These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6399#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 842 fasta sequence [TGGCGGCGGCGGCGGCGGCAAGAGCTGCAGCGCGTGCAAGGTGGAGATGCAGCCGTGGCACTTCTGGCGGAAGTACGGGGCGAAGCAGTTCCAGGTGGACGGCAACGCCATCGACGTGGTGTGGGACCTGAGGAGCGCGAGGTTCTCCGATGGGCCGGAGCCGCTGTCCGACTACTACGTCGCGGTGGTCGCCGGCGAGGAGGTCGTCCTCCTCCTCGGCAACCTCAAGAAGGACGCGTTCCGGCGGACGGGGTCACGGCCGTCGCTGCAGGACGCGGTGCTGGTGTGCAAGAAGGAGCACGTCTTCAGCAAGAAGAGGTTCGTGACCAAGGCCAGGTTCAGCGACAGGGGGAAGCTGCACGACATCAGCATCGAGTGCAGCAGCAGCAACCTCACCGGCGGCACGGACGTCGACATGGCGATCAAGATCGACGGCTGCGTCAGCGTCCTCGTCAGGCACCTCCAGTGGAAGTTCAGAGGCAACGAGTGCATCTCCATCAACAAGCTCAAGGTGCAGGTGTACTGGGACGCCCATGACTGGCTCTTCGGCACAGGGATGAGGCATGCCTTGTTCATCTTCAAGCCCGAGCCGCCGTCGCCGTCGCCGCCGGGAGCGAGCTCTGAATTCAGCACCGATGAATATTCAGATTTCTGCCTGTTTCTGTACGCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACG-TTTTTTTTTTTTTAACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGAAGATAGAAGAAGAAGAAGAGGGAAGAAATTATTGATGCCAAAAAAAAAAAAAAAAAAACTCCAGA] [+] EMBL AK068178 [TGGCGGCGGCGGCGGCGGCAAGAGCTGCAGCGCGTGCAAGGTGGAGATGCAGCCGTGGCACTTCTGGCGGAAGTACGGGGCGAAGCAGTTCCAGGTGGACGGCAACGCCATCGACGTGGTGTGGGACCTGAGGAGCGCGAGGTTCTCCGATGGGCCGGAGCCGCTGTCCGACTACTACGTCGCGGTGGTCGCCGGCGAGGAGGTCGTCCTCCTCCTCGGCAACCTCAAGAAGGACGCGTTCCGGCGGACGGGGTCACGGCCGTCGCTGCAGGACGCGGTGCTGGTGTGCAAGAAGGAGCACGTCTTCAGCAAGAAGAGGTTCGTGACCAAGGCCAGGTTCAGCGACAGGGGGAAGCTGCACGACATCAGCATCGAGTGCAGCAGCAGCAACCTCACCGGCGGCACGGACGTCGACATGGCGATCAAGATCGACGGCTGCGTCAGCGTCCTCGTCAGGCACCTCCAGTGGAAGTTCAGAGGCAACGAGTGCATCTCCATCAACAAGCTCAAGGTGCAGGTGTACTGGGACGCCCATGACTGGCTCTTCGGCACAGGGATGAGGCATGCCTTGTTCATCTTCAAGCCCGAGCCGCCGTCGCCGTCGCCGCCGGGAGCGAGCTCTGAATTCAGCACCGATGAATATTCAGATTTCTGCCTGTTTCTGTACGCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACG TTTTTTTTTTTTTAACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGAAGATAGAAGAAGAAGAAGAGGGAA ] [-] EMBL CB658532 [ TGGACGGCAACGCCATCGACGTGGTGTGGGACCTGAGGAGCGCGAGGTTCTCCGATGAGCCGGAGCCGCTGTCCGACTACTACGTCGCGGTGGTCGCCGGCGAGGAGGTCGTCCTCCTCCTCGGCAACCTCAAGAAGGACGCGTTCCGGCGGACGGGGTCACGGCCGTCGCTGCAGGACGCGGTGCTGGTGTGCAAGAAGGAGCACGTCTTCAGCAAGAAGAGGTTCGTGACCAAGGCCAGGTTCAGCGACAGGGGGAAGCTGCACGACATCAGCATCGAGTGCAGCAGCAGCAACCTCACCGGCGGCACGGACGTCGACATGGCGATCAAGATCGACGGCTGCGTCAGCGTCCTCGTCAGGCACCTCCAGTGGAAGTTCAGAGGCAACGAGTGCATCTCCATCAACAAGCTCAAGGTGCAGGTGTACTGGGACGCCCATGACTGGCTCTTCGGCACAGGGATGAGGCATGCCTTGTTCATCTTCAAGCCCGAGCCGCCGTCGCCGTCGCCGCCGGGAGCGAGCTCTGAATTCAGCACCGATGAATATTCAGATTTCTGCCTGTTTCTGTACGCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACG TTTTTTTTTTTTTAACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGAAGATAGAAGAAGAAGAAGAGGGAAGAAATT ] [-] EMBL CF326714 [ GCGGACGGGGTCACGGCCGTCGCTGCAGGACGCGGTGCTGGTGTGCAAGAAGGAGCACGTCTTCAGCAAGAAGAGGTTCGTGACCAAGGCCAGGTTCAGCGACAGGGGGAAGCTGCACGACATCAGCATCGAGTGCAGCAGCAGCAACCTCACCGGCGGCACGGACGTCGACATGGCGATCAAGATCGACGGCTGCGTCAGCGTCCTCGTCAGGCACCTCCAGTGGAAGTTCAGAGGCAACGAGTGCATCTCCATCAACAAGCTCAAGGTGCAGGTGTACTGGGACGCCCATGACTGGCTCTTCGGCACAGGGATGAGGCATGCCTTGTTCATCTTCAAGCCCGAGCCGCCGTCGCCGTCGCCGCCGGGAGCGAGCTCTGAATTCAGCACCGATGAATATTCAGATTTCTGCCTGTTTCTGTACGCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACGTTTTTTTTTTTTTTAACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGAAGATAGAAGAAGAAGAAGAGGGAAGAAATTATTGATGCCAAAAAAAAAAAAAAAAAAACTCCAGA] consensusID : consensus_6399#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 198 fasta sequence [AGCGAGNTNTGAATTCAGCNCCGATGAATATTCAGATTTCTGCCTGTTTCTGTACNCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACGTTTTTTTTTTTTAACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGNTGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU078401 [AGCGAGNTNTGAATTCAGCNCCGATGAATATTCAGATTTCTGCCTGTTTCTGTACNCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACGTTTTTTTTTTTTAACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGNTGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6399#0 TGGCGGCGGCGGCGGCGGCAAGAGCTGCAGCGCGTGCAAGGTGGAGATGCAGCCGTGGCA 60 consensus_6399#1 ------------------------------------------------------------ consensus_6399#0 CTTCTGGCGGAAGTACGGGGCGAAGCAGTTCCAGGTGGACGGCAACGCCATCGACGTGGT 120 consensus_6399#1 ------------------------------------------------------------ consensus_6399#0 GTGGGACCTGAGGAGCGCGAGGTTCTCCGATGGGCCGGAGCCGCTGTCCGACTACTACGT 180 consensus_6399#1 ------------------------------------------------------------ consensus_6399#0 CGCGGTGGTCGCCGGCGAGGAGGTCGTCCTCCTCCTCGGCAACCTCAAGAAGGACGCGTT 240 consensus_6399#1 ------------------------------------------------------------ consensus_6399#0 CCGGCGGACGGGGTCACGGCCGTCGCTGCAGGACGCGGTGCTGGTGTGCAAGAAGGAGCA 300 consensus_6399#1 ------------------------------------------------------------ consensus_6399#0 CGTCTTCAGCAAGAAGAGGTTCGTGACCAAGGCCAGGTTCAGCGACAGGGGGAAGCTGCA 360 consensus_6399#1 ------------------------------------------------------------ consensus_6399#0 CGACATCAGCATCGAGTGCAGCAGCAGCAACCTCACCGGCGGCACGGACGTCGACATGGC 420 consensus_6399#1 ------------------------------------------------------------ consensus_6399#0 GATCAAGATCGACGGCTGCGTCAGCGTCCTCGTCAGGCACCTCCAGTGGAAGTTCAGAGG 480 consensus_6399#1 ------------------------------------------------------------ consensus_6399#0 CAACGAGTGCATCTCCATCAACAAGCTCAAGGTGCAGGTGTACTGGGACGCCCATGACTG 540 consensus_6399#1 ------------------------------------------------------------ consensus_6399#0 GCTCTTCGGCACAGGGATGAGGCATGCCTTGTTCATCTTCAAGCCCGAGCCGCCGTCGCC 600 consensus_6399#1 ------------------------------------------------------------ consensus_6399#0 GTCGCCGCCGGGAGCGAGCTCTGAATTCAGCACCGATGAATATTCAGATTTCTGCCTGTT 660 consensus_6399#1 ------------AGCGAGNTNTGAATTCAGCNCCGATGAATATTCAGATTTCTGCCTGTT 48 ****** * ********** **************************** consensus_6399#0 TCTGTACGCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACG 720 consensus_6399#1 TCTGTACNCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACG 108 ******* **************************************************** consensus_6399#0 TTTTTTTTTTTTTAACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGAAGA 780 consensus_6399#1 TTTTTTTTTTTT-AACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGNTGG 167 ************ ******************************************* * consensus_6399#0 TAGAAGAAGAAGAAGAGGGAAGAAATTATTGATGCCAAAAAAAAAAAAAAAAAAACTCCA 840 consensus_6399#1 TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------------- 198 * ** ** ** ** * ** *** * consensus_6399#0 GA 842 consensus_6399#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||