These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 697 fasta sequence [TTAGATTTTGCCTGCATCCTGAAAGCTGCTCCTTTGCTTGAAATACTGGAATTGCATATGTGGATGCCCTATGATAACCAACATTACTGTGAAGATCATGGTGTTCTTCGAAGTCTCCCCAATCACGCTCACTCCAATCTCAAGCTCGCCTATGTTACTGGATTTTACGGCATGAAAGATCAGTTGGAGCTTTTACGCCATATCCTAATAAATTCTGTCATGCTCAATGCAATGAAGATAGATCCAAGGCCGGTTGTCGCTGTTCCCCATGGAACGGTGATGTTATGTACTGAAGGGCTTAATTGTTTGAATGGATATAGAGTTGCCATGGAATATCTTAGCAAAGCAGACCACCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGATGTTCAAAAGCGTGAAATTTATGCGATTATGAAGGATCGTTGGATTCAAGAGCCGAAAGCTATGCTAAGCTATTTCTGATCATATCATCTGCAACCCTTTTCAAGAACACAGTCAAGCTTGCTTGGGAGAAACTAGTT-GATATTGTCAATTATGCAAATTAAAT-GGAGAAGTGAGAGGATGTTGTAAAATTGGAGATATCTTTATAGCTAAACTACTGT-AATAACGTTTCT-GGATATATATTTTTATGAGTGAATTTCA-TTTTGGGCGTTTAAAAAAAAAAAAAAAAAAAAAAAAAGCGGNCGCC] [+] EMBL CB096770 [TTAGATTTTGCCTGCATCCTGAAAGCTGCTCCTTTGCTTGAAATACTGGAATTGCATATGTGGATGCCCTATGATAACCAACATTACTGTGAAGATCATGGTGTTCTTCGAAGTCTCCCCAATCACGCTCACTCCAATCTCAAGCTCGCCTATGTTACTGGATTTTACGGCATGAAAGATCAGTTGGAGCTTTTACGCCATATCCTAATAAATTCTGTCATGCTCAATGCAATGAAGATAGATCCAAGGCCGGTTGTCGCTGTTCCCCATGGAACGGTGATGTTATGTACTGAAGGGCTTAATTGTTTGAATGGATATAGAGTTGCCATGGAATATCTTAGCAAAGCAGACCACCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGATGTTCAAAAGCGTGAAATTTATGCGATTATGAAGGATCGTTGGATTCAAGAGCCGAAAGCTATGCTAAGCTATTTCTGATCATATCATCTGCAACCCTTTTCAAGAACACAGTCAAGCTTGCTTGGGAGAAACTAGTTGGATATTGTCAATTATGCAAATTAAATGGGAGAAGTGAGAGGATGTTGCAAAATTGGAGATATCTTTATAGCTAAACTACTGTAAATAACGGTTCT GGATATATATTTTTATGAGTGAATTTCATTTTTGGGCGNTTAAAAAAAAAAAAAAAAAAAAAAAAAGCGGNCGCC] [-] EMBL CF328092 [ GCTCACTCCAATCTCAAGCTCGCCTATGTTACTGGATTTTACGGCATGAAAGATCAGTTGGAGCTTTTACGCCATATCCTAATAAATTCTGTCATGCTCAATGCAATGAAGATAGATCCAAGGCCGGTTGTCGCTGTTCCCCATGGAACGGTGATGTTATGTACTGAAGGGCTTAATTGTTTGAATGGATATAGAGTTGCCATGGAATATCTTAGCAAAGCAGACCCCCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGATGTTCAAAAGCGTGAAATTTATGCGATTATGAAGGATCGTTGGATTCAAGAGCCGAAAGCTATGCTAAGCTATTTCTGATCATATCATCTGCAACCCTTTTCAAGAACACAGTCAAGCTTGCTTGGGAGAAACTAGTT GATATTGTCAATTATGCAAATTAAAT GGAGAAGTGAGAGGATGTTGTAAAATTGGAGATATCTTTATAGCTAAACTACTGT AATAACGTTTCT GGATATATATTTTTATGAGTGAATTTCA TTTTGGGCGTTTAAAAAAAAAAAAAA ] [+] EMBL AU163066 [ CTTAGCAAAGCAGACCACCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGATGTTCAAAAGCGTGAAATTTATGCGATTATNAAGGATCGTTGGATTCAAGAGCCGAAAGCTATGCTAAGCTATTTCTGATCATATCATCTGCAACCCTTTTCAAGAACACAGTCAAGCTTGCTTGGGAGAAACTAGTT GATATTGTCAATTATGCAAATTAAAT GGAGAAGTGAGAGGATGTTGTAAAATTGGAGATATCTTTATAGCTAAACTACTGT AATAACGTTTCTGGGATATATATTTTTATGAGTGAATTTCA TTTTGGGCGTTTAAA ] consensusID : consensus_6422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [TAGGACCAGCCAAGGGGAGGCTGATATGTTGAGTTTGGCGTGCATCCTGAAAGTTGGTCCTTTGCTTGAAATCCGGGAATTGCATATGTGGATGCCCTCTGATACCCAACCCTGCTGTGAAGATCATGGTGTTCTTTGAAGTCTCCCCAATCACGCTCACTCCAATCTCAAGCTCGCCTATGTTACTGGATTTTACGGCATGAAAGATCAGTTGGAGCTTTTACGCCATATCCTAATAAACTCTGTCATGCTCAATGCAATGAAGATAGATCCAAGGCCGGTTGTCGCTGTTCCCCATGGAACGGTGATGTTATGTACTGAAGGGCTTAATTGTTTGAATGGATATAGAGTTGCCATGGAATATTTTAGCAAAGCAGACCCCCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGATGTTCAAAAGCGTGAAATTTATGCGATTATGAAGGATCGTTGGATTCAAGAGCCGAAAGCTATGCTAAGCTATTTCTGATCATATCATCCGCAACCCTTTTCAAGAACACAGTCAAGCTTGCTTGGGAGAAACTAGTTGATATTGTCAATTATGCAAATTAAATGGAGAAGTGAGAGGATGTTGTAAAATTGGAGATATCTTTATAGCTAAACTACTGTAATAACGTTTCTGGATATATATTTTTTTGAGTGAATTTCCAAAAAAAAAAAAA] [-] EMBL CA760152 [TAGGACCAGCCAAGGGGAGGCTGATATGTTGAGTTTGGCGTGCATCCTGAAAGTTGGTCCTTTGCTTGAAATCCGGGAATTGCATATGTGGATGCCCTCTGATACCCAACCCTGCTGTGAAGATCATGGTGTTCTTTGAAGTCTCCCCAATCACGCTCACTCCAATCTCAAGCTCGCCTATGTTACTGGATTTTACGGCATGAAAGATCAGTTGGAGCTTTTACGCCATATCCTAATAAACTCTGTCATGCTCAATGCAATGAAGATAGATCCAAGGCCGGTTGTCGCTGTTCCCCATGGAACGGTGATGTTATGTACTGAAGGGCTTAATTGTTTGAATGGATATAGAGTTGCCATGGAATATTTTAGCAAAGCAGACCCCCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGATGTTCAAAAGCGTGAAATTTATGCGATTATGAAGGATCGTTGGATTCAAGAGCCGAAAGCTATGCTAAGCTATTTCTGATCATATCATCCGCAACCCTTTTCAAGAACACAGTCAAGCTTGCTTGGGAGAAACTAGTTGATATTGTCAATTATGCAAATTAAATGGAGAAGTGAGAGGATGTTGTAAAATTGGAGATATCTTTATAGCTAAACTACTGTAATAACGTTTCTGGATATATATTTTTTTGAGTGAATTTCCAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6422#0 ----------------------------TTAGATTTTGCCTGCATCCTGAAAGCTGCTCC 32 consensus_6422#1 TAGGACCAGCCAAGGGGAGGCTGATATGTTGAGTTTGGCGTGCATCCTGAAAGTTGGTCC 60 ** *** ** ************* ** *** consensus_6422#0 TTTGCTTGAAATACTGGAATTGCATATGTGGATGCCCTATGATAACCAACATTACTGTGA 92 consensus_6422#1 TTTGCTTGAAATCCGGGAATTGCATATGTGGATGCCCTCTGATACCCAACCCTGCTGTGA 120 ************ * *********************** ***** ***** * ****** consensus_6422#0 AGATCATGGTGTTCTTCGAAGTCTCCCCAATCACGCTCACTCCAATCTCAAGCTCGCCTA 152 consensus_6422#1 AGATCATGGTGTTCTTTGAAGTCTCCCCAATCACGCTCACTCCAATCTCAAGCTCGCCTA 180 **************** ******************************************* consensus_6422#0 TGTTACTGGATTTTACGGCATGAAAGATCAGTTGGAGCTTTTACGCCATATCCTAATAAA 212 consensus_6422#1 TGTTACTGGATTTTACGGCATGAAAGATCAGTTGGAGCTTTTACGCCATATCCTAATAAA 240 ************************************************************ consensus_6422#0 TTCTGTCATGCTCAATGCAATGAAGATAGATCCAAGGCCGGTTGTCGCTGTTCCCCATGG 272 consensus_6422#1 CTCTGTCATGCTCAATGCAATGAAGATAGATCCAAGGCCGGTTGTCGCTGTTCCCCATGG 300 *********************************************************** consensus_6422#0 AACGGTGATGTTATGTACTGAAGGGCTTAATTGTTTGAATGGATATAGAGTTGCCATGGA 332 consensus_6422#1 AACGGTGATGTTATGTACTGAAGGGCTTAATTGTTTGAATGGATATAGAGTTGCCATGGA 360 ************************************************************ consensus_6422#0 ATATCTTAGCAAAGCAGACCACCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGA 392 consensus_6422#1 ATATTTTAGCAAAGCAGACCCCCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGA 420 **** *************** *************************************** consensus_6422#0 TGTTCAAAAGCGTGAAATTTATGCGATTATGAAGGATCGTTGGATTCAAGAGCCGAAAGC 452 consensus_6422#1 TGTTCAAAAGCGTGAAATTTATGCGATTATGAAGGATCGTTGGATTCAAGAGCCGAAAGC 480 ************************************************************ consensus_6422#0 TATGCTAAGCTATTTCTGATCATATCATCTGCAACCCTTTTCAAGAACACAGTCAAGCTT 512 consensus_6422#1 TATGCTAAGCTATTTCTGATCATATCATCCGCAACCCTTTTCAAGAACACAGTCAAGCTT 540 ***************************** ****************************** consensus_6422#0 GCTTGGGAGAAACTAGTTGATATTGTCAATTATGCAAATTAAATGGAGAAGTGAGAGGAT 572 consensus_6422#1 GCTTGGGAGAAACTAGTTGATATTGTCAATTATGCAAATTAAATGGAGAAGTGAGAGGAT 600 ************************************************************ consensus_6422#0 GTTGTAAAATTGGAGATATCTTTATAGCTAAACTACTGTAATAACGTTTCTGGATATATA 632 consensus_6422#1 GTTGTAAAATTGGAGATATCTTTATAGCTAAACTACTGTAATAACGTTTCTGGATATATA 660 ************************************************************ consensus_6422#0 TTTTTATGAGTGAATTTCATTTTGGGCGTTTAAAAAAAAAAAAAAAAAAAAAAAAAGCGG 692 consensus_6422#1 TTTTTTTGAGTGAATTTC------------CAAAAAAAAAAAAA---------------- 692 ***** ************ ************* consensus_6422#0 NCGCC 697 consensus_6422#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||