Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6357 cluster # 6357       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6357#0 length = 1491 sequences # 1  
consensus_6357#1 length = 1468 sequences # 3  

consensusID : consensus_6357#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1491
fasta sequence
                              [AAACCACCAATCTCTCTCTCTCTCTCTCTTTCTCTCTCGCTCCCGGCGGAGAGGAGGAGCAGTCTCCCATCTGCGGCGGCCGGCGGCGTGCGTGCGTGCGGGTGGCTGGTGTTGTGGATTCCGTTTCCGATGGACGACGCGGTGGAGACGGCCGCCGAGATTCTGGTCAGCTTCCAGAACAGGAGGCTGGTGCGGTGGCCGGAGTGGGTTCCGCGGCCGGATGAGAAGGGCGCCGCCGCTGAGGAGAAGAAGTTGCCGGGATGGAAGGACCGGCGGAAGCGGACTTCCAAGTCCAAACCGCCGCCGGCCATTTTGGTGTGTGGCCTGGAGCTGAGGGATTCCGGCGGGGAGAAGGCGGCGTCGATTCCGGCCCCGCTCCCGCCCCCCGCGAGGAAGAAGATGTTGTTCAAGATGAAGGTCAAGGACGAGCCGACGGCGGCGCGGGGGCCGGAGACGCCGCCGGAGTACGGGGCCGGCGCGGGATCCGGCGCGAATTTCAGCCGGGATGGCGTGGCGAGGCCTCTGCCGCCACGCGCGGTGGTGAAGGCCGAGCCGACGCCGGCGGCGCGGATGCCCGAGTCGCCGCCGTACTACGTCGCGGCGGCCGGATCCGCCCCTTCCACGGCCGGCGGCGACCGGCGTCCGCGTCCTCGCCCCGTCGAGAGGGCGCACGTCAAGACGGTCCTCGCGGCGGCGAAGGAGGCCATGGAGGCGTCTAGCCCAGAGACCCCTCTGGACTACGCCGCCACCACCGGATCCGGCGCGTCCTCCAGCGGCGACGAGTCGTCGCGGAAGCGGAAGGCGGCGCCGGGGGCGGGCGGATCCGGCGGCGCCTCGTCGAGCGGCGACGAGGGGTGCAGCTCACCGGAGAAGCGGCCGTGCCTGGTCGCCGGCGGCGGCGCTCAGACCGCCGCAGCGGCTAAAGCAGAGGTGAGTCCCCCCCACTTTTTTCCCCATTTGTTTTTGGCCCTTTTACTTTTGTTTCCGTTTGGATTCAGAACTCTTGAGCTCTTTCTTGTGCCCTGAAATCTTCTTTCTTCCAGTCCCTTCCTCGTGCGATTCGCTTTTATTTTTCTCTTCAAGTTCCTTCCTCGGGCGATTTGCTTGTGATCTGTGTTCTTGCTTGTGTGATGATTCTCGCAACGATTTTTTGTTAGGAAATCAGACGACAAGTTCCCTTTTTTGACTTAAAATTCCACCTTGATTTGATTTGTGTATGGGAGATGTGCCTGCAACGATTTTTCTGACGAAATCCGTTTGCTTTTCACCTCTTTTGTTCACTTATTATAGAAAAAAATAGTCGTACTACCATAGTGTTTATCTGTTTAATCTCAACAGAAATTTAAACATTTACTTTGGACCCGTAAATTCAGCTTATTTGCCAAGATGAAGCATTTTTTAGGTCCGTTCAAAAAAGCTCTTCCTTTGTTTTTTCACTATATCATTTTAGTAGTGGTAGTTTTCCTTGTCTGTTACGATTTGTGTATTTGT]

[+] EMBL AK106281             [AAACCACCAATCTCTCTCTCTCTCTCTCTTTCTCTCTCGCTCCCGGCGGAGAGGAGGAGCAGTCTCCCATCTGCGGCGGCCGGCGGCGTGCGTGCGTGCGGGTGGCTGGTGTTGTGGATTCCGTTTCCGATGGACGACGCGGTGGAGACGGCCGCCGAGATTCTGGTCAGCTTCCAGAACAGGAGGCTGGTGCGGTGGCCGGAGTGGGTTCCGCGGCCGGATGAGAAGGGCGCCGCCGCTGAGGAGAAGAAGTTGCCGGGATGGAAGGACCGGCGGAAGCGGACTTCCAAGTCCAAACCGCCGCCGGCCATTTTGGTGTGTGGCCTGGAGCTGAGGGATTCCGGCGGGGAGAAGGCGGCGTCGATTCCGGCCCCGCTCCCGCCCCCCGCGAGGAAGAAGATGTTGTTCAAGATGAAGGTCAAGGACGAGCCGACGGCGGCGCGGGGGCCGGAGACGCCGCCGGAGTACGGGGCCGGCGCGGGATCCGGCGCGAATTTCAGCCGGGATGGCGTGGCGAGGCCTCTGCCGCCACGCGCGGTGGTGAAGGCCGAGCCGACGCCGGCGGCGCGGATGCCCGAGTCGCCGCCGTACTACGTCGCGGCGGCCGGATCCGCCCCTTCCACGGCCGGCGGCGACCGGCGTCCGCGTCCTCGCCCCGTCGAGAGGGCGCACGTCAAGACGGTCCTCGCGGCGGCGAAGGAGGCCATGGAGGCGTCTAGCCCAGAGACCCCTCTGGACTACGCCGCCACCACCGGATCCGGCGCGTCCTCCAGCGGCGACGAGTCGTCGCGGAAGCGGAAGGCGGCGCCGGGGGCGGGCGGATCCGGCGGCGCCTCGTCGAGCGGCGACGAGGGGTGCAGCTCACCGGAGAAGCGGCCGTGCCTGGTCGCCGGCGGCGGCGCTCAGACCGCCGCAGCGGCTAAAGCAGAGGTGAGTCCCCCCCACTTTTTTCCCCATTTGTTTTTGGCCCTTTTACTTTTGTTTCCGTTTGGATTCAGAACTCTTGAGCTCTTTCTTGTGCCCTGAAATCTTCTTTCTTCCAGTCCCTTCCTCGTGCGATTCGCTTTTATTTTTCTCTTCAAGTTCCTTCCTCGGGCGATTTGCTTGTGATCTGTGTTCTTGCTTGTGTGATGATTCTCGCAACGATTTTTTGTTAGGAAATCAGACGACAAGTTCCCTTTTTTGACTTAAAATTCCACCTTGATTTGATTTGTGTATGGGAGATGTGCCTGCAACGATTTTTCTGACGAAATCCGTTTGCTTTTCACCTCTTTTGTTCACTTATTATAGAAAAAAATAGTCGTACTACCATAGTGTTTATCTGTTTAATCTCAACAGAAATTTAAACATTTACTTTGGACCCGTAAATTCAGCTTATTTGCCAAGATGAAGCATTTTTTAGGTCCGTTCAAAAAAGCTCTTCCTTTGTTTTTTCACTATATCATTTTAGTAGTGGTAGTTTTCCTTGTCTGTTACGATTTGTGTATTTGT]


>consensus_6357#0 AAACCACCAATCTCTCTCTCTCTCTCTCTTTCTCTCTCGCTCCCGGCGGAGAGGAGGAGC AGTCTCCCATCTGCGGCGGCCGGCGGCGTGCGTGCGTGCGGGTGGCTGGTGTTGTGGATT CCGTTTCCGATGGACGACGCGGTGGAGACGGCCGCCGAGATTCTGGTCAGCTTCCAGAAC AGGAGGCTGGTGCGGTGGCCGGAGTGGGTTCCGCGGCCGGATGAGAAGGGCGCCGCCGCT GAGGAGAAGAAGTTGCCGGGATGGAAGGACCGGCGGAAGCGGACTTCCAAGTCCAAACCG CCGCCGGCCATTTTGGTGTGTGGCCTGGAGCTGAGGGATTCCGGCGGGGAGAAGGCGGCG TCGATTCCGGCCCCGCTCCCGCCCCCCGCGAGGAAGAAGATGTTGTTCAAGATGAAGGTC AAGGACGAGCCGACGGCGGCGCGGGGGCCGGAGACGCCGCCGGAGTACGGGGCCGGCGCG GGATCCGGCGCGAATTTCAGCCGGGATGGCGTGGCGAGGCCTCTGCCGCCACGCGCGGTG GTGAAGGCCGAGCCGACGCCGGCGGCGCGGATGCCCGAGTCGCCGCCGTACTACGTCGCG GCGGCCGGATCCGCCCCTTCCACGGCCGGCGGCGACCGGCGTCCGCGTCCTCGCCCCGTC GAGAGGGCGCACGTCAAGACGGTCCTCGCGGCGGCGAAGGAGGCCATGGAGGCGTCTAGC CCAGAGACCCCTCTGGACTACGCCGCCACCACCGGATCCGGCGCGTCCTCCAGCGGCGAC GAGTCGTCGCGGAAGCGGAAGGCGGCGCCGGGGGCGGGCGGATCCGGCGGCGCCTCGTCG AGCGGCGACGAGGGGTGCAGCTCACCGGAGAAGCGGCCGTGCCTGGTCGCCGGCGGCGGC GCTCAGACCGCCGCAGCGGCTAAAGCAGAGGTGAGTCCCCCCCACTTTTTTCCCCATTTG TTTTTGGCCCTTTTACTTTTGTTTCCGTTTGGATTCAGAACTCTTGAGCTCTTTCTTGTG CCCTGAAATCTTCTTTCTTCCAGTCCCTTCCTCGTGCGATTCGCTTTTATTTTTCTCTTC AAGTTCCTTCCTCGGGCGATTTGCTTGTGATCTGTGTTCTTGCTTGTGTGATGATTCTCG CAACGATTTTTTGTTAGGAAATCAGACGACAAGTTCCCTTTTTTGACTTAAAATTCCACC TTGATTTGATTTGTGTATGGGAGATGTGCCTGCAACGATTTTTCTGACGAAATCCGTTTG CTTTTCACCTCTTTTGTTCACTTATTATAGAAAAAAATAGTCGTACTACCATAGTGTTTA TCTGTTTAATCTCAACAGAAATTTAAACATTTACTTTGGACCCGTAAATTCAGCTTATTT GCCAAGATGAAGCATTTTTTAGGTCCGTTCAAAAAAGCTCTTCCTTTGTTTTTTCACTAT ATCATTTTAGTAGTGGTAGTTTTCCTTGTCTGTTACGATTTGTGTATTTGT



consensusID : consensus_6357#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1468
fasta sequence
                              [CTCTCGCCTCTCTCGCCTCTCCCTTTCCAAGAAACCACCAATCTCTCTCTCTCTCTCTCTTTCTCTCTCGCTCGCGGCGGAGAGGAGGAGCAGTCTCCCATCTGCGGCGGCCGGCGGCGTGCGTGCGTGCGGGTGGCTGGTGTTGTGGATTCCGTTTCCGATGGACGACGCGGTGGAGACGGCCGCCGAGATTCTGGTCAGCTTCCAGAACAGGAGGCTGGTGCGGTGGCCGGAGTGGGTTCCGCGGCCGGATGAGAAGGGCGCCGCCGCTGAGGAGAAGAAGTTGCCGGGATGGAAGGACCGGCGGAAGCGGACTTCCAAGTCCAAACCGCCGCCGGCCATTTTGGTGTGTGGCCTGGAGCTGAGGGATTCCGGCGGGGAGAAGGCGGCGTCGATTCCGGCCCCGCTCCCGCCCCCCGCGAGGAAGAAGATGTTGTTCAAGATGAAGGTCAAGGACGAGCCGACGGCGGCGCGGGGGCCGGAGACGCCGCCGGAGTACGGGGCCGGCGCGGGATCCGGCGCGAATTTCAGCCGGGATGGCGTGGCGAGGCCTCTGCCGCCACGCGCGGTGGTGAAGGCCGAGCCGACGCCGGCGGCGCGGATGCCCGAGTCGCCGCCGTACTACGTCGCGGCGGCCGGATCCGCCCCTTCCACGGCCGGCGGCGACCGGCGTCCGCGTCCTCGCCCCGTCGAGAGGGCGCACGTCAAGACGGTCCTCGCGGCGGCGAAGGAGGCCATGGAGGCGTCTAGCCCAGAGACCCCTCTGGACTACGCCGCCACCACCGGATCCGGCGCGTCCTCCAGCGGCGACGAGTCGTCGCGGAAGCGGAAGGCGGCGCCGGGGGGGGGCGGATCCGGCGGCGCCTCGTCGAGCGGCGACGAGGGGTGCAGCTCACCGGAGAAGCGGCCGTGCCTGGTCGCCGGCGGCGGCGCTCAGACCGCCGCAGCGGCTAAAGCAGAGGGGGAAAAGTTTGCGGATTCGATGAACCGTAACGAAGATGGCGTGCTTCTCTTCGACCTCAACGAATGTGTGGATAA-TGCGAAGATTGGTCCTAATGGGAGTCTTTGCTAGTGTTCATCATGCCTAGATCAATGTGGGAGTTTTTGCTAACATATCCGCGCTCCGTCGGGTAAAAAATAAACCCAAAATTGTGTACATAAAAAGGGCAAAGCCAGTAAGTAGAGCAGTTGACAAGAGCTGGAGGGCTTTGCCTTTTCTTTCTAGATTATATATTATATGAGTAGATGATAAGGTGGGCTTAGGTGGTTTCATTGAATTTGTCAGGTTAGTTTCTAGTCAGCCTTGTTCATTGCACTGCTCTTGATCATATCTTATTATTCTGCTGGCTCTCTCATTGCCCAGTGCCCTCTGCTGTTGCCTTCAGATCGGTGTAAGGCATCTCTGTTTTAATCTTCACTTCAATGTGGAACTGATACAGTGCAAGAACAATATATTTACATACATTTT]

[+] EMBL AK072238             [CTCTCGCCTCTCTCGCCTCTCCCTTTCCAAGAAACCACCAATCTCTCTCTCTCTCTCTCTTTCTCTCTCGCTCGCGGCGGAGAGGAGGAGCAGTCTCCCATCTGCGGCGGCCGGCGGCGTGCGTGCGTGCGGGTGGCTGGTGTTGTGGATTCCGTTTCCGATGGACGACGCGGTGGAGACGGCCGCCGAGATTCTGGTCAGCTTCCAGAACAGGAGGCTGGTGCGGTGGCCGGAGTGGGTTCCGCGGCCGGATGAGAAGGGCGCCGCCGCTGAGGAGAAGAAGTTGCCGGGATGGAAGGACCGGCGGAAGCGGACTTCCAAGTCCAAACCGCCGCCGGCCATTTTGGTGTGTGGCCTGGAGCTGAGGGATTCCGGCGGGGAGAAGGCGGCGTCGATTCCGGCCCCGCTCCCGCCCCCCGCGAGGAAGAAGATGTTGTTCAAGATGAAGGTCAAGGACGAGCCGACGGCGGCGCGGGGGCCGGAGACGCCGCCGGAGTACGGGGCCGGCGCGGGATCCGGCGCGAATTTCAGCCGGGATGGCGTGGCGAGGCCTCTGCCGCCACGCGCGGTGGTGAAGGCCGAGCCGACGCCGGCGGCGCGGATGCCCGAGTCGCCGCCGTACTACGTCGCGGCGGCCGGATCCGCCCCTTCCACGGCCGGCGGCGACCGGCGTCCGCGTCCTCGCCCCGTCGAGAGGGCGCACGTCAAGACGGTCCTCGCGGCGGCGAAGGAGGCCATGGAGGCGTCTAGCCCAGAGACCCCTCTGGACTACGCCGCCACCACCGGATCCGGCGCGTCCTCCAGCGGCGACGAGTCGTCGCGGAAGCGGAAGGCGGCGCCGGGGGGGGGCGGATCCGGCGGCGCCTCGTCGAGCGGCGACGAGGGGTGCAGCTCACCGGAGAAGCGGCCGTGCCTGGTCGCCGGCGGCGGCGCTCAGACCGCCGCAGCGGCTAAAGCAGAGGGGGAAAAGTTTGCGGATTCGATGAACCGTAACGAAGATGGCGTGCTTCTCTTCGACCTCAACGAATGTGTGGATAA TGCGAAGATTGGTCCTAATGGGAGTCTTTGCTAGTGTTCATCATGCCTAGATCAATGTGGGAGTTTTTGCTAACATATCCGCGCTCCGTCGGGTAAAAAATAAACCCAAAATTGTGTACATAAAAAGGGCAAAGCCAGTAAGTAGAGCAGTTGACAAGAGCTGGAGGGCTTTGCCTTTTCTTTCTAGATTATATATTATATGAGTAGATGATAAGGTGGGCTTAGGTGGTTTCATTGAATTTGTCAGGTTAGTTTCTAGTCAGCCTTGTTCATTGCACTGCTCTTGATCATATCTTATTATTCTGCTGGCTCTCTCATTGCCCAGTGCCCTCTGCTGTTGCCTTCAGATCGGTGTAAGGCATCTCTGTTTTAATCTTCACTTCAATGTGGAACTGATACAGTGCAAGAACA                   ]
[+] EMBL AK106365             [                               AAACCACCAATCTCTCTCTCTCTCTCTCTTTCTCTCTCGCTCGCGGCGGAGAGGAGGAGCAGTCTCCCATCTGCGGCGGCCGGCGGCGTGCGTGCGTGCGGGTGGCTGGTGTTGTGGATTCCGTTTCCGATGGACGACGCGGTGGAGACGGCCGCCGAGATTCTGGTCAGCTTCCAGAACAGGAGGCTGGTGCGGTGGCCGGAGTGGGTTCCGCGGCCGGATGAGAAGGGCGCCGCCGCTGAGGAGAAGAAGTTGCCGGGATGGAAGGACCGGCGGAAGCGGACTTCCAAGTCCAAACCGCCGCCGGCCATTTTGGTGTGTGGCCTGGAGCTGAGGGATTCCGGCGGGGAGAAGGCGGCGTCGATTCCGGCCCCGCTCCCGCCCCCCGCGAGGAAGAAGATGTTGTTCAAGATGAAGGTCAAGGACGAGCCGACGGCGGCGCGGGGGCCGGAGACGCCGCCGGAGTACGGGGCCGGCGCGGGATCCGGCGCGAATTTCAGCCGGGATGGCGTGGCGAGGCCTCTGCCGCCACGCGCGGTGGTGAAGGCCGAGCCGACGCCGGCGGCGCGGATGCCCGAGTCGCCGCCGTACTACGTCGCGGCGGCCGGATCCGCCCCTTCCACGGCCGGCGGCGACCGGCGTCCGCGTCCTCGCCCCGTCGAGAGGGCGCACGTCAAGACGGTCCTCGCGGCGGCGAAGGAGGCCATGGAGGCGTCTAGCCCAGAGACCCCTCTGGACTACGCCGCCACCACCGGATCCGGCGCGTCCTCCAGCGGCGACGAGTCGTCGCGGAAGCGGAAGGCGGCGCCGGGGGCGGGCGGATCCGGCGGCGCCTCGTCGAGCGGCGACGAGGGGTGCAGCTCACCGGAGAAGCGGCCGTGCCTGGTCGCCGGCGGCGGCGCTCAGACCGCCGCAGCGGCTAAAGCAGAGGGGGAAAAGTTTGCGGATTCGATGAACCGTAACGACGATGGCGTGCTTCTCTTCGACCTCAACGAATGTGTGGATAATTGCGAAGATTGGTCCTAATGGGAGTCTTTGCTAGTGTTCATCATGCCTAGATCAATGTGGGAGTTTTTGCTAACATATCCGCGCTCCGTCGGGTAAAAAATAAACCCAAAATTGTGTACATAAAAAGGGCAAAGCCAGTAAGTAGAGCAGTTGACAAGAGCTGGAGGGCTTTGCCTTTTCTTTCTAGATTATATATTATATGAGTAGATGATAAGGTGGGCTTAGGTGGTTTCATTGAATTTGTCAGGTTAGTTTCTAGTCAGCCTTGTTCATTGCACTGCTCTTGATCATATCTTATTATTCTACTGGCTCTCTCATTGCCCAGTGCCCTCTGCTGTTGCCTTCAGATCGGTGTAAGGCATCTCTGTTTTAATCTTCACTTCAATGTGGAACTGATACAGTGCAAGAACAATATATTTACATACATTTT]
[+] EMBL C93462               [                                                     TCTCTCTTTCTCTCTCGCTCGCGGCGGAGAGGAGGAGCAGTCTCCCATCTNCGGCGGCCGGCGGCGTGCGTGCGTNCGGGTGGCTGGTGTTGTGGATTCCGTTTCCNATGGACGACGCGGTGGAGACGGCCGCCGAGATTCTGGTCAGCTTCCAGAACAGGAGGCTGGTGCGGTGGCCGGAGTGGGTTCCGCGGCCGGATGANAAGGGCGCCGCCGCTGAGGAGAAGAAGTTGCCGGGATGGAAGGACCGGCGGAA NGGACTTCCAAGTCCAAACCGCCGCCGGCCATTTTNGTGTGTGGCCTGGAGCTGAGGGATTCCGGCGGGGAGAAGACGGCGTCGATTCCGGCCCCGNT CCG CCCCCGCNA GAAGAAGATGTTTTTCAAGATTAAGGTNAAGGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_6357#1 CTCTCGCCTCTCTCGCCTCTCCCTTTCCAAGAAACCACCAATCTCTCTCTCTCTCTCTCT TTCTCTCTCGCTCGCGGCGGAGAGGAGGAGCAGTCTCCCATCTGCGGCGGCCGGCGGCGT GCGTGCGTGCGGGTGGCTGGTGTTGTGGATTCCGTTTCCGATGGACGACGCGGTGGAGAC GGCCGCCGAGATTCTGGTCAGCTTCCAGAACAGGAGGCTGGTGCGGTGGCCGGAGTGGGT TCCGCGGCCGGATGAGAAGGGCGCCGCCGCTGAGGAGAAGAAGTTGCCGGGATGGAAGGA CCGGCGGAAGCGGACTTCCAAGTCCAAACCGCCGCCGGCCATTTTGGTGTGTGGCCTGGA GCTGAGGGATTCCGGCGGGGAGAAGGCGGCGTCGATTCCGGCCCCGCTCCCGCCCCCCGC GAGGAAGAAGATGTTGTTCAAGATGAAGGTCAAGGACGAGCCGACGGCGGCGCGGGGGCC GGAGACGCCGCCGGAGTACGGGGCCGGCGCGGGATCCGGCGCGAATTTCAGCCGGGATGG CGTGGCGAGGCCTCTGCCGCCACGCGCGGTGGTGAAGGCCGAGCCGACGCCGGCGGCGCG GATGCCCGAGTCGCCGCCGTACTACGTCGCGGCGGCCGGATCCGCCCCTTCCACGGCCGG CGGCGACCGGCGTCCGCGTCCTCGCCCCGTCGAGAGGGCGCACGTCAAGACGGTCCTCGC GGCGGCGAAGGAGGCCATGGAGGCGTCTAGCCCAGAGACCCCTCTGGACTACGCCGCCAC CACCGGATCCGGCGCGTCCTCCAGCGGCGACGAGTCGTCGCGGAAGCGGAAGGCGGCGCC GGGGGGGGGCGGATCCGGCGGCGCCTCGTCGAGCGGCGACGAGGGGTGCAGCTCACCGGA GAAGCGGCCGTGCCTGGTCGCCGGCGGCGGCGCTCAGACCGCCGCAGCGGCTAAAGCAGA GGGGGAAAAGTTTGCGGATTCGATGAACCGTAACGAAGATGGCGTGCTTCTCTTCGACCT CAACGAATGTGTGGATAATGCGAAGATTGGTCCTAATGGGAGTCTTTGCTAGTGTTCATC ATGCCTAGATCAATGTGGGAGTTTTTGCTAACATATCCGCGCTCCGTCGGGTAAAAAATA AACCCAAAATTGTGTACATAAAAAGGGCAAAGCCAGTAAGTAGAGCAGTTGACAAGAGCT GGAGGGCTTTGCCTTTTCTTTCTAGATTATATATTATATGAGTAGATGATAAGGTGGGCT TAGGTGGTTTCATTGAATTTGTCAGGTTAGTTTCTAGTCAGCCTTGTTCATTGCACTGCT CTTGATCATATCTTATTATTCTGCTGGCTCTCTCATTGCCCAGTGCCCTCTGCTGTTGCC TTCAGATCGGTGTAAGGCATCTCTGTTTTAATCTTCACTTCAATGTGGAACTGATACAGT GCAAGAACAATATATTTACATACATTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6357#0      -------------------------------AAACCACCAATCTCTCTCTCTCTCTCTCT 29
consensus_6357#1      CTCTCGCCTCTCTCGCCTCTCCCTTTCCAAGAAACCACCAATCTCTCTCTCTCTCTCTCT 60
                                                     *****************************

consensus_6357#0      TTCTCTCTCGCTCCCGGCGGAGAGGAGGAGCAGTCTCCCATCTGCGGCGGCCGGCGGCGT 89
consensus_6357#1      TTCTCTCTCGCTCGCGGCGGAGAGGAGGAGCAGTCTCCCATCTGCGGCGGCCGGCGGCGT 120
                      ************* **********************************************

consensus_6357#0      GCGTGCGTGCGGGTGGCTGGTGTTGTGGATTCCGTTTCCGATGGACGACGCGGTGGAGAC 149
consensus_6357#1      GCGTGCGTGCGGGTGGCTGGTGTTGTGGATTCCGTTTCCGATGGACGACGCGGTGGAGAC 180
                      ************************************************************

consensus_6357#0      GGCCGCCGAGATTCTGGTCAGCTTCCAGAACAGGAGGCTGGTGCGGTGGCCGGAGTGGGT 209
consensus_6357#1      GGCCGCCGAGATTCTGGTCAGCTTCCAGAACAGGAGGCTGGTGCGGTGGCCGGAGTGGGT 240
                      ************************************************************

consensus_6357#0      TCCGCGGCCGGATGAGAAGGGCGCCGCCGCTGAGGAGAAGAAGTTGCCGGGATGGAAGGA 269
consensus_6357#1      TCCGCGGCCGGATGAGAAGGGCGCCGCCGCTGAGGAGAAGAAGTTGCCGGGATGGAAGGA 300
                      ************************************************************

consensus_6357#0      CCGGCGGAAGCGGACTTCCAAGTCCAAACCGCCGCCGGCCATTTTGGTGTGTGGCCTGGA 329
consensus_6357#1      CCGGCGGAAGCGGACTTCCAAGTCCAAACCGCCGCCGGCCATTTTGGTGTGTGGCCTGGA 360
                      ************************************************************

consensus_6357#0      GCTGAGGGATTCCGGCGGGGAGAAGGCGGCGTCGATTCCGGCCCCGCTCCCGCCCCCCGC 389
consensus_6357#1      GCTGAGGGATTCCGGCGGGGAGAAGGCGGCGTCGATTCCGGCCCCGCTCCCGCCCCCCGC 420
                      ************************************************************

consensus_6357#0      GAGGAAGAAGATGTTGTTCAAGATGAAGGTCAAGGACGAGCCGACGGCGGCGCGGGGGCC 449
consensus_6357#1      GAGGAAGAAGATGTTGTTCAAGATGAAGGTCAAGGACGAGCCGACGGCGGCGCGGGGGCC 480
                      ************************************************************

consensus_6357#0      GGAGACGCCGCCGGAGTACGGGGCCGGCGCGGGATCCGGCGCGAATTTCAGCCGGGATGG 509
consensus_6357#1      GGAGACGCCGCCGGAGTACGGGGCCGGCGCGGGATCCGGCGCGAATTTCAGCCGGGATGG 540
                      ************************************************************

consensus_6357#0      CGTGGCGAGGCCTCTGCCGCCACGCGCGGTGGTGAAGGCCGAGCCGACGCCGGCGGCGCG 569
consensus_6357#1      CGTGGCGAGGCCTCTGCCGCCACGCGCGGTGGTGAAGGCCGAGCCGACGCCGGCGGCGCG 600
                      ************************************************************

consensus_6357#0      GATGCCCGAGTCGCCGCCGTACTACGTCGCGGCGGCCGGATCCGCCCCTTCCACGGCCGG 629
consensus_6357#1      GATGCCCGAGTCGCCGCCGTACTACGTCGCGGCGGCCGGATCCGCCCCTTCCACGGCCGG 660
                      ************************************************************

consensus_6357#0      CGGCGACCGGCGTCCGCGTCCTCGCCCCGTCGAGAGGGCGCACGTCAAGACGGTCCTCGC 689
consensus_6357#1      CGGCGACCGGCGTCCGCGTCCTCGCCCCGTCGAGAGGGCGCACGTCAAGACGGTCCTCGC 720
                      ************************************************************

consensus_6357#0      GGCGGCGAAGGAGGCCATGGAGGCGTCTAGCCCAGAGACCCCTCTGGACTACGCCGCCAC 749
consensus_6357#1      GGCGGCGAAGGAGGCCATGGAGGCGTCTAGCCCAGAGACCCCTCTGGACTACGCCGCCAC 780
                      ************************************************************

consensus_6357#0      CACCGGATCCGGCGCGTCCTCCAGCGGCGACGAGTCGTCGCGGAAGCGGAAGGCGGCGCC 809
consensus_6357#1      CACCGGATCCGGCGCGTCCTCCAGCGGCGACGAGTCGTCGCGGAAGCGGAAGGCGGCGCC 840
                      ************************************************************

consensus_6357#0      GGGGGCGGGCGGATCCGGCGGCGCCTCGTCGAGCGGCGACGAGGGGTGCAGCTCACCGGA 869
consensus_6357#1      GGGGGGGGGCGGATCCGGCGGCGCCTCGTCGAGCGGCGACGAGGGGTGCAGCTCACCGGA 900
                      ***** ******************************************************

consensus_6357#0      GAAGCGGCCGTGCCTGGTCGCCGGCGGCGGCGCTCAGACCGCCGCAGCGGCTAAAGCAGA 929
consensus_6357#1      GAAGCGGCCGTGCCTGGTCGCCGGCGGCGGCGCTCAGACCGCCGCAGCGGCTAAAGCAGA 960
                      ************************************************************

consensus_6357#0      GGTG---AGTCCCCCCCACTTTTTTCCCCATT-TGTTTTTGGCCCTTTTACTTTTGTTTC 985
consensus_6357#1      GGGGGAAAAGTTTGCGGATTCGATGAACCGTAACGAAGATGGCGTGCTTCTCTTCGACCT 1020
                      ** *   *      *  * *   *   ** *   *    ****    **   ** *    

consensus_6357#0      CGTTTGGATTCAGAACTCTTGAGCTCTTTCTTGTGCCCTGAAATCTTCTTTCTTCCAGTC 1045
consensus_6357#1      CAAC-GAATGTGTGGATAATGCGAAGATTGGTCCTAATGGGAGTCTTTGCTAGTGTTCAT 1079
                      *    * **       *  ** *    **  *       * * ****   *  *      

consensus_6357#0      CCTTCCTCGTGCGATTCG----CTTTTATTTTTCTCTTCAAGTTCCTTCCTCGGGCGATT 1101
consensus_6357#1      CATGCCTAGATCAATGTGGGAGTTTTTGCTAACATATCCGCGCTCCGTCGGGTAAAAAAT 1139
                      * * *** *  * **  *     ****  *    * * *  * *** **        * *

consensus_6357#0      TGCTTGTGATCTGTGTTCTTGCTTGTGTGATGATTCTCGCAACGATTTTTTGTTAGGAAA 1161
consensus_6357#1      AAACCCAAAATTGTGTACATAAAAAGGGCAAAGCCAGTAAGTAGAGCAGTTGACAAGAG- 1198
                              *  ***** * *      *  *             **    ***  * **  

consensus_6357#0      TCAGACGACAAGTTCCCTTTTTTGACTTAAAATTCCACCTTGATTTGATTTGTGTATGGG 1221
consensus_6357#1      CTGGAGGGC--TTTGCCTTTTCT--TTCTAGATTATATATT-ATATGAGTAGATGATA-- 1251
                         ** * *   ** ****** *   *  * ***  *  ** ** *** * *   **   

consensus_6357#0      AGATGTGCCTGCAACGATTTTTCTGACGAAATCCGTTTGCTTTTCA-CCTCTTTTGTTCA 1280
consensus_6357#1      AGGTGGGCTTA-GGTGGTTTCATTGAATTTGTCAGGTTAGTTTCTAGTCAGCCTTGTTCA 1310
                      ** ** ** *     * ***   ***     ** * **  ***  *  *    *******

consensus_6357#0      CT-TATTATAGAAAAAAATAGTCGTACTACCATAGTGTTTATCTGTTTAATCTCAACAGA 1339
consensus_6357#1      TTGCACTGCTCTTGATCATA-TCTTATTATTCTGCTGGCTCTCTCATTG--CCCAGTGCC 1367
                       *  * *       *  *** ** ** **   *  **  * ***  **   * **     

consensus_6357#0      AATTTAAACATTTACTTTGGACCCGTAAATTCAGCTTATTTGCCAAGATGAAGCATTTTT 1399
consensus_6357#1      --CTCTGCTGTTGCCTTCAGATCGGTGTAAGGCATCTCTGTTTTAATCTTCACTTCAATG 1425
                         *      **  ***  ** * **  *       * * *   **  *  *      * 

consensus_6357#0      TAGGTCCGTTCAAAAAAGCTCTTCCTTTGTTTTTTCACTATATCATTTTAGTAGTGGTAG 1459
consensus_6357#1      TGGAACTGAT--ACAGTGCAAGAACAATATATTTACA-TACATTTT-------------- 1468
                      * *  * * *  * *  **     *  * * *** ** ** **  *              

consensus_6357#0      TTTTCCTTGTCTGTTACGATTTGTGTATTTGT 1491
consensus_6357#1      --------------------------------
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)