These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6332#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 700 fasta sequence [NAATGTTGTCTCGAAGTGAGTGCCNTGGAAACATTGGAAAATACTTCTCCCTTCAAAAGAATTAGCCATCTTAAGAGATACACTTGTCAATGCAGAGAATCTTCACTATGTAACTGATGATGTTCAGAATCTAATGACAAAACTCAGTAACCTAGAAGCAAAACTAGAAGAGGCTGAAAGTGTGATAGTTAAACTGAGGGAGGACACCAGAACTACCATTAGGGAGCGGGATAAGCTAAAGCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTTGCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTGCACCTATGATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGAGTACGTGCTGAGCTTTCTCACAGCAGCTGGAGTAGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCTTGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGGCGTCCACTTACTAGGTGATTAACCAATTAAACGGAGTACATAAAACAGCATGATTTTTTATTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTGGACCGTGGTCGCTAGAGATAATCCAGGATGTTGTTCAGAGTTAAAAAAAAAAACACT] [+] EMBL AU088670 [NAATGTTGTCTCGAAGTGAGTGCCNTGGAAACATTGGAAAATACTTCTCCCTTCAAAAGAATTAGCCATCTTAAGAGATACACTTGTCAATGCAGAGAATCTTCACTATGTAACTGATGATGTTCAGAATCTAATGACAAAACTCAGTAACCTAGAAGCAAAACTAGAAGAGGCTGAAAGTGTGATAGTTAAACTGAGGGAGGACACCAGAACTACCATTAGGGAGCGGGATAAGCTAAAGCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTTGCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTGCACCTATGATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGAGTACGTGCTGAGCTTTCTCACAGCAGCTGGAGTAGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCTTGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGGCGTCCACTTACTAGGTGATTAACCAATTAAACGGAGTACATAAAACAGCATGATTTTTTATTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTGGACCGTGGTCGCTAGAGATAATCCAGGATGTTGTTCAGAGTTAAAAAAAAAAA ] [-] EMBL CF307381 [ TGTCAATGCAGAGAATCTTCACTATGTAACTGATGATGTTCAGAATCTAATGACAAAACTCAGTAACCTAGAAGCAAAACTAGAAGAGGCTGAAAGTGTGATAGTTAAACTGAGGGAGGACACCAGAACTACCATTAGGGAGCGGGATAAGCTAAAGCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTTGCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTGCACCTATGATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGAGTACGTGCTGAGCTTTCTCACAGCAGCTGGAGTAGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCTTGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGGCGTCCACTTACTAGGTGATTAACCAATTAAACGGAGTACATAAAACAGCATGATTTTTTATTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTGGACCGTGGTCGCTAGAGATAATCCAGGATGTTGTTCAGAGTTAAAAcctttgtcact] [+] EMBL OSR03721A [ AACTACCATTAGGGAGCGGGATAAGCTAAAGCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTTGCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTGCACCTATGATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGAGTACGTGCTGAGCTTTCTCACAGCAGCTGGAGTAGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCTTGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGGCGTCCACTTACTAGGTGATTAACCAATTAAACGGAGTACATAAAACAGCATGATTTTTTATTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTG ] consensusID : consensus_6332#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [ AGGGACGGNATAAGCTAAAGCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTTGCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTNCACCTATGATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGNGTACGTGCTGAGCTTTCTCACAGCAGCTGGNGTNGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCTTGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGGCGTCCACTTACTAGGTGATTAACCAATTAAACGGNGTACATAAAACAGCATGATTTTTTATTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTGGACCGTGGTCGCTAGAGATAATCCAGGATGTTGTTCAGAGTTAAAACCTTTGTTNCTAAAAAANAA] [+] EMBL AU164535 [ AGGGACGGNATAAGCTAAAGCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTTGCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTNCACCTATGATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGNGTACGTGCTGAGCTTTCTCACAGCAGCTGGNGTNGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCTTGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGGCGTCCACTTACTAGGTGATTAACCAATTAAACGGNGTACATAAAACAGCATGATTTTTTATTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTGGACCGTGGTCGCTAGAGATAATCCAGGATGTTGTTCAGAGTTAAAACCTTTGTTNCTAAAAAANAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6332#0 NAATGTTGTCTCGAAGTGAGTGCCNTGGAAACATTGGAAAATACTTCTCCCTTCAAAAGA 60 consensus_6332#1 ------------------------------------------------------------ consensus_6332#0 ATTAGCCATCTTAAGAGATACACTTGTCAATGCAGAGAATCTTCACTATGTAACTGATGA 120 consensus_6332#1 ------------------------------------------------------------ consensus_6332#0 TGTTCAGAATCTAATGACAAAACTCAGTAACCTAGAAGCAAAACTAGAAGAGGCTGAAAG 180 consensus_6332#1 ------------------------------------------------------------ consensus_6332#0 TGTGATAGTTAAACTGAGGGAGGACACCAGAACTACCATTAGGGAGCGGGATAAGCTAAA 240 consensus_6332#1 -----------------------------------------AGGGACGGNATAAGCTAAA 19 ** *** ********** consensus_6332#0 GCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTT 300 consensus_6332#1 GCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTT 79 ************************************************************ consensus_6332#0 GCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTGCACCTATG 360 consensus_6332#1 GCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTNCACCTATG 139 *************************************************** ******** consensus_6332#0 ATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGAGTACGTGCTGA 420 consensus_6332#1 ATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGNGTACGTGCTGA 199 ************************************************ *********** consensus_6332#0 GCTTTCTCACAGCAGCTGGAGTAGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCT 480 consensus_6332#1 GCTTTCTCACAGCAGCTGGNGTNGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCT 259 ******************* ** ************************************* consensus_6332#0 TGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGG 540 consensus_6332#1 TGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGG 319 ************************************************************ consensus_6332#0 CGTCCACTTACTAGGTGATTAACCAATTAAACGGAGTACATAAAACAGCATGATTTTTTA 600 consensus_6332#1 CGTCCACTTACTAGGTGATTAACCAATTAAACGGNGTACATAAAACAGCATGATTTTTTA 379 ********************************** ************************* consensus_6332#0 TTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTGGACCGTGGTCGCTAGAG 660 consensus_6332#1 TTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTGGACCGTGGTCGCTAGAG 439 ************************************************************ consensus_6332#0 ATAATCCAGGATGTTGTTCAGAGTTAAAAAAAAAAACACT--------- 700 consensus_6332#1 ATAATCCAGGATGTTGTTCAGAGTTAAAACCTTTGTTNCTAAAAAANAA 488 ***************************** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||