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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1184 fasta sequence
[TTCCTCGAGCACTGTTGGCCTACTGGAGGACAAATCACGGCACTAGACACCACCATCCTCTTACCTTCCCGGTTTCCCGGCGTGCGTCACACATGGAGGTGGCAGCCGCGGATTCCTCCGGCGGCGACCGTTACAGGTCTCACCTTACCGGCGACGGCGAGAAGAACACGGTGTGGCGGCACGGCGCTCCACCCACGTACGACGCCGTGAACAGCCTCTTCGAGGCCGAGAGGACCCAGGAGTGGCCGGCGGGGTCGCTGGAGGAGACGGTGCAGAACGCGATCAAGACGTGGGAGATGGAGCTGTCTTACAAGGCCAAGCTCGAGGACTTCAAGTCGGTGAGCCCCGGTCGGTTCCGTCTCTCCGTGAACGGCGGGCGGCCGCTCACCGGGGAGGAGACGCTCGCCGTGGGCAGCTACAACGCGCTGCTCACGAGCCCGATCCTGCCGGGCGCCGGCGCGTACGACGCCGCGGCCGAGACGTTCGAGTCCTCCCACGATCTGTTCCGCGCGGCCTTCCCGCGCGGGTTCGCGTGGGAGGTGATCCGCGTCTACTCCGGCCCGCCGGTGATCACGTTCAAGTTCCGGCACTGGGGCCACATGGACGGCCCCTACAAGGGCCACGCCCCCACCGGCGACAAGGTCGAGTTCTACGGCGTCGCCGTCCTCAAGGTGGATGAGCAGCTGCGGGCGGAGGACGTGGAGGTGTACTACGACCCAGGCGAGCTACTGGGGGGCCTTCTCAAGGGGCCCCTGCTGGTGCCGTCCGCGGAGGAGGAGGACGCGCGTCAGCTCGGCGAGAGGCTCGGCGAGGCGGCTATCGTGTCGGCGTCAGGCGCGGCCCCGCAGTCGCAGGCCTGCCCCTTTCTCGCCTCCGCGAAGCGGGAGGAGTGAAAGGGACCGATCGAGCGGCGACGACATGGTCGAGCCGAATAGCGAAACGTGCCCCGTTCATCTGTCGTCGCTGTAACCGCCCGGCGTTTCGCCATCATGATGGAGGTGACACCGGCTGAAAACGTTTATTTGCTCGTGTGTAGCGTGTGTGCTTATGGTGTTGTTAAATGCTTTGTACGATTCGGTTGGATTTTAAAGCTGGCGTCACAACGCCTGACTTCTTTAGTTGCTTTAGTGATACTAATCCACTTATGTGGGAAGAAAAAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK109409 [TTCCTCGAGCACTGTTGGCCTACTGGAGGACAAATCACGGCACTAGACACCACCATCCTCTTACCTTCCCGGTTTCCCGGCGTGCGTCACACATGGAGGTGGCAGCCGCGGATTCCTCCGGCGGCGACCGTTACAGGTCTCACCTTACCGGCGACGGCGAGAAGAACACGGTGTGGCGGCACGGCGCTCCACCCACGTACGACGCCGTGAACAGCCTCTTCGAGGCCGAGAGGACCCAGGAGTGGCCGGCGGGGTCGCTGGAGGAGACGGTGCAGAACGCGATCAAGACGTGGGAGATGGAGCTGTCTTACAAGGCCAAGCTCGAGGACTTCAAGTCGGTGAGCCCCGGTCGGTTCCGTCTCTCCGTGAACGGCGGGCGGCCGCTCACCGGGGAGGAGACGCTCGCCGTGGGCAGCTACAACGCGCTGCTCACGAGCCCGATCCTGCCGGGCGCCGGCGCGTACGACGCCGCGGCCGAGACGTTCGAGTCCTCCCACGATCTGTTCCGCGCGGCCTTCCCGCGCGGGTTCGCGTGGGAGGTGATCCGCGTCTACTCCGGCCCGCCGGTGATCACGTTCAAGTTCCGGCACTGGGGCCACATGGACGGCCCCTACAAGGGCCACGCCCCCACCGGCGACAAGGTCGAGTTCTACGGCGTCGCCGTCCTCAAGGTGGATGAGCAGCTGCGGGCGGAGGACGTGGAGGTGTACTACGACCCAGGCGAGCTACTGGGGGGCCTTCTCAAGGGGCCCCTGCTGGTGCCGTCCGCGGAGGAGGAGGACGCGCGTCAGCTCGGCGAGAGGCTCGGCGAGGCGGCTATCGTGTCGGCGTCAGGCGCGGCCCCGCAGTCGCAGGCCTGCCCCTTTCTCGCCTCCGCGAAGCGGGAGGAGTGAAAGGGACCGATCGAGCGGCGACGACATGGTCGAGCCGAATAGCGAAACGTGCCCCGTTCATCTGTCGTCGCTGTAACCGCCCGGCGTTTCGCCATCATGATGGAGGTGACACCGGCTGAAAACGTTTATTTGCTCGTGTGTAGCGTGTGTGCTTATGGTGTTGTTAAATGCTTTGTACGATTCGGTTGGATTTTAAAGCTGGCGTCACAACGCCTGACTTCTTTAGTTGCTTTAGTGATACTAATCCACTTATGTGGGAAGAAAAAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK061471 [ CACTAGACACCACCATCCTCTTACCTTCCCGGTTTCCCGGCGTGCGTCACACATGGAGGTGGCAGCCGCGGATTCCTCCGGCGGCGACCGTTACAGGTCTCACCTTACCGGCGACGGCGAGAAGAACACGGTGTGGCGGCACGGCGCTCCACCCACGTACGACGCCGTGAACAGCCTCTTCGAGGCCGAGAGGACCCAGGAGTGGCCGGCGGGGTCGCTGGAGGAGACGGTGCAGAACGCGATCAAGACGTGGGAGATGGAGCTGTCTTACAAGGCCAAGCTCGAGGACTTCAAGTCGGTGAGCCCCGGTCGGTTCCGTCTCTCCGTGAACGGCGGGCGGCCGCTCACCGGGGAGGAGACGCTCGCCGTGGGCAGCTACAACGCGCTGCTCACGAGCCCGATCCTGCCGGGCGCCGGCGCGTACGACGCCGCGGCCGAGACGTTCGAGTCCTCCCACGATCTGTTCCGCGCGGCCTTCCCGCGCGGGTTCGCGTGGGAGGTGATCCGCGTCTACTCCGGCCCGCCGGTGATCACGTTCAAGTTCCGGCACTGGGGCCACATGGACGGCCCCTACAAGGGCCACGCCCCCACCGGCGACAAGGTCGAGTTCTACGGCGTCGCCGTCCTCAAGGTGGATGAGCAGCTGCGGGCGGAGGACGTGGAGGTGTACTACGACCCAGGCGAGCTACTGGGGGGCCTTCTCAAGGGGCCCCTGCTGGTGCCGTCCGCGGAGGAGGAGGACGCGCGTCAGCTCGGCGAGAGGCTCGGCGAGGCGGCTATCGTGTCGGCGTCAGGCGCGGCCCCGCAGTCGCAGGCCTGCCCCTTTCTCGCCTCCGCGAAGCGGGAGGAGTGAAAGGGACCGATCGAGCGGCGACGACATGGTCGAGCCGAATAGCGAAACGTGCCCCGTTCATCTGTCGTCGCTGTAACCGCCCGGCGTTTCGCCATCATGATGGAGGTGACACCGGCTGAAAACGTTTATTTGCTCGTGTGTAGCGTGTGTGCTTATGGTGTTGTTAAATGCTTTGTACGATTCGGTTGGATTTTAAAGCTGGCGTCACAACGCC ]
[+] EMBL AK106037 [ CACTAGACACCACCATCCTCTTACCTTCCCGGTTTCCCGGCGTGCGTCACACATGGAGGTGGCAGCCGCGGATTCCTCCGGCGGCGACCGTTACAGGTCTCACCTTACCGGCGACGGCGAGAAGAACACGGTGTGGCGGCACGGCGCTCCACCCACGTACGACGCCGTGAACAGCCTCTTCGAGGCCGAGAGGACCCAGGAGTGGCCGGCGGGGTCGCTGGAGGAGACGGTGCAGAACGCGATCAAGACGTGGGAGATGGAGCTGTCTTACAAGGCCAAGCTCGAGGACTTCAAGTCGGTGAGCCCCGGTCGGTTCCGTCTCTCCGTGAACGGCGGGCGGCCGCTCACCGGGGAGGAGACGCTCGCCGTGGGCAGCTACAACGCGCTGCTCACGAGCCCGATCCTGCCGGGCGCCGGCGCGTACGACGCCGCGGCCGAGACGTTCGAGTCCTCCCACGATCTGTTCCGCGCGGCCTTCCCGCGCGGGTTCGCGTGGGAGGTGATCCGCGTCTACTCCGGCCCGCCGGTGATCACGTTCAAGTTCCGGCACTGGGGCCACATGGACGGCCCCTACAAGGGCCACGCCCCCACCGGCGACAAGGTCGAGTTCTACGGCGTCGCCGTCCTCAAGGTGGATGAGCAGCTGCGGGCGGAGGACGTGGAGGTGTACTACGACCCAGGCGAGCTACTGGGGGGCCTTCTCAAGGGGCCCCTGCTGGTGCCGTCCGCGGAGGAGGAGGACGCGCGTCAGCTCGGCGAGAGGCTCGGCGAGGCGGCTATCGTGTCGGCGTCAGGCGCGGCCCCGCAGTCGCAGGCCTGCCCCTTTCTCGCCTCCGCGAAGCGGGAGGAGTGAAAGGGACCGATCGAGCGGCGACGACATGGTCGAGCCGAATAGCGAAACGTGCCCCGTTCATCTGTCGTCGCTGTAACCGCCCGGCGTTTCGCCATCATGATGGAGGTGACACCGGCTGAAAACGTTTATTTGCTCGTGTGTAGCGTGTGTGCTTATGGTGTTGTTAAATGCTTTGTACGATTCGGTTGGATTTTAAAGCTGGCGTCACAACGCC ]
consensusID : consensus_6428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 784 fasta sequence
[TGTCTCTGTCTCTCTCTCTCTCTCTCTCTCCACCACCATCCTCTTACCTTCCCGGTTTCCCGGCGTGCGTCACAGATGGAGGTGGCAGCCGCGGATTCCTCCGGCGGCGACCGTTACAGGTCTCACCTTACCGGCGACGGCGAGAAAAACACGGTGTGGCGGCACGGCGCTCCACCCACGTACGACGCCGTGAACAGCCTCTTCGAGGCCGAGAGGACCCAGGAGTGGCCGGCGGGGTCGCTGGAGGAGACGGTGCANAACGCGATCAAGACGTGGGAGATGGAGCTGTCGCACAAGGCCAAGCTCGAGGACTTCAAGTCGGTGAGCCCCGGTCGGTTCCGTCTCTCCGTGAACGGCGGGCGGCCGCTCACCGGGGAGGAGACGCTCGCCGTGGGCAGCTACAACGCGCTGCTCACGAGCCCGATCCTGCCGGGCGCCGGCGCGTACGACGCCGCGGCCGAGACGTTCGAGTCCTCCCACGATCTGTTCCGCGCGGGCTTCCCGCGCGGGTTCGCGTGGGAGGTGATCCGCGTCTACTCCGGGCCCGCCGGTGATCACGTTCAAGTTCCGGCACTGGGGCCACATGGACGGGCCCTACAAGGGCCACGCCCCCCACCGCGACAGGGCGAGTTCTACGGCGTCGCCGTCCTTAAGGGGATGAACCACTTCNGGCCGGAGGACGTGGAGGTAGCATCTACCCAGGCGACGTACCTGGGGGGCCTTCTCAATGGGCCCCTGCTTGGTGCCGCTCCCGGGGGGGGAGGACTCGCCTATACTTCGGCGG]
[+] EMBL BE040667 [TGTCTCTGTCTCTCTCTCTCTCTCTCTCTCCACCACCATCCTCTTACCTTCCCGGTTTCCCGGCGTGCGTCACAGATGGAGGTGGCAGCCGCGGATTCCTCCGGCGGCGACCGTTACAGGTCTCACCTTACCGGCGACGGCGAGAAAAACACGGTGTGGCGGCACGGCGCTCCACCCACGTACGACGCCGTGAACAGCCTCTTCGAGGCCGAGAGGACCCAGGAGTGGCCGGCGGGGTCGCTGGAGGAGACGGTGCANAACGCGATCAAGACGTGGGAGATGGAGCTGTCGCACAAGGCCAAGCTCGAGGACTTCAAGTCGGTGAGCCCCGGTCGGTTCCGTCTCTCCGTGAACGGCGGGCGGCCGCTCACCGGGGAGGAGACGCTCGCCGTGGGCAGCTACAACGCGCTGCTCACGAGCCCGATCCTGCCGGGCGCCGGCGCGTACGACGCCGCGGCCGAGACGTTCGAGTCCTCCCACGATCTGTTCCGCGCGGGCTTCCCGCGCGGGTTCGCGTGGGAGGTGATCCGCGTCTACTCCGGGCCCGCCGGTGATCACGTTCAAGTTCCGGCACTGGGGCCACATGGACGGGCCCTACAAGGGCCACGCCCCCCACCGCGACAGGGCGAGTTCTACGGCGTCGCCGTCCTTAAGGGGATGAACCACTTCNGGCCGGAGGACGTGGAGGTAGCATCTACCCAGGCGACGTACCTGGGGGGCCTTCTCAATGGGCCCCTGCTTGGTGCCGCTCCCGGGGGGGGAGGACTCGCCTATACTTCGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6428#0 TTCCTCGAGCACTGTTGGCCTACTGGAGGACAAATCACGGCACTAGACACCACCATCCTC 60
consensus_6428#1 ----------------TGTCT-CTGTCTCTCTCTCTCTCTCTCTCTCCACCACCATCCTC 43
* ** *** * * ** *************
consensus_6428#0 TTACCTTCCCGGTTTCCCGGCGTGCGTCACACATGGAGGTGGCAGCCGCGGATTCCTCCG 120
consensus_6428#1 TTACCTTCCCGGTTTCCCGGCGTGCGTCACAGATGGAGGTGGCAGCCGCGGATTCCTCCG 103
******************************* ****************************
consensus_6428#0 GCGGCGACCGTTACAGGTCTCACCTTACCGGCGACGGCGAGAAGAACACGGTGTGGCGGC 180
consensus_6428#1 GCGGCGACCGTTACAGGTCTCACCTTACCGGCGACGGCGAGAAAAACACGGTGTGGCGGC 163
******************************************* ****************
consensus_6428#0 ACGGCGCTCCACCCACGTACGACGCCGTGAACAGCCTCTTCGAGGCCGAGAGGACCCAGG 240
consensus_6428#1 ACGGCGCTCCACCCACGTACGACGCCGTGAACAGCCTCTTCGAGGCCGAGAGGACCCAGG 223
************************************************************
consensus_6428#0 AGTGGCCGGCGGGGTCGCTGGAGGAGACGGTGCAGAACGCGATCAAGACGTGGGAGATGG 300
consensus_6428#1 AGTGGCCGGCGGGGTCGCTGGAGGAGACGGTGCANAACGCGATCAAGACGTGGGAGATGG 283
********************************** *************************
consensus_6428#0 AGCTGTCTTACAAGGCCAAGCTCGAGGACTTCAAGTCGGTGAGCCCCGGTCGGTTCCGTC 360
consensus_6428#1 AGCTGTCGCACAAGGCCAAGCTCGAGGACTTCAAGTCGGTGAGCCCCGGTCGGTTCCGTC 343
******* ***************************************************
consensus_6428#0 TCTCCGTGAACGGCGGGCGGCCGCTCACCGGGGAGGAGACGCTCGCCGTGGGCAGCTACA 420
consensus_6428#1 TCTCCGTGAACGGCGGGCGGCCGCTCACCGGGGAGGAGACGCTCGCCGTGGGCAGCTACA 403
************************************************************
consensus_6428#0 ACGCGCTGCTCACGAGCCCGATCCTGCCGGGCGCCGGCGCGTACGACGCCGCGGCCGAGA 480
consensus_6428#1 ACGCGCTGCTCACGAGCCCGATCCTGCCGGGCGCCGGCGCGTACGACGCCGCGGCCGAGA 463
************************************************************
consensus_6428#0 CGTTCGAGTCCTCCCACGATCTGTTCCGCGCGGCCTTCCCGCGCGGGTTCGCGTGGGAGG 540
consensus_6428#1 CGTTCGAGTCCTCCCACGATCTGTTCCGCGCGGGCTTCCCGCGCGGGTTCGCGTGGGAGG 523
********************************* **************************
consensus_6428#0 TGATCCGCGTCTACTCCGG-CCCGCCGGTGATCACGTTCAAGTTCCGGCACTGGGGCCAC 599
consensus_6428#1 TGATCCGCGTCTACTCCGGGCCCGCCGGTGATCACGTTCAAGTTCCGGCACTGGGGCCAC 583
******************* ****************************************
consensus_6428#0 ATGGACGGCCCCTACAAGGGCCACGCCCCCACCGGCGACAAGGTCGAGTTCTACGGCGTC 659
consensus_6428#1 ATGGACGGGCCCTACAAGGGCCACGCCCCCCACCGCGACAGGG-CGAGTTCTACGGCGTC 642
******** ********************* * ****** ** ****************
consensus_6428#0 GCCGTCCTCAAGGTGGATGAGCAGCTGCGGGC-GGAGGACGTGGAGGTGTACTACGACCC 718
consensus_6428#1 GCCGTCCTTAAGG-GGATGAACCACTTCNGGCCGGAGGACGTGGAGGTA-GCATCTACCC 700
******** **** ****** * ** * *** *************** * * ****
consensus_6428#0 AGGCGAGCTAC-TGGGGGGCCTTCTCAAGGGGCCCCTGCT-GGTGCCGTCCGCGGAGGAG 776
consensus_6428#1 AGGCGACGTACCTGGGGGGCCTTCTCAATGGGCCCCTGCTTGGTGCCGCTCCCGGGGGGG 760
****** *** **************** *********** ******* * *** ** *
consensus_6428#0 GAGGACGCGCGT-CAGCTCGGCGAGAGGCTCGGCGAGGCGGCTATCGTGTCGGCGTCAGG 835
consensus_6428#1 GAGGACTCGCCTATACTTCGGCGG------------------------------------ 784
****** *** * * ******
consensus_6428#0 CGCGGCCCCGCAGTCGCAGGCCTGCCCCTTTCTCGCCTCCGCGAAGCGGGAGGAGTGAAA 895
consensus_6428#1 ------------------------------------------------------------
consensus_6428#0 GGGACCGATCGAGCGGCGACGACATGGTCGAGCCGAATAGCGAAACGTGCCCCGTTCATC 955
consensus_6428#1 ------------------------------------------------------------
consensus_6428#0 TGTCGTCGCTGTAACCGCCCGGCGTTTCGCCATCATGATGGAGGTGACACCGGCTGAAAA 1015
consensus_6428#1 ------------------------------------------------------------
consensus_6428#0 CGTTTATTTGCTCGTGTGTAGCGTGTGTGCTTATGGTGTTGTTAAATGCTTTGTACGATT 1075
consensus_6428#1 ------------------------------------------------------------
consensus_6428#0 CGGTTGGATTTTAAAGCTGGCGTCACAACGCCTGACTTCTTTAGTTGCTTTAGTGATACT 1135
consensus_6428#1 ------------------------------------------------------------
consensus_6428#0 AATCCACTTATGTGGGAAGAAAAAAAAAAAAAAAAAAAAAAGGCCACAT 1184
consensus_6428#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||