These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_632#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [AGATGCGGCTTTGCCGCATAATGGACCAGCCAGTACGAAATACTCCATACGTTTCATATTGATCATCATTTAACACAAATTAAAATTTTTAAATTGATCATCATGTAATCATAGCCCTTCGTTCGACGTGTAATATTATTGCATTTAAGCATGAAAATTGAGTATGCATGCATGTATGTAGGAATTCGAGGCAGTAAAGCTATCGTTTCATAGAGCAAGTTTAATACCAGTATAACCAACTACTGACTCCAAATCATCTATAGTCAATTTAGTAGCCAATTCATATAATACTTACCTATAAACATTACTACACAATTCATACTTGGTTGCACCTGTCATACACACATGTATCTTGGAGTCTGGAGTCTGTGCTATAGCTGGCTATAAATCTGTAGCTCGCTGCTCTTCTCTCTTCTCTTTTATCTTCTCGAAATGTGTTTATAACTGGACCTGCTCTTATGTATGGGGCCTAAGAGGAGTTAAAGTGTGCATGTTTATTGATTTTTCCCTACCACATACTCACATTAAGTGAAATGCAGGAAAGTTAATATTTTTTTTT] [+] EMBL CB096797 [AGATGCGGCTTTGCCGCATAATGGACCAGCCAGTACGAAATACTCCATACGTTTCATATTGATCATCATTTAACACAAATTAAAATTTTTAAATTGATCATCATGTAATCATAGCCCTTCGTTCGACGTGTAATATTATTGCATTTAAGCATGAAAATTGAGTATGCATGCATGTATGTAGGAATTCGAGGCAGTAAAGCTATCGTTTCATAGAGCAAGTTTAATACCAGTATAACCAACTACTGACTCCAAATCATCTATAGTCAATTTAGTAGCCAATTCATATAATACTTACCTATAAACATTACTACACAATTCATACTTGGTTGCACCTGTCATACACACATGTATCTTGGAGTCTGGAGTCTGTGCTATAGCTGGCTATAAATCTGTAGCTCGCTGCTCTTCTCTCTTCTCTTTTATCTTCTCGAAATGTGTTTATAACTGGACCTGCTCTTATGTATGGGGCCTAAGAGGAGTTAAAGTGTGCATGTTTATTGATTTTTCCCTACCACATACTCACATTAAGTGAAATGCAGGAAAGTTAATATTTTTTTTT] consensusID : consensus_632#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 167 fasta sequence [GGGATAATACTAGAAAGTTTGTGATAATCTGAAACGGAGGTAGTAGAAAATAGATGCGGCTTTGCCGCATAATGGACCAAGCCAGTACGAAATACTGCCGTACGTTTCATATTGATCATCATTTAACACNAAATTAAAATTTTTAAATTGATCATCCAAAAAAAAAA] [+] EMBL BI805670 [GGGATAATACTAGAAAGTTTGTGATAATCTGAAACGGAGGTAGTAGAAAATAGATGCGGCTTTGCCGCATAATGGACCAAGCCAGTACGAAATACTGCCGTACGTTTCATATTGATCATCATTTAACACNAAATTAAAATTTTTAAATTGATCATCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_632#0 ---------------------------------------------------AGATGCGGC 9 consensus_632#1 GGGATAATACTAGAAAGTTTGTGATAATCTGAAACGGAGGTAGTAGAAAATAGATGCGGC 60 ********* consensus_632#0 TTTGCCGCATAATGGACCA-GCCAGTACGAAATACT-CCATACGTTTCATATTGATCATC 67 consensus_632#1 TTTGCCGCATAATGGACCAAGCCAGTACGAAATACTGCCGTACGTTTCATATTGATCATC 120 ******************* **************** ** ******************** consensus_632#0 ATTTAACACAAA-TTAAAATTTTTAAATTGATCATCATGTAATCATAGCCCTTCGTTCGA 126 consensus_632#1 ATTTAACACNAAATTAAAATTTTTAAATTGATCATCCAAAAAAAAAA------------- 167 ********* ** *********************** ** * * consensus_632#0 CGTGTAATATTATTGCATTTAAGCATGAAAATTGAGTATGCATGCATGTATGTAGGAATT 186 consensus_632#1 ------------------------------------------------------------ consensus_632#0 CGAGGCAGTAAAGCTATCGTTTCATAGAGCAAGTTTAATACCAGTATAACCAACTACTGA 246 consensus_632#1 ------------------------------------------------------------ consensus_632#0 CTCCAAATCATCTATAGTCAATTTAGTAGCCAATTCATATAATACTTACCTATAAACATT 306 consensus_632#1 ------------------------------------------------------------ consensus_632#0 ACTACACAATTCATACTTGGTTGCACCTGTCATACACACATGTATCTTGGAGTCTGGAGT 366 consensus_632#1 ------------------------------------------------------------ consensus_632#0 CTGTGCTATAGCTGGCTATAAATCTGTAGCTCGCTGCTCTTCTCTCTTCTCTTTTATCTT 426 consensus_632#1 ------------------------------------------------------------ consensus_632#0 CTCGAAATGTGTTTATAACTGGACCTGCTCTTATGTATGGGGCCTAAGAGGAGTTAAAGT 486 consensus_632#1 ------------------------------------------------------------ consensus_632#0 GTGCATGTTTATTGATTTTTCCCTACCACATACTCACATTAAGTGAAATGCAGGAAAGTT 546 consensus_632#1 ------------------------------------------------------------ consensus_632#0 AATATTTTTTTTT 559 consensus_632#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||