These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6441#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [ACGCCCTCCATCCACCATATCAGGAGGGAGAACAGGCCGCAGGAGCGGAGGCGGCGGCGCGCGGCGTGCTCCCCCTTCCGCTCTGTACGGCGGGAAGGAAGGCTCGCACCTCCTCCTCTCCATCGGCGACCACGACGTCGGCGGCTTCCCATGGAGGATCCTCAGGCGACGGCGGCTTTCCGCGACTGCAGTGGTGGTGGTGGTGCAGAAGGCGGCGGCGCCGTCCTCCTCCTCTCCATCCGACAACGGTGGAGGAGCTGGAGAAGGCCGACGTGGAGGGCGAGGTGACGGCTAGTGATGCGAAAGAAGAGGCTTCTTTTCGATCATGATGTTAATGTGTTCATGATGTATTACTGAAGTTCTTGATGTGTTCTTGATGTTCTCGGGTCAGCTTGATTCGTGCTTTGTGTTCATGATGTTCTTGTTGTGTTCTTGAAGTTCTTGATGTGCTCGGGTCGGCATGATTCGAGGAAAGCTAGCATTCTTTTTGGCTCGTTCATCATTATAGGTGTTGGTTCTAAAACGACACC] [+] EMBL CA764199 [ACGCCCTCCATCCACCATATCAGGAGGGAGAACAGGCCGCAGGAGCGGAGGCGGCGGCGCGCGGCGTGCTCCCCCTTCCGCTCTGTACGGCGGGAAGGAAGGCTCGCACCTCCTCCTCTCCATCGGCGACCACGACGTCGGCGGCTTCCCATGGAGGATCCTCAGGCGACGGCGGCTTTCCGCGACTGCAGTGGTGGTGGTGGTGCAGAAGGCGGCGGCGCCGTCCTCCTCCTCTCCATCCGACAACGGTGGAGGAGCTGGAGAAGGCCGACGTGGAGGGCGAGGTGACGGCTAGTGATGCGAAAGAAGAGGCTTCTTTTCGATCATGATGTTAATGTGTTCATGATGTATTACTGAAGTTCTTGATGTGTTCTTGATGTTCTCGGGTCAGCTTGATTCGTGCTTTGTGTTCATGATGTTCTTGTTGTGTTCTTGAAGTTCTTGATGTGCTCGGGTCGGCATGATTCGAGGAAAGCTAGCATTCTTTTTGGCTCGTTCATCATTATAGGTGTTGGTTCTAAAACGACACC] consensusID : consensus_6441#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 450 fasta sequence [CCCTACATCTGCCCAGATTCCACGGAAGGAGAACCCAGACCTGCCCACGAGCGGATGCGTCGGCGCGCTCTCCCTTCCACTCCATCCAGCGGGAAGGAAGGCTCGTGCCTCCTCCTCTCCATCGGGCGACCGCGACGTCAGCGGCTTCCTGCGGCAACAGCGGCGGTGGTGGTGCAGAAGGCAGCGGCGCCGTCCTCCTCCTCTCCATCCGACGATGATGGTGGAGCTGGAGAAGGCCAGCACTGGTGGGCGAGGTGACGGCTAGCGACGGGAAGGAAGAGGCTCCTTTTAGATCATGATGTTCTTGATGTATTACTGAAATTCTTCGATGTGTTCTTGATATGCTCAGGTCGGCTTGATTTGTGCTCTGTGTTTGCGATGTTCTTGATGTGTTCTTGAAGTTCTTGATGTGCTCGGGTCGGTTTGATTCGAGCAAAGCCGGCAAAAAAA] [+] EMBL BI800018 [CCCTACATCTGCCCAGATTCCACGGAAGGAGAACCCAGACCTGCCCACGAGCGGATGCGTCGGCGCGCTCTCCCTTCCACTCCATCCAGCGGGAAGGAAGGCTCGTGCCTCCTCCTCTCCATCGGGCGACCGCGACGTCAGCGGCTTCCTGCGGCAACAGCGGCGGTGGTGGTGCAGAAGGCAGCGGCGCCGTCCTCCTCCTCTCCATCCGACGATGATGGTGGAGCTGGAGAAGGCCAGCACTGGTGGGCGAGGT ] [+] EMBL AU172702 [ ATCTG CCAGAT CA GGAAGGAGAA CAGA CTGCCC GGAGCGGATGCGCCGGCGCACTCTCCCTTCCACTCCATCCAGCGGGAAGGAAGGCTCGTGCCTCCTCCTCTCCATCGGGCGACCGCGACGTCAGCGGCTTCCTGCGGCAACAGCGGCGGTGGTGGTGCAGAAGGCGGCGGCGCCGTCCTCCTCCTCTCCATCCGACGATGATGGTGGAGCTGGAGAAGGCCAGCA TGGTGGGTGAGGTGACGGCTAGCGACGGGAAGGAAGAGGCTCCTTTTAGATCATGATGTTCTTGATGTATTACTGAAATTCTTCGATGTGTTCTTGATATGCTCAGGTCGGCTTGATTTGTGCTCTGTGTTTGCGATGTTCTTGATGTGTTCTTGAAGTTCTTGATGTGCTCGGGTCGGTTTGATTCGAGCAAAGCCGGCAAAAAAA] consensusID : consensus_6441#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [TCCACCACTCTCTCCCTCTCTNAATGGCCTGGTGAAGGTGGAGGCGGCGGGGGCCTGGTAGCAGCGCTCTCCCCTCCGTNAGATCCGGCAGGAGGGGAGGTGGCAACGGCGCCCTACATCTGCCAGATCAGGAAGGAGAACAGACTGCCGGAGCGGATGCGCCGGCGCACTCTCCCTTCCACTCCATCCAGCGGGAAGGAAGGCTCGTGCCTCCTCCTCTCCATCGGGCGACCGCNACGTCAGCGGCTTCCTGCGGCAACAGCGGCGGTGGTGGTGCAGAAGGCGGCGGCGCGTCCCTCCTCCTCTCCATCCGACGATGATGGTGGAGCTGGAGAAGGCCAGCATNGTGGGTGAGGTNACGGCTAGCGACGGGAAGGAAGAGGNTCT] [+] EMBL OSC420 [TCCACCACTCTCTCCCTCTCTNAATGGCCTGGTGAAGGTGGAGGCGGCGGGGGCCTGGTAGCAGCGCTCTCCCCTCCGTNAGATCCGGCAGGAGGGGAGGTGGCAACGGCGCCCTACATCTGCCAGATCAGGAAGGAGAACAGACTGCCGGAGCGGATGCGCCGGCGCACTCTCCCTTCCACTCCATCCAGCGGGAAGGAAGGCTCGTGCCTCCTCCTCTCCATCGGGCGACCGCNACGTCAGCGGCTTCCTGCGGCAACAGCGGCGGTGGTGGTGCAGAAGGCGGCGGCGCGTCCCTCCTCCTCTCCATCCGACGATGATGGTGGAGCTGGAGAAGGCCAGCATNGTGGGTGAGGTNACGGCTAGCGACGGGAAGGAAGAGGNTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6441#0 ------------------------------------------------------------ consensus_6441#1 ------------------------------------------------------------ consensus_6441#2 TCCACCACTCTCTCCCTCTCTNAATGGCCTGGTGAAGGTGGAGGCGGCGGGGGCCTGGTA 60 consensus_6441#0 ------------------------------------------------ACGCCCTCCATC 12 consensus_6441#1 ---------------------------------------------------CCCTACATC 9 consensus_6441#2 GCAGCGCTCTCCCCTCCGTNAGATCCGGCAGGAGGGGAGGTGGCAACGGCGCCCTACATC 120 **** **** consensus_6441#0 CACC-ATATCAGGAGGGAGAACAGGCCGCAGGAGCGGAGGCGGCGGCGCG-CGGCGTGCT 70 consensus_6441#1 TGCCCAGATTCCACGGAAGGAGAACCCAGACCTGCCCACGAGCGGATGCGTCGGCGCGCT 69 consensus_6441#2 TGCC-AGATCAGGAAGGAGAACAGACTGCCGGAGCGGA--------TGCGCCGGCGCACT 171 ** * ** * ** * * * ** * *** ***** ** consensus_6441#0 CCCCCTTCCGCTCTGTACGGCGGGAAGGAAGGCTCGCACCTCCTCCTCTCCATCGG-CGA 129 consensus_6441#1 CTCCCTTCCACTCCATCCAGCGGGAAGGAAGGCTCGTGCCTCCTCCTCTCCATCGGGCGA 129 consensus_6441#2 CTCCCTTCCACTCCATCCAGCGGGAAGGAAGGCTCGTGCCTCCTCCTCTCCATCGGGCGA 231 * ******* *** * * ***************** ****************** *** consensus_6441#0 CCACGACGTCGGCGGCTTCCCATGGAGGATCCTCAGGCGACGGCGGCTTTCCGCGACTGC 189 consensus_6441#1 CCGCGACGTCAGCGGCTTCCT-------------------------------GCGGCAAC 158 consensus_6441#2 CCGCNACGTCAGCGGCTTCCT-------------------------------GCGGCAAC 260 ** * ***** ********* *** * * consensus_6441#0 AGTGGTGGTGGTGGTGCAGAAGGCGGCGGCGCCGTCCTCCTCCTCTCCATCCGACAACGG 249 consensus_6441#1 AGCGGCGGTGGTGGTGCAGAAGGCAGCGGCGCCGTCCTCCTCCTCTCCATCCGACGATGA 218 consensus_6441#2 AGCGGCGGTGGTGGTGCAGAAGGCGGCGGCGCGTCCCTCCTCCTCTCCATCCGACGATGA 320 ** ** ****************** ******* ******************** * * consensus_6441#0 TGGAGGAGCTGGAGAAGGCCGACG-TGGAGGGCGAGGTGACGGCTAGTGATGCGAAAGAA 308 consensus_6441#1 TGGTGGAGCTGGAGAAGGCCAGCACTGGTGGGCGAGGTGACGGCTAGCGACGGGAAGGAA 278 consensus_6441#2 TGGTGGAGCTGGAGAAGGCCAGCA-TNGTGGGTGAGGTNACGGCTAGCGACGGGAAGGAA 379 *** **************** * * * *** ***** ******** ** * *** *** consensus_6441#0 GAGGCTTCTTTTCGATCATGATGTTAATGTGTTCATGATGTATTACTGAAGTTCTT-GAT 367 consensus_6441#1 GAGGCTCCTTTTAGATCATGATG--------TTCTTGATGTATTACTGAAATTCTTCGAT 330 consensus_6441#2 GAGGNTCT---------------------------------------------------- 387 **** * consensus_6441#0 GTGTTCTTGATGTTCTCGGGTCAGCTTGATTCGTGCTTTGTGTTCATGATGTTCTTGTTG 427 consensus_6441#1 GTGTTCTTGATATGCTCAGGTCGGCTTGATTTGTGCTCTGTGTTTGCGATGTTCTTGATG 390 consensus_6441#2 ------------------------------------------------------------ consensus_6441#0 TGTTCTTGAAGTTCTTGATGTGCTCGGGTCGGCATGATTCGAGGAAAGCTAGCATTCTTT 487 consensus_6441#1 TGTTCTTGAAGTTCTTGATGTGCTCGGGTCGGTTTGATTCGAGCAAAGCCGGCAAAAAAA 450 consensus_6441#2 ------------------------------------------------------------ consensus_6441#0 TTGGCTCGTTCATCATTATAGGTGTTGGTTCTAAAACGACACC 530 consensus_6441#1 ------------------------------------------- consensus_6441#2 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||