Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6338 cluster # 6338       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6338#0 length = 886 sequences # 2  
consensus_6338#1 length = 825 sequences # 2  

consensusID : consensus_6338#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 886
fasta sequence
                              [CCATCCATAGCTATCCAAGAGCCCCAAATCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCGCGCCCACGCTCGCGCTCCCACCCGCTTCGCGGTCGCAGCATCCGCGCGCGCCGCACGGTTCCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGGTTCATCTGGGACGAAGGGGCCAACACCATGACAGAGAGTGAATTGGAGGCAAGCAGGCTTATTGACGATCTTGGCCTACAAGGCAAACAGCAGTATCCTAACTCACAACACAAGCGTTACATTGTCAAAGATGGAGCACCAACACTGATTCCCTCAGATCCCATTGCGCTCATGAAAAGCACTGTTCTTTCTACAAAATCAAAGCTCAAGCTATTTCTGGAACCATTTCTCTATGAGAAATCTAGCAGAAGGACCTCGGGAAAAGTGTCTGATGAACATTTAAGTGAGAGTGTTGCAAGTTTCTTTGAACGCCACTTTGGAAAAGAGGTTGTTGATTATCTTATTGATCCATTTGTGGCTGGAACAAGCGGAGGAGATCCTGAGTCATTATCAATTCGTCATGCATTTCCAGCATTATGGAATTTGGAGAATAAGTATGGCTCTGTCATTGCTGGTGCCATCTTGTCCAAACTATCCACTAAGGGTGATTCAGTGAAGACAGGAGGTGCTTCGCCAGGGAAAGGAAGGAATAAACGTGTGTCATTTTCATTTCA]

[+] EMBL CB657746             [CCATCCATAGCTATCCAAGAGCCCCAAATCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCGCGCCCACGCTCGCGCTCCCACCCGCTTCGCGGTCGCAGCATCCGCGCGCGCCGCACGGTTCCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGGTTCATCTGGGACGAAGGGGCCAACACCATGACAGAGAGTGAATTGGAGGCAAGCAGGCTTATTGACGATCTTGGCCTACAAGGCAAACAGCAGTATCCTAACTCACAACACAAGCGTTACATTGTCAAAGATGGAGCACCAACACTGATTCCCTCAGATCCCATTGCGCTCATGAAAAGCACTGTTCTTTCTACAAAATCAAAGCTCAAGCTATTTCTGGAACCATTTCTCTATGAGAAATCTAGCAGAAGGACCTCGGGAAAAGTGTCTGATGAACATTTAAGTGAGAGTGTTGCAAGTTTCTTTGAACGCCACTTTGGAAAAGAGGTTGTTGATTATCTTATTGATCCATTTGTGGCTGGAACAAGCGGAGGAGATCCTG                                                                                                                                                                            ]
[+] EMBL CB678131             [                                                                                                                                                                              CCGCCTACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGGTTCATCTGGGACGAAGGGGCCAACACCATGACAGAGAGTGAATTGGAGGCAAGCAGGCTTATTGACGATCTTGGCCTACAAGGCAAACAGCAGTATCCTAACTCACAACACAAGCGTTACATTGTCAAAGATGGAGCACCAACACTGATTCCCTCAGATCCCATTGCGCTCATGAAAAGCACTGTTCTTTCTACAAAATCAAAGCTCAAGCTATTTCTGGAACCATTTCTCTATGAGAAATCTAGCAGAAGGACCTCGGGAAAAGTGTCTGATGAACATTTAAGTGAGAGTGTTGCAAGTTTCTTTGAACGCCACTTTGGAAAAGAGGTTGTTGATTATCTTATTGATCCATTTGTGGCTGGAACAAGCGGAGGAGATCCTGAGTCATTATCAATTCGTCATGCATTTCCAGCATTATGGAATTTGGAGAATAAGTATGGCTCTGTCATTGCTGGTGCCATCTTGTCCAAACTATCCACTAAGGGTGATTCAGTGAAGACAGGAGGTGCTTCGCCAGGGAAAGGAAGGAATAAACGTGTGTCATTTTCATTTCA]


>consensus_6338#0 CCATCCATAGCTATCCAAGAGCCCCAAATCAGATGCTCTCTCCTGCCACCACCTTCTCCT CCTCCTCCTCCTCCTCGTCGCCGTCGCGCGCCCACGCTCGCGCTCCCACCCGCTTCGCGG TCGCAGCATCCGCGCGCGCCGCACGGTTCCGCCCCGCGCGCGCCATGGCCGCCTCCGACG ACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGG CGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGG GTGGGAAGATACGGACCAACTCCGAGGGCGGGTTCATCTGGGACGAAGGGGCCAACACCA TGACAGAGAGTGAATTGGAGGCAAGCAGGCTTATTGACGATCTTGGCCTACAAGGCAAAC AGCAGTATCCTAACTCACAACACAAGCGTTACATTGTCAAAGATGGAGCACCAACACTGA TTCCCTCAGATCCCATTGCGCTCATGAAAAGCACTGTTCTTTCTACAAAATCAAAGCTCA AGCTATTTCTGGAACCATTTCTCTATGAGAAATCTAGCAGAAGGACCTCGGGAAAAGTGT CTGATGAACATTTAAGTGAGAGTGTTGCAAGTTTCTTTGAACGCCACTTTGGAAAAGAGG TTGTTGATTATCTTATTGATCCATTTGTGGCTGGAACAAGCGGAGGAGATCCTGAGTCAT TATCAATTCGTCATGCATTTCCAGCATTATGGAATTTGGAGAATAAGTATGGCTCTGTCA TTGCTGGTGCCATCTTGTCCAAACTATCCACTAAGGGTGATTCAGTGAAGACAGGAGGTG CTTCGCCAGGGAAAGGAAGGAATAAACGTGTGTCATTTTCATTTCA



consensusID : consensus_6338#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 825
fasta sequence
                              [GACGAACCCCGCACAAGACAACAAGTAAATCCCCATCCATAGCTATCCAAGAGCCCCAAATCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCGCGCCCACGCTCGCGCTCTCACCCGCTTCGC-GTCGCAGCATCCGCGCGCGCCGCACGGTTCCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGGTTCATCTGGGACGAAGGGGCCAACACCATGGTGAGCGCGCTTTGGTGTGCCTCGCTGCTTCTGTTTGATCACAATCTCGGGCTGTGTTGGTCTGCATTGCTGCAAATGCTGCTTCTGTATATTTTGGATTGTGGCGCACTGGCGCTGCTGCGGCTATTTGAGGGCTGGAGCACACTAGCGAGTAGTGCTCCTTGGTGCGCAGGCTGAGGAAACTTGTGTTTGTGAACGAAATGCAAGCTGCTCACTAATGCAGACAGTTGTTCCTGCAAATGGAGAAGTGTTTTCTTCTGCATTCGTATCCCACAACAGACGTGAACCCTTTCTGCTATGAGCATCATTGAACACCGTTATGTAACTTATCATAGCCTGATTCGATTTCATTCACCATGATCTATAACTATTATACTTACCACATTAGTTACTTTGTACTACTCTTAGTAAAATAAATAAATTATTTTAATA]

[+] EMBL C97940               [GACGAACCCCGCACAAGACAACAAGTAAATCCCCATCCATAGCTATCCAAGAGCCCCAAATCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCGCGCCCACGCTCGCGCTCTCACCCGCTTCGC GTCGCAGCATCCGCGCGCGCCGCACGGTTCCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK108365             [                                                                   CTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCGCGCCCACGCTCGCGCTCCCACCCGCTTCGCGGTCGCAGCACCCGCGCGCGCCGCACGGTTCCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGGTTCATCTGGGACGAAGGGGCCAACACCATGGTGAGCGCGCTTTGGTGTGCCTCGCTGCTTCTGTTTGATCACAATCTCGGGCTGTGTTGGTCTGCATTGCTGCAAATGCTGCTTCTGTATATTTTGGATTGTGGCGCACTGGCGCTGCTGCGGCTATTTGAGGGCTGGAGCACACTAGCGAGTAGTGCTCCTTGGTGCGCAGGCTGAGGAAACTTGTGTTTGTGAACGAAATGCAAGCTGCTCACTAATGCAGACAGTTGTTCCTGCAAATGGAGAAGTGTTTTCTTCTGCATTCGTATCCCACAACAGACGTGAACCCTTTCTGCTATGAGCATCATTGAACACCGTTATGTAACTTATCATAGCCTGATTCGATTTCATTCACCATGATCTATAACTATTATACTTACCACATTAGTTACTTTGTACTACTCTTAGTAAAATAAATAAATTATTTTAATA]


>consensus_6338#1 GACGAACCCCGCACAAGACAACAAGTAAATCCCCATCCATAGCTATCCAAGAGCCCCAAA TCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCG CGCCCACGCTCGCGCTCTCACCCGCTTCGCGTCGCAGCATCCGCGCGCGCCGCACGGTTC CGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGTC GTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAG GTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGC GGGTTCATCTGGGACGAAGGGGCCAACACCATGGTGAGCGCGCTTTGGTGTGCCTCGCTG CTTCTGTTTGATCACAATCTCGGGCTGTGTTGGTCTGCATTGCTGCAAATGCTGCTTCTG TATATTTTGGATTGTGGCGCACTGGCGCTGCTGCGGCTATTTGAGGGCTGGAGCACACTA GCGAGTAGTGCTCCTTGGTGCGCAGGCTGAGGAAACTTGTGTTTGTGAACGAAATGCAAG CTGCTCACTAATGCAGACAGTTGTTCCTGCAAATGGAGAAGTGTTTTCTTCTGCATTCGT ATCCCACAACAGACGTGAACCCTTTCTGCTATGAGCATCATTGAACACCGTTATGTAACT TATCATAGCCTGATTCGATTTCATTCACCATGATCTATAACTATTATACTTACCACATTA GTTACTTTGTACTACTCTTAGTAAAATAAATAAATTATTTTAATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6338#0      --------------------------------CCATCCATAGCTATCCAAGAGCCCCAAA 28
consensus_6338#1      GACGAACCCCGCACAAGACAACAAGTAAATCCCCATCCATAGCTATCCAAGAGCCCCAAA 60
                                                      ****************************

consensus_6338#0      TCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCG 88
consensus_6338#1      TCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCG 120
                      ************************************************************

consensus_6338#0      CGCCCACGCTCGCGCTCCCACCCGCTTCGCGGTCGCAGCATCCGCGCGCGCCGCACGGTT 148
consensus_6338#1      CGCCCACGCTCGCGCTCTCACCCGCTTCGCG-TCGCAGCATCCGCGCGCGCCGCACGGTT 179
                      ***************** ************* ****************************

consensus_6338#0      CCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGT 208
consensus_6338#1      CCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGT 239
                      ************************************************************

consensus_6338#0      CGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCA 268
consensus_6338#1      CGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCA 299
                      ************************************************************

consensus_6338#0      GGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGG 328
consensus_6338#1      GGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGG 359
                      ************************************************************

consensus_6338#0      CGGGTTCATCTGGGACGAAGGGGCCAACACCATGACAGAGAGTGAATTGGAGGCAAGCAG 388
consensus_6338#1      CGGGTTCATCTGGGACGAAGGGGCCAACACCATGGT-GAGCGCGCTTTGGTGT------G 412
                      **********************************   *** * *  **** *       *

consensus_6338#0      GCTTATTGACGATCTTGGCCTACAAGG-CAAACAGCAGTATCCTAACTCACAACACAAGC 447
consensus_6338#1      CCTCGCTGCTTCTGTTTGATCACAATCTCGGGCTGTGTTGGTCTGCATTGC--TGCAAAT 470
                       **   **    * ** *   ****   *   * *   *   **   *  *    ***  

consensus_6338#0      GTTACAT-TGTCAAAGATGGAGCACCA-ACACTGATTCCCTCAGATCCCATTGCGCTCAT 505
consensus_6338#1      GCTGCTTCTGTATATTTTGGATTGTGGCGCACTGGCGCTGCTGCGGCTATTTGAGGGC-T 529
                      * * * * ***  *   ****        *****   *        *   *** *  * *

consensus_6338#0      GAAAAGCACTGTTCTTTCTACAAAATCAAAGCTCAAGCTATTTCTGGAACCATTTCTCTA 565
consensus_6338#1      GGAGCACACTAGCGAGTAGTGCTCCTTGGTGCGCAGGCTGA----GGAAACTTGTGTTTG 585
                      * *   ****      *        *    ** ** ***      **** * * * * * 

consensus_6338#0      TGAGAAATCTAGCAGAAGGACCTCGGGAAAAGTGTCTGATGAACATTTAAGTGAGAGTGT 625
consensus_6338#1      TGAACGA---AATGCAAGCTGCTCACTAATGCAGACAGTTGTTCCTGCAAATG-GAGAAG 641
                      ***   *   *    ***   ***   **    * * * **  * *  ** ** ***   

consensus_6338#0      TGCAAGTTTCTTTGAACGCCACTTTGGAAAAGAGGTTGTTGATTATCTTATTGATC--CA 683
consensus_6338#1      TGTTTTCTTCTGCATTCGT-ATCCCACAACAGACGTGAACCCTTTCTGCTATGAGCATCA 700
                      **     ****     **  *      ** *** **      **       *** *  **

consensus_6338#0      TTTGTGGCTGGAACA-AGCGGAGGAGATCCTGAGTCATTATCAATTCGTCATGCATTTCC 742
consensus_6338#1      TTGAACACCGTTATGTAACTTATCATAGCCTGATTCGATTTCA-TTCACCATGA---TCT 756
                      **     * *  *   * *  *  * * ***** **  * *** ***  ****    ** 

consensus_6338#0      AGCATTATGGAATTTGGAGAATAAGTATGGCTCTGTCATTGCTGGTGCCATCTTGTCCAA 802
consensus_6338#1      ATAACTATTATACTTACCACATTAGTT--ACTTTGT-ACTACTCTTAGTAAAATAAATAA 813
                      *  * ***   * **     ** ***    ** *** * * **  *   *   *    **

consensus_6338#0      ACTATCCACTAAGGGTGATTCAGTGAAGACAGGAGGTGCTTCGCCAGGGAAAGGAAGGAA 862
consensus_6338#1      ATTATTT--TAATA---------------------------------------------- 825
                      * ***    ***                                                

consensus_6338#0      TAAACGTGTGTCATTTTCATTTCA 886
consensus_6338#1      ------------------------
                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)