGGATGGGTGCGATCCACGAAATGGGTGTCATTTGGATTGCAACCTTGGAAAGTTCTGTGATTACCAATAGGCGGCATTGGCGATATGGCTGAGCGAAGTGCAGCGAGAAGTGCTGCTGCTGACAGTTTTGGTGTAAATACAGTAGTTACTAGGATATAGTTGTATTACCTGTACATAGAATATGCAGCCCAAGTGGGAGGAAAGCAATTAAGCAAACAACAGTAGTGTTGTATAATCAAGAACAATCATGTTTCCCTTCAAAGGCAGGTGTTAATTCGTGGCTCGCCAATTTCTGTATTAAAAAGA]
consensusID : consensus_6311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence
[ATTAGAAAAGGCCAAGGAAAAGGCAACTTTTTTTGCAAAGAAAGTCTTGGAATGATAATACTGTTACACTGAAGTTCCATCTTTGCGAAGTAGAGCCATGATCCAGCACCAGCCATGGCGGAGATGCCAAATTGTGTATTGTAAACGAGAACCTGCTTTTGCTTTTAGTGGACATGCAGGGCTGTAATGCCTGGAAGCTGCCTTGTTGGAGGGGTGCGATCCCCGAAAGGGGTGTCATTTGGATTGCAACCTTGGAAAGTTTTGTGATTACCAATAGGCGGCATTGGCGATATGGTTGAGCGAAGTGCAGCGAAAAATGCTGCTGCTGACAGTTTTGGTGTAAATACAGTAGTTACTAGGATATAGTTGTATTCCCTGTACATAGAATATGCAGCCCAAGTGGGAGGAAAGCAATTAAGCAAACACCAGTAGGGTTGTATAATCAAGAACAATCATGTTTCCCTTCGTCACAGGGGTTAATTCGTGGCTCGCCAATTTTTTTTGTGCTTTGCATTTTGCTCCTTTTTAATGCTTTGGTTACTCAAGTAAACAGCCATGATAACACCAGAATGGGCGTATTGAACTTGGGTGGACAAGCAATCTAAAA]
[-] EMBL CB655011 [ATTAGAAAAGGCCAAGGAAAAGGCAACTTTTTTTGCAAAGAAAGTCTTGGAATGATAATACTGTTACACTGAAGTTCCATCTTTGCGAAGTAGAGCCATGATCCAGCACCAGCCATGGCGGAGATGCCAAATTGTGTATTGTAAACGAGAACCTGCTTTTGCTTTTAGTGGACATGCAGGGCTGTAATGCCTGGAAGCTGCCTTGTTGGAGGGGTGCGATCCCCGAAAGGGGTGTCATTTGGATTGCAACCTTGGAAAGTTTTGTGATTACCAATAGGCGGCATTGGCGATATGGTTGAGCGAAGTGCAGCGAAAAATGCTGCTGCTGACAGTTTTGGTGTAAATACAGTAGTTACTAGGATATAGTTGTATTCCCTGTACATAGAATATGCAGCCCAAGTGGGAGGAAAGCAATTAAGCAAACACCAGTAGGGTTGTATAATCAAGAACAATCATGTTTCCCTTCGTCACAGGGGTTAATTCGTGGCTCGCCAATTTTTTTTGTGCTTTGCATTTTGCTCCTTTTTAATGCTTTGGTTACTCAAGTAAACAGCCATGATAACACCAGAATGGGCGTATTGAACTTGGGTGGACAAGCAATCTAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6311#0 TCGTGGAATTGGATTGGCACAGCAAAGTAACCCTCCAAAGAAAGCTTCACTAAAACCTTT 60
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 GCATTGGGTAAAAGTTACACGAGCAATGCAAGGCAGTCTCTGGGAGGATGCGCAAAAACA 120
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 AGGAAATCAGGCTAGGGCTCCTGATATTGATTTATCAGAATTGGAGAGCTTGTTCTCCAC 180
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 TGCGGTTGCAACCAATGCAAGTGAAAAAGGAGGAACAAAGCGCGGTTCAGCTATTAGCAA 240
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 GCCAGAAATCGTTCATCTGGTTGATATGAGAAGAGCAAACAATTGCGAGATCATGCTTAC 300
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 TAAAATTAAAATGCCTCTTCCTGATATGATTAATGCAATATTGGCTTTGGATACGTCTGT 360
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 TCTTGATAATGACCAAGTGGAAAATCTCATTAAGTTTTGCCCTACAAAGGAGGAAATTGA 420
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 GATGTTGAAGAACTACAATGGCAATAAAGAAATGCTTGGGAAATGCGAACAGTTTTTTCT 480
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 GGAGCTAATGAAAGTACCTCGCGTGGAGTCCAAACTGAGAGTGTTTGCTTTTAGGATTAC 540
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 ATTTTCAACACAGGTAGAAGAGCTGAGAACTAACCTAACCACCATAAATGATGCAACAAA 600
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 AGAGGTGAAAGAGTCTCTGAAGTTAAGGCAGATAATGCAGACCATTCTTACATTAGGGAA 660
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 TGCATTGAACCAAGGAACAGCTCGAGGATCTGCGGTTGGCTTCAGATTAGACAGTCTTCT 720
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 TAAATTATCAGATACTCGAGCTAGAAACAACAAGATGACACTAATGCATTATTTATGCAA 780
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 GCTTCTTTCTGAGAAATTGCCTGAGCTTCTTGATTTTGACAAAGATTTAATTCATTTGGA 840
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 AGCTGCTTCTAAGATCCAGCTAAAGTTGCTTGCGGAAGAAATGCAAGCAATAAACAAAGG 900
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 TCTAGAGAAGGTTGAGCAAGAATTAGCTGCTTCAGTGAATGACGGTGCAATTTCTGTTGG 960
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 TTTCCGTGAGGCATTGAAAAGCTTTCTTGATGCAGCAGAGGCTGAGGTTAGGTCCCTAAT 1020
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 TTCCTTGTACTCGGAAGTGGGAAGAAACGCTGATTCACTAGCTCAGTATTTTGGCGAGGA 1080
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 TCCAGCACGGTGCCCTTTTGAGCAAGTGACATCAATTCTGGTTATATTTGTGAATATGTT 1140
consensus_6311#1 ------------------------------------------------------------
consensus_6311#0 CAAAAAATCACGTGATGAAAATGCTCGAACTGCGGAACTTGAGAAAAAGAAATTAGAAAA 1200
consensus_6311#1 ---------------------------------------------------ATTAGAAAA 9
*********
consensus_6311#0 GGACAAGGAAAAGGCAACTTTGTCTGCAAAGAAAGTCTTGGAATGATACTACTGCTACAC 1260
consensus_6311#1 GGCCAAGGAAAAGGCAACTTTTTTTGCAAAGAAAGTCTTGGAATGATAATACTGTTACAC 69
** ****************** * ************************ ***** *****
consensus_6311#0 TGAAGTTCCATCTTTGCGAAGTAGAGCCATGATCCAGCACCAGCCATGGCGGAGATGCCA 1320
consensus_6311#1 TGAAGTTCCATCTTTGCGAAGTAGAGCCATGATCCAGCACCAGCCATGGCGGAGATGCCA 129
************************************************************
consensus_6311#0 AATTGTGTATTGTAAACGAGAACCTGCTTCTGCTTTTAGTGGACATGCAGGGCTGTAATG 1380
consensus_6311#1 AATTGTGTATTGTAAACGAGAACCTGCTTTTGCTTTTAGTGGACATGCAGGGCTGTAATG 189
***************************** ******************************
consensus_6311#0 CCTGGAAGCTGCCTTGTTGGATGGGTGCGATCCACGAAATGGGTGTCATTTGGATTGCAA 1440
consensus_6311#1 CCTGGAAGCTGCCTTGTTGGAGGGGTGCGATCCCCGAAAGGGGTGTCATTTGGATTGCAA 249
********************* *********** ***** ********************
consensus_6311#0 CCTTGGAAAGTTCTGTGATTACCAATAGGCGGCATTGGCGATATGGCTGAGCGAAGTGCA 1500
consensus_6311#1 CCTTGGAAAGTTTTGTGATTACCAATAGGCGGCATTGGCGATATGGTTGAGCGAAGTGCA 309
************ ********************************* *************
consensus_6311#0 GCGAGAAGTGCTGCTGCTGACAGTTTTGGTGTAAATACAGTAGTTACTAGGATATAGTTG 1560
consensus_6311#1 GCGAAAAATGCTGCTGCTGACAGTTTTGGTGTAAATACAGTAGTTACTAGGATATAGTTG 369
**** ** ****************************************************
consensus_6311#0 TATTACCTGTACATAGAATATGCAGCCCAAGTGGGAGGAAAGCAATTAAGCAAACAACAG 1620
consensus_6311#1 TATTCCCTGTACATAGAATATGCAGCCCAAGTGGGAGGAAAGCAATTAAGCAAACACCAG 429
**** *************************************************** ***
consensus_6311#0 TAGTGTTGTATAATCAAGAACAATCATGTTTCCCTTCGTCACAGGTGTTAATTCGTGGCT 1680
consensus_6311#1 TAGGGTTGTATAATCAAGAACAATCATGTTTCCCTTCGTCACAGGGGTTAATTCGTGGCT 489
*** ***************************************** **************
consensus_6311#0 CGCCAATTTCTGTATTAAAAAGA------------------------------------- 1703
consensus_6311#1 CGCCAATTTTTTTTGTGCTTTGCATTTTGCTCCTTTTTAATGCTTTGGTTACTCAAGTAA 549
********* * * * *
consensus_6311#0 ----------------------------------------------------------
consensus_6311#1 ACAGCCATGATAACACCAGAATGGGCGTATTGAACTTGGGTGGACAAGCAATCTAAAA 607
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||