These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2280 fasta sequence [CGCCGCCGTCTCGCGCAGCTGCCAGGCCACCACTGTGCGCGCGATGCTCTTTGCCCCCCGCGAAGACGAGCAGCGGCAGCAGCTTCCATGCTTGGCGATTCGATGCCATGTAGGAAGACGAAGATGATGAAGCTAGCGTAGCCTAGTGATGGCTCAACCCGCCATGGAAGGGACGGTGCAGGGTGGAGGAGGAGGAGGAGGAGGAGCACAAGAACCTCGCGGACAGTACGGCGGAGGCGGCAAGAACGGCGGCGACGCCTCCCCGCGCAAGCATGCCGCTGCCGCTGCCGCTGCCGCCTTGCCGCGACACCGGCGATCCAAGAGTGCTTCTTCCGATCGGAGCCTGGAGCCATGCAAGCACGCGGCGTTGCACGATCAGCGCTGCACCCAAGCAGCACAGGCGACGCCGAGCTCTCATCACCAACCGGACGCGACGACGAGGAAATCCCACGCCGCCGCCGCCGCCGCCGCCGAGGGCTCCTCCATCCACCATGTACTGACGAGAGATCGCAGCAGGGCGAGCGCGTCGCCGAGCCATCGCGTCTCGCTGGAGAATGATATCAGGCAGCTGCAGCTTAACCTGCATCAGGAGAGGTCGATCCGGATCATGCTTGACCGGGCGATTGGCCGCGCATCCAGCACTCTGTCTCCTGGCCACATGCATTTCCCAGCTCAGACAAAGGAACTGATTGCAGAGATTGAATTGCTTGAAGAGGAAATCGCAAACCGTGAGCAGCATGTTCTTACCCTCTACAGAAGCATCTTCGATCAATCTGCGTCTGGAGCATCCTCAGGGCAGAGTTCTGGTCTTTCTTCCCCAGCGCATACCAAGAGTATCAGCTCTAGAACAAGACGGCATCCGAGCATAATATCGAGTGCATTTTGCTCATCTAAGAAGCTCCCGCTCCAACCTTTCCAAATCATGACATCGGTATCGGAGTCGGGGAGATCGAAGAGTATGCTGAAAACCAAGATTAAGCATGAATC-TTTCTCAAGTGAAACA-TTGGATATTCACCCTGCAACCTTCCCACCAGATCCAAGGAAGCTTCCTTATTCAGGAAGTAGTTCTTTGACTCGGACCCTGAAAGATCACCTCTACCAATGTCCAAGCAAAATATCCGAAGAAATGGTTAGATGCATGGCCTCCATATACTGTCTTCTTCGCACCGAGTGTCCCGAAAACCCTGAAAAGGTCCGTTCA-CCATTCTTG-TCGAGGTCATCAACAAATGTCATTATTCCTCGGAGAGGAAACGGAGAGGACACTAATTTGTCAAACACCAAATGTACGGTGGAAGTATCTTCAATATCAGCTGATAAGAATCACATGCCAGATGTCTCTTATGCAATTACGCACTACAGGTTGCTTGTGGAGCAGCTTGAAAGGGTTGATCTGAGTATGTCAGAAACCAATATTAAATTGGCCTTCTGGATCAATGTGTATAATTCTCTTGTCATGCATGCATATCTAGCATATGGCATTCCAAACAGTTCTCTGAGAAGAATGGCTCTATTTCACAAGGCTGCCTACAATATTGGAGGCCATGCAGTCACGGCCAATTCCATCGAACACGCTCTACTATGCTGCAGATCTCCACGGATTGGTCGTTGGTTTGAATCCATACTGTCGACGGCGATGCGGAAGAAATGCGCAGATGAGAAGCAACTCGTCCAGCTCAAATTCGGCCTGCCGGACTGCCAGCCTCTCGCCCTGTTCGCTCTGTGCACAGGAGCTTCATCTGATCCCATGCTGAAGGTGTACACGGCGAAGAACATCAGTGAGGAGCTGGAGCGTGCGAAGCGGGAGTTCCTGCAGGCGAGCGTGGTGGTGAGGAAGTCCAAGAAGGTGTTCCTGCCGCGCCTCGTCGAGCGGTACGCCCGGGAGGCCGGCCTCGCCGGCGCCGACGAGCTCCTCGCGTGGGCGCGCGACAACGCCGACGCCCGCGCCACCCAGGACGCCATCCAGCGGCTGTGCGTCGACGCCGGCGGCGGCCGGAGGAAGGCAGCGCAGGCCGTCGAGTGGCTCCCCTACAACGCCAGGTTCCGCTACGCCTTCCCCCGGACCATGGTCGACAAGCCACTCTTCTGAGCAAGAAACAAGCGTACATTCTGATGCTCCAATGTTTCGCGCTGCATTGTTGTTTTGTGATCTTGAGATGAAGAATTGAAGATGAGATGAGATCAGTGACAAGTTCAGAAGTGCTACATCTATTTTTGCTGTGCCGTGTACAGAATTGGATTGTTGCTAATATCTAGTAGCCATGGATTCCTTGAAAAAAAAAA] [+] EMBL AK105615 [CGCCGCCGTCTCGCGCAGCTGCCAGGCCACCACTGTGCGCGCGATGCTCTTTGCCCCCCGCGAAGACGAGCAGCGGCAGCAGCTTCCATGCTTGGCGATTCGATGCCATGTAGGAAGACGAAGATGATGAAGCTAGCGTAGCCTAGTGATGGCTCAACCCGCCATGGAAGGGACGGTGCAGGGTGGAGGAGGAGGAGGAGGAGGAGCACAAGAACCTCGCGGACAGTACGGCGGAGGCGGCAAGAACGGCGGCGACGCCTCCCCGCGCAAGCATGCCGCTGCCGCTGCCGCTGCCGCCTTGCCGCGACACCGGCGATCCAAGAGTGCTTCTTCCGATCGGAGCCTGGAGCCATGCAAGCACGCGGCGTTGCACGATCAGCGCTGCACCCAAGCAGCACAGGCGACGCCGAGCTCTCATCACCAACCGGACGCGACGACGAGGAAATCCCACGCCGCCGCCGCCGCCGCCGCCGAGGGCTCCTCCATCCACCATGTACTGACGAGAGATCGCAGCAGGGCGAGCGCGTCGCCGAGCCATCGCGTCTCGCTGGAGAATGATATCAGGCAGCTGCAGCTTAACCTGCATCAGGAGAGGTCGATCCGGATCATGCTTGACCGGGCGATTGGCCGCGCATCCAGCACTCTGTCTCCTGGCCACATGCATTTCCCAGCTCAGACAAAGGAACTGATTGCAGAGATTGAATTGCTTGAAGAGGAAATCGCAAACCGTGAGCAGCATGTTCTTACCCTCTACAGAAGCATCTTCGATCAATCTGCGTCTGGAGCATCCTCAGGGCAGAGTTCTGGTCTTTCTTCCCCAGCGCATACCAAGAGTATCAGCTCTAGAACAAGACGGCATCCGAGCATAATATCGAGTGCATTTTGCTCATCTAAGAAGCTCCCGCTCCAACCTTTCCAAATCATGACATCGGTATCGGAGTCGGGGAGATCGAAGAGTATGCTGAAAACCAAGATTAAGCATGAATC TTTCTCAAGTGAAACA TTGGATATTCACCCTGCAACCTTCCCACCAGATCCAAGGAAGCTTCCTTATTCAGGAAGTAGTTCTTTGACTCGGACCCTGAAAGATCACCTCTACCAATGTCCAAGCAAAATATCCGAAGAAATGGTTAGATGCATGGCCTCCATATACTGTCTTCTTCGCACCGAGTGTCCCGAAAACCCTGAAAAGGTCCGTTCA CCATTCTTG TCGAGGTCATCAACAAATGTCATTATTCCTCGGAGAGGAAACGGAGAGGACACTAATTTGTCAAACACCAAATGTACGGTGGAAGTATCTTCAATATCAGCTGATAAGAATCACATGCCAGATGTCTCTTATGCAATTACGCACTACAGGTTGCTTGTGGAGCAGCTTGAAAGGGTTGATCTGAGTATGTCAGAAACCAATATTAAATTGGCCTTCTGGATCAATGTGTATAATTCTCTTGTCATGCATGCATATCTAGCATATGGCATTCCAAACAGTTCTCTGAGAAGAATGGCTCTATTTCACAAGGCTGCCTACAATATTGGAGGCCATGCAGTCACGGCCAATTCCATCGAACACGCTCTACTATGCTGCAGATCTCCACGGATTGGTCGTTGGTTTGAATCCATACTGTCGACGGCGATGCGGAAGAAATGCGCAGATGAGAAGCAACTCGTCCAGCTCAAATTCGGCCTGCCGGACTGCCAGCCTCTCGCCCTGTTCGCTCTGTGCACAGGAGCTTCATCTGATCCCATGCTGAAGGTGTACACGGCGAAGAACATCAGTGAGGAGCTGGAGCGTGCGAAGCGGGAGTTCCTGCAGGCGAGCGTGGTGGTGAGGAAGTCCAAGAAGGTGTTCCTGCCGCGCCTCGTCGAGCGGTACGCCCGGGAGGCCGGCCTCGCCGGCGCCGACGAGCTCCTCGCGTGGGCGCGCGACAACGCCGACGCCCGCGCCACCCAGGACGCCATCCAGCGGCTGTGCGTCGACGCCGGCGGCGGCCGGAGGAAGGCAGCGCAGGCCGTCGAGTGGCTCCCCTACAACGCCAGGTTCCGCTACGCCTTCCCCCGGACCATGGTCGACAAGCCACTCTTCTGAGCAAGAAACAAGCGTACATTCTGATGCTCCAATGTTTCGCGCTGCATTGTTGTTTTGTGATCTTGAGATGAAGAATTGA ] [+] EMBL D43408 [ aatGCATGAATCGTTTCTCAAGTGAAACANTTGGATATTCACCCTGCAACCTTCCCACCAGATCCAAGGAAGCTTCCTTATTCAGGAAGTAGTTCTTTGACTCGGACCCTGAAAGATCACCTCTACCAATGTCCAAGCAAAATATCCGAAGAAATGGTTAGATGCATGGCCTCCATATACTGTCTTCTTCGCACCGAGTGTCCCGAAAACCCTGNAAAGGTCCGTTCACCCATTCTTGTTCGNGGgtc ] [+] EMBL BI805026 [ GTCGAGCGGTACGCCCGGGA GCCGGCCTCGCCGGCGCCGACGAGCTCCTCGCGTGGGCGCGCGACAACGCCGACGCCCGCGCCACCCAGGACGCCATCCAGCGGCTGTGCGTCGACGCCGGCGGCGGCCGGAGGAAGGCAGCGCAGGCCGTCGAGTGGCTCCCCTACAACGCCAGGTTCCGCTACGCCTTCCCCCGGACCATGGTCGACAAGCCACTCTTCTGAGC AGAAACCAGCGTACATTCTGATGCTCC ATGTTTCGCGCTGCATTGTTGTTTTGTGATCTTGAGATGAAGAATTGAAGATGAGATGAGATCAGTGACAAGTTCAGAAGTGCTACATCTATTTTTGCTGTGCCGTGTACAGAATTGGATTGTTGCTAATATCTAGTAGCCATGGATTCCTTGAAAAAAAAAA] consensusID : consensus_6312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [CATCTGAGAAGAAAATCAACCTTTTTACAAGCATTTAGCAAAATCCTCAAAACGACTATCATATTTATTTCTGTGTATGTCATGCTGCCAATTTTTAACCTAGTCTTTTATATGCCCTTTTGAGGAATCATAGGTGCTAGTCAATCATCAGCCGAAAATCTATTTTAGGGTGCATATTTCATGTTCATTGTGTTTGATTCAGAAACATGCCACAGTGATGCTTTATTCCCCAGATTTATACCTTGAGCCTGTTGGTTTTAATTCAGAAGATGTTCTAAAAGCAGAAAATCACATATTGGACTTATCTTGACTATTGTTTTGCCTTTTCTTCCTTAAAAAAAGCTTCCTTATTCAGGAAGTAGTTCTTTGACTCGGACCCTGAAAGATCACCTCTACCAATGTCCAAGCAAAATATCCGAAGAAATGGTTAGATGCATGGCCTCCATATACTGTCTTCTTCGCACCGAGTGTCCCGAAAACCCTGAAAAGGTCCGT] [+] EMBL CF324680 [CATCTGAGAAGAAAATCAACCTTTTTACAAGCATTTAGCAAAATCCTCAAAACGACTATCATATTTATTTCTGTGTATGTCATGCTGCCAATTTTTAACCTAGTCTTTTATATGCCCTTTTGAGGAATCATAGGTGCTAGTCAATCATCAGCCGAAAATCTATTTTAGGGTGCATATTTCATGTTCATTGTGTTTGATTCAGAAACATGCCACAGTGATGCTTTATTCCCCAGATTTATACCTTGAGCCTGTTGGTTTTAATTCAGAAGATGTTCTAAAAGCAGAAAATCACATATTGGACTTATCTTGACTATTGTTTTGCCTTTTCTTCCTTAAAAAAAGCTTCCTTATTCAGGAAGTAGTTCTTTGACTCGGACCCTGAAAGATCACCTCTACCAATGTCCAAGCAAAATATCCGAAGAAATGGTTAGATGCATGGCCTCCATATACTGTCTTCTTCGCACCGAGTGTCCCGAAAACCCTGAAAAGGTCCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6312#0 CGCCGCCGTCTCGCGCAGCTGCCAGGCCACCACTGTGCGCGCGATGCTCTTTGCCCCCCG 60 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 CGAAGACGAGCAGCGGCAGCAGCTTCCATGCTTGGCGATTCGATGCCATGTAGGAAGACG 120 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 AAGATGATGAAGCTAGCGTAGCCTAGTGATGGCTCAACCCGCCATGGAAGGGACGGTGCA 180 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 GGGTGGAGGAGGAGGAGGAGGAGGAGCACAAGAACCTCGCGGACAGTACGGCGGAGGCGG 240 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 CAAGAACGGCGGCGACGCCTCCCCGCGCAAGCATGCCGCTGCCGCTGCCGCTGCCGCCTT 300 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 GCCGCGACACCGGCGATCCAAGAGTGCTTCTTCCGATCGGAGCCTGGAGCCATGCAAGCA 360 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 CGCGGCGTTGCACGATCAGCGCTGCACCCAAGCAGCACAGGCGACGCCGAGCTCTCATCA 420 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 CCAACCGGACGCGACGACGAGGAAATCCCACGCCGCCGCCGCCGCCGCCGCCGAGGGCTC 480 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 CTCCATCCACCATGTACTGACGAGAGATCGCAGCAGGGCGAGCGCGTCGCCGAGCCATCG 540 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 CGTCTCGCTGGAGAATGATATCAGGCAGCTGCAGCTTAACCTGCATCAGGAGAGGTCGAT 600 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 CCGGATCATGCTTGACCGGGCGATTGGCCGCGCATCCAGCACTCTGTCTCCTGGCCACAT 660 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 GCATTTCCCAGCTCAGACAAAGGAACTGATTGCAGAGATTGAATTGCTTGAAGAGGAAAT 720 consensus_6312#1 --------------------------------------------CATCTGAGAAGAAAAT 16 *** ** **** consensus_6312#0 CGCAAACCGTGAGCAGCATGTTCTTACCCTCTACAGAAGCATCTTCGATCAATCTGCGTC 780 consensus_6312#1 CA-ACCTTTTTACAAGCATTTAGCAAAATCCTCAAAACGACTATCATATTTATTTCTGTG 75 * * * * ***** * * ** * * * * * ** ** * ** consensus_6312#0 TGGAGCATCCTCAGGGCAGAGTTCTGGTCT--TTCTTCCCCAGCGCATACCAAGAGTATC 838 consensus_6312#1 TATGTCATGCT----GCCAATTTTTAACCTAGTCTTTTATATGCCCTTTTGAGGAATCAT 131 * *** ** ** * ** * ** * ** ** * * * ** * consensus_6312#0 AGCTCTAGAACAAGACGGCATCCGAGCAT--AATATCGAGTGCATTTTGCTCATCTAAGA 896 consensus_6312#1 AGGTGCTAGTCAAT-CATCAGCCGAAAATCTATTTTAGGGTGCATATTTCATGTTCATTG 190 ** * *** * ** **** ** * * * * ****** ** * * * consensus_6312#0 AGCTCCCGCTCCAACCTTTCCA-AATCATGACATCGGTATCGGAGTCGGG----GAGATC 951 consensus_6312#1 TGTTTGATTCAGAAACATGCCACAGTGATGCTTTATTCCCCAGATTTATACCTTGAGCCT 250 * * ** * * *** * * *** * * ** * *** consensus_6312#0 GAAGAGTATGCTGAAAACCAAGATTAAGCATGAATCTTTCTCAAGTGAAACATTGGATAT 1011 consensus_6312#1 GTTGGTTTTAATTCAGAAGATGTTCTAAAAGCAGAAAATCACATATTGGACTTATCTTGA 310 * * * * * * * * * * * * * ** ** * ** * * consensus_6312#0 TCACCCTGCAACCTTCCCACCAGATCCAAGGAAGCTTCCTTATTCAGGAAGTAGTTCTTT 1071 consensus_6312#1 CTATTGTTTTGCCTTTTCTTC--CTTAAAAAAAGCTTCCTTATTCAGGAAGTAGTTCTTT 368 * * **** * * * ** ***************************** consensus_6312#0 GACTCGGACCCTGAAAGATCACCTCTACCAATGTCCAAGCAAAATATCCGAAGAAATGGT 1131 consensus_6312#1 GACTCGGACCCTGAAAGATCACCTCTACCAATGTCCAAGCAAAATATCCGAAGAAATGGT 428 ************************************************************ consensus_6312#0 TAGATGCATGGCCTCCATATACTGTCTTCTTCGCACCGAGTGTCCCGAAAACCCTGAAAA 1191 consensus_6312#1 TAGATGCATGGCCTCCATATACTGTCTTCTTCGCACCGAGTGTCCCGAAAACCCTGAAAA 488 ************************************************************ consensus_6312#0 GGTCCGTTCACCATTCTTGTCGAGGTCATCAACAAATGTCATTATTCCTCGGAGAGGAAA 1251 consensus_6312#1 GGTCCGT----------------------------------------------------- 495 ******* consensus_6312#0 CGGAGAGGACACTAATTTGTCAAACACCAAATGTACGGTGGAAGTATCTTCAATATCAGC 1311 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 TGATAAGAATCACATGCCAGATGTCTCTTATGCAATTACGCACTACAGGTTGCTTGTGGA 1371 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 GCAGCTTGAAAGGGTTGATCTGAGTATGTCAGAAACCAATATTAAATTGGCCTTCTGGAT 1431 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 CAATGTGTATAATTCTCTTGTCATGCATGCATATCTAGCATATGGCATTCCAAACAGTTC 1491 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 TCTGAGAAGAATGGCTCTATTTCACAAGGCTGCCTACAATATTGGAGGCCATGCAGTCAC 1551 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 GGCCAATTCCATCGAACACGCTCTACTATGCTGCAGATCTCCACGGATTGGTCGTTGGTT 1611 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 TGAATCCATACTGTCGACGGCGATGCGGAAGAAATGCGCAGATGAGAAGCAACTCGTCCA 1671 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 GCTCAAATTCGGCCTGCCGGACTGCCAGCCTCTCGCCCTGTTCGCTCTGTGCACAGGAGC 1731 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 TTCATCTGATCCCATGCTGAAGGTGTACACGGCGAAGAACATCAGTGAGGAGCTGGAGCG 1791 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 TGCGAAGCGGGAGTTCCTGCAGGCGAGCGTGGTGGTGAGGAAGTCCAAGAAGGTGTTCCT 1851 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 GCCGCGCCTCGTCGAGCGGTACGCCCGGGAGGCCGGCCTCGCCGGCGCCGACGAGCTCCT 1911 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 CGCGTGGGCGCGCGACAACGCCGACGCCCGCGCCACCCAGGACGCCATCCAGCGGCTGTG 1971 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 CGTCGACGCCGGCGGCGGCCGGAGGAAGGCAGCGCAGGCCGTCGAGTGGCTCCCCTACAA 2031 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 CGCCAGGTTCCGCTACGCCTTCCCCCGGACCATGGTCGACAAGCCACTCTTCTGAGCAAG 2091 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 AAACAAGCGTACATTCTGATGCTCCAATGTTTCGCGCTGCATTGTTGTTTTGTGATCTTG 2151 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 AGATGAAGAATTGAAGATGAGATGAGATCAGTGACAAGTTCAGAAGTGCTACATCTATTT 2211 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 TTGCTGTGCCGTGTACAGAATTGGATTGTTGCTAATATCTAGTAGCCATGGATTCCTTGA 2271 consensus_6312#1 ------------------------------------------------------------ consensus_6312#0 AAAAAAAAA 2280 consensus_6312#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||