These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 360 fasta sequence [GCGGTAGAGTTTGCTAGGATCGATTCAGCAATGGCAGCGGTAGACGAGCACTAGTCCTCGGNGCCGTCGTCGTCTGNGCCGCCGTCGTGATGGCTGTCACCGCCGCGGCGGACGGCGAGGCGGCGGCGGCGGTCGTCGTCGGCTTGGCCAAGTGCGGTGGCTGCTCCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTGGCGATCAAGTGCAGGAACGGCGACGGCGAGTACGAGAGCAAGG-CCGTCGGCGACCTCGACGGCGACGNCGCCTTCAGCGTNCCCCTCGCCGCCGACGACCTTCACGGCGCCGCNACTTCTTTTCGCAATTCANAACGCGGAGANAACA] [+] EMBL AU197328 [GCGGTAGAGTTTGCTAGGATCGATTCAGCAATGGCAGCGGTAGACGAGCACTAGTCCTCGGNGCCGTCGTCGTCTGNGCCGCCGTCGTGATGGCTGTCACCGCCGCGGCGGACGGCGAGGCGGCGGCGGCGGTCGTCGTCGGCTTGGCCAAGTGCGGTGGCTGCTCCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTGGCGATCAAGTGCAGGAACGGCGACGGCGAGTACGAGAGCAAGG CCGTCGGCGACCTCGACGGCGACGNCGCCTTCAGCGTNCCCCTCGCCGCCGACGACCTTCACGGCGCCG ] [+] EMBL C73951 [ TTTGCTAGGATCGATTCAGCAATGGCAGCGGTANACGAGCACTAGTCCTCGGCGCCGTCGTCGTCTNCGCCGCCGTCGTGATGGCTGTCACCGCCGCGGCGGACGGCGAGGCGGCGGCGGCGGTCGTCGTCGGCTTGGCCAAGTGCGGTGGCTGCTCCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTGGCGATCAAGTGCAGGAACGGCGACGGCGAGTACGAGAGCAAGGCCCGTCGGCGACCTCGACGGCGACGGCGCCTTCAGCGTGCCCCTCGCCGCCGACGACCTTCACGGCGCCGCNACTTCTTTTCGCAATTCANAACGCGGAGANAACA] consensusID : consensus_6372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 353 fasta sequence [CTAGCCTCTTGCCACATAGTCCAAATAACAACAGAGTTTGAGGATTGATTCAGCAATGGCAGATGTAGCACGAGCGCTACTCTTCGCCGCCCTCGTGATGGCTGTCACCGCCGCTGCGAACGGCGAGGCGGCGGCGATCGTCGTCGGCCAGGCCAAGTGCGGCGAGTGCACCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTGGCGATCAAGTGCAAGAACAGCGACGGTGTGTACGAGAGCAAGGCCATCGGCGACC-TCGACGGCGACGGCGCC-TTCAGCGTGCCCCT-CGCCGCTGACGACTTCCACGGCGCCGCGACTTGCTTCGCGANTTGCACAG] [+] EMBL AU065656 [CTAGCCTCTTGCCACATAGTCCAAATAACAACAGAGTTTGAGGATTGATTCAGCAATGGCAGATGTAGCACGAGCGCTACTCTTCGCCGCCCTCGTGATGGCTGTCACCGCCGCTGCGAACGGCGAGGCGGCGGCGATCGTCGTCGGCCAGGCCAAGTGCGGCGAGTGCACCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTGGCGATCAAGTGCAAGAACAGCGACGGTGTGTACGAGAGCAAGGCCATCGGCGACC TCGACGGCGACGGCGCC TTCAGCGTGCCCCT CGCCGCTGACGACTTCCACGGCGCCGCGACTTGCTTCGCGANTTGCACAG] [+] EMBL C91892 [ CACATAGTCCAAATAACAACAGAGTTTGAGGATTGATTCAGCAATGGCAGATGTAGCACGAGCGCTACTCTTCGCCGCCCTCGTGATGGCTGTCACCGCCGCTGCGGACGGCGAGGCGGCGGCGATCGTCGTCGGCCAGGCCAAGTGCGGCGAGTGCACCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTGGCGATCAAGTGCAAGAACAGCGACGGTGTGTACGAGANCAAGGNCATCGGCGACCTTGGANGGCGACGGCGCCTTTCAGCGTGCCCCTNCGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6372#0 ---------------------------GCGGTAGAGTTTGCTAGGATCGATTCAGCAATG 33 consensus_6372#1 CTAGCCTCTTGCCACATAGTCCAAATAACAACAGAGTTTG--AGGATTGATTCAGCAATG 58 * ******** ***** ************ consensus_6372#0 GCAGCGGTAG-ACGAGCACTAGTCCTCGGNGCCGTCGTCGTCTGNGCCGCCGTCGTGATG 92 consensus_6372#1 GCAGATGTAGCACGAGCGCTACTCTTCG------------------CCGCCCTCGTGATG 100 **** **** ****** *** ** *** ***** ******** consensus_6372#0 GCTGTCACCGCCGCGGCGGACGGCGAGGCGGCGGCGGCGGTCGTCGTCGGCTTGGCCAAG 152 consensus_6372#1 GCTGTCACCGCCGCTGCGAACGGCGAGGCGGCGGCGA---TCGTCGTCGGCCAGGCCAAG 157 ************** *** ***************** *********** ******* consensus_6372#0 TGCGGTGGCTGCTCCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTG 212 consensus_6372#1 TGCGGCGAGTGCACCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTG 217 ***** * *** *********************************************** consensus_6372#0 GCGATCAAGTGCAGGAACGGCGACGGCGAGTACGAGAGCAAGGCCGTCGGCGACCTCGAC 272 consensus_6372#1 GCGATCAAGTGCAAGAACAGCGACGGTGTGTACGAGAGCAAGGCCATCGGCGACCTCGAC 277 ************* **** ******* * **************** ************** consensus_6372#0 GGCGACGNCGCCTTCAGCGTNCCCCTCGCCGCCGACGACCTTCACGGCGCCGCNACTTCT 332 consensus_6372#1 GGCGACGGCGCCTTCAGCGTGCCCCTCGCCGCTGACGACTTCCACGGCGCCGCGACTTGC 337 ******* ************ *********** ****** * *********** **** consensus_6372#0 TTTCGCAATTCANAACGCGGAGANAACA 360 consensus_6372#1 TT-CGCGANTTGCACAG----------- 353 ** *** * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||