These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6451#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1601 fasta sequence [CTAGCTTGACTCGTGCGCCGCCTACTTTCGCCAATCGCCATGGTGCAAGCCGCCTCGACCTCCTCGCGCTTTCTCCGCACAACCCGTCTCCACGGCTCCTCCACCTCCACCACGCCAGCGGAGCCCGCAGCCTCCGCGTAGCCGGCGGCGGCTCCTCCTCCTCTCATCGCGCTATCTCTCTCTCTCGGATTTCAGGATGTCGATTTGGCGTGTCCCTAATTATGATGTGTTGGAGAAGTGTACAGAAGATATCCTCTCTCTAATCAAACCAGTGGAGGGTGACCGAAACAAACGAATATATGCAATTCAGGAGCTGGCAGATACAATCTATTCAGCTGGGGCCTTGAGAGGTGCTTCTGTAAAACCTTTTGGATCCTTCGTATCACAACTTTATGCAAAATCAGGTGATTTGGATGTGTCAGTTGAGCTGTTCAATGCCTTGAATCTCCCTATAAGTAAGAGAAAGAAGCAAGATACCCTGAGAGAAGTAAGGAGAGCTTTGCAAAAGCGAGGTATTGCTAGACATATGGAGTTCATTCCTAATGCAAGAGTTCCAGTCCTTCAGTATGTGAGCAACCAATATGGTATTTCCTGTGATATATCCATTAGCAATTACCCTGGTCGAATTAAATCGAAAATCTTCTACTGGATCAATACTTTGGATGATCGCTTTGGTGATATGGTTTTATTGGTCAAGGAATGGGCCAAAGCTCAAAACATTAATGATCCAAAAAATGGAACCCTGAATTCCTATTCACTTTGTCTACTTGTTCTCTTTCATTTTCAGACATGTGAACCTGCAATATTACCACCGCTGAAGGAGATTTATGAAGGGAACATCATGGAGGACATTTCAGATAAGATTTCATTATGGGAATATGGCTTACCTGTGATGGATAGTGACTATCTATTTGTCAGTGCCTTGCTGTTTAACTGCTGCATTCACATACAGGGAGGGCGTACTATAATGAGAAACATCTTGATGAGGTTTGCTCCATAAATATAGAAAGATTCCGGCGCCAAAATATGGGGCAAAGAAATCAGAGCTCTCTTTCTCATCTACTTGCATCATTCTTTCACAAGTTTTTCCGCATCGATGCCCTTTCGGATAAGGTTATATCGACTTACACTGGTCGGTTGGAGAGAATCCAGGACAATCCAAGATGGATGGACAAGTCATACAGCTTGTTTGTTGAAGATCCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATATTGTCAATGCCTTCAGCAACGCGAGCAATAAGTTTGTTTCTGATGCGCATGCGCTTACTGACCGAAATGGATTATTGTCACTGCTTTGCACACCTGATGTTGGATCAAAACTTGGTGGAAGAGCCAGTGCCAGCCGTTATACAAATACCTTAGTGAGTCCTCATGACAGATTTTTATGATATCTTGACTATGTGGCACCTAACCCATACGATGATCATCATCACCAGCCAGCCAGAGGAGGAAGCAGGTCAGGTCAGAGTCCACATGGGTATACTACCAACCGGCAAACTGCAGTGCATTACCAGAACAATAATCATCCACAGGCATATAACACGCAGCGGCA] [+] EMBL AK073619 [CTAGCTTGACTCGTGCGCCGCCTACTTTCGCCAATCGCCATGGTGCAAGCCGCCTCGACCTCCTCGCGCTTTCTCCGCACAACCCGTCTCCACGGCTCCTCCACCTCCACCACGCCAGCGGAGCCCGCAGCCTCCGCGTAGCCGGCGGCGGCTCCTCCTCCTCTCATCGCGCTATCTCTCTCTCTCGGATTTCAGGATGTCGATTTGGCGTGTCCCTAATTATGATGTGTTGGAGAAGTGTACAGAAGATATCCTCTCTCTAATCAAACCAGTGGAGGGTGACCGAAACAAACGAATATATGCAATTCAGGAGCTGGCAGATACAATCTATTCAGCTGGGGCCTTGAGAGGTGCTTCTGTAAAACCTTTTGGATCCTTCGTATCACAACTTTATGCAAAATCAGGTGATTTGGATGTGTCAGTTGAGCTGTTCAATGCCTTGAATCTCCCTATAAGTAAGAGAAAGAAGCAAGATACCCTGAGAGAAGTAAGGAGAGCTTTGCAAAAGCGAGGTATTGCTAGACATATGGAGTTCATTCCTAATGCAAGAGTTCCAGTCCTTCAGTATGTGAGCAACCAATATGGTATTTCCTGTGATATATCCATTAGCAATTACCCTGGTCGAATTAAATCGAAAATCTTCTACTGGATCAATACTTTGGATGATCGCTTTGGTGATATGGTTTTATTGGTCAAGGAATGGGCCAAAGCTCAAAACATTAATGATCCAAAAAATGGAACCCTGAATTCCTATTCACTTTGTCTACTTGTTCTCTTTCATTTTCAGACATGTGAACCTGCAATATTACCACCGCTGAAGGAGATTTATGAAGGGAACATCATGGAGGACATTTCAGATAAGATTTCATTATGGGAATATGGCTTACCTGTGATGGATAGTGACTATCTATTTGTCAGTGCCTTGCTGTTTAACTGCTGCATTCACATACAGGGAGGGCGTACTATAATGAGAAACATCTTGATGAGGTTTGCTCCATAAATATAGAAAGATTCCGGCGCCAAAATATGGGGCAAAGAAATCAGAGCTCTCTTTCTCATCTACTTGCATCATTCTTTCACAAGTTTTTCCGCATCGATGCCCTTTCGGATAAGGTTATATCGACTTACACTGGTCGGTTGGAGAGAATCCAGGACAATCCAAGATGGATGGACAAGTCATACAGCTTGTTTGTTGAAGATCCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATATTGTCAATGCCTTCAGCAACGCGAGCAATAAGTTTGTTTCTGATGCGCATGCGCTTACTGACCGAAATGGATTATTGTCACTGCTTTGCACACCTGATGTTGGATCAAAACTTGGTGGAAGAGCCAGTGCCAGCCGTTATACAAATACCTTAGTGAGTCCTCATGACAGATTTTTATGATATCTTGACTATGTGGCACCTAACCCATACGATGATCATCATCACCAGCCAGCCAGAGGAGGAAGCAGGTCAGGTCAGAGTCCACATGGGTATACTACCAACCGGCAAACTGCAGTGCATTACCAGAACAATAATCATCCACAGGCATATAACACGCAGCGGCA] consensusID : consensus_6451#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1475 fasta sequence [CAATCGCCATGGTGCAAGCCGCCTCAACCTCCTCGCGCTTTCTCCGCACAACCCGTCTCCACGGCTCCTCCACCTCCACCACGCCAGCGGAGCCCGCAGCCTCCGCGTAGCCGGCGGCGGCTCCTCCTCCTCTCATCGCGCTATCTCTCTCTCTCGGATTTCAGGATGTCGATTTGGCGTGTCCCTAATTATGATGTGTTGGAGAAGTGTACAGAAGATATCCTCTCTCTAATCAAACCAGTGGAGGGTGACCGAAACAAACGAATATATGCAATTCAGGAGCTGGCAGATACAATCTATTCAGCTGGGGCCTTGAGAGGTGCTTCTGTAAAACCTTTTGGATCCTTCGTATCACAACTTTATGCAAAATCAGGTGATTTGGATGTGTCAGTTGAGCTGTTCAATGCCTTGAATCTCCCTATAAGTAAGAGAAAGAAGCAAGATACCCTGAGAGAAGTAAGGAGAGCTTTGCAAAAGCGAGGTATTGCTAGACATATGGAGTTCATTCCTAATGCAAGAGTTCCAGTCCTTCAGTATGTGAGCAACCAATATGGTATTTCCTGTGATATATCCATTAGCAATTACCCTGGTCGAATTAAATCGAAAATCTTCTACTGGATCAATACTTTGGATGATCGCTTTGGTGATATGGTTTTATTGGTCAAGGAATGGGCCAAAGCTCAAAACATTAATGATCCAAAAAATGGAACCCTGAATTCCTATTCACTTTGTCTACTTGTTCTCTTTCATTTTCAGACATGTGAACCTGCAATATTACCACCGCTGAAGGAGATTTATGAAGGGAACATCATGGAGGACATTTCAGGGAGGGCGTACTATAATGAGAAACATCTTGATGAGGTTTGCTCCATAAATATAGAAAGATTCCGGCGCCAAAATATGGGGCAAAGAAATCAGAGCTCTCTTTCTCATCTACTTGCATCATTCTTTCACAAGTTTTTCCGCATCGATGCCCTTTCGGATAAGGTTATATCGACTTACACTGGTCGGTTGGAGAGAATCCAGGACAATCCAAGATGGATGGACAAGTCATACAGCTTGTTTGTTGAAGATCCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATATTGTCAATGCCTTCAGCAACGCGA-GCAATAAGTTTGTTTCTGATGCGCATGCGCTTAC-TGACCGAAATGGATTATTGTCACTGCTTTGCAC-ACCTGATG-TTGGATCAAAACTT-GGTGGAAGAGCCA-GTGCCAGCCGTTATACAAATACCTTAGTGAGTCCTCATGACAGATTTTTATGATATCTTGACTATGTGGCACCTAACCCATACGATGATCATCATCACCAGCCAGCCAGAGGAGGAAGCAGGTC-AGGTCAGAGTCCACATGGGTATACTACCAACCGGCAAACTGCAGTGCATTACCAGAACAATAATCATCCACAGGCATATAACACGCAGCGGCA] [+] EMBL AK072322 [CAATCGCCATGGTGCAAGCCGCCTCAACCTCCTCGCGCTTTCTCCGCACAACCCGTCTCCACGGCTCCTCCACCTCCACCACGCCAGCGGAGCCCGCAGCCTCCGCGTAGCCGGCGGCGGCTCCTCCTCCTCTCATCGCGCTATCTCTCTCTCTCGGATTTCAGGATGTCGATTTGGCGTGTCCCTAATTATGATGTGTTGGAGAAGTGTACAGAAGATATCCTCTCTCTAATCAAACCAGTGGAGGGTGACCGAAACAAACGAATATATGCAATTCAGGAGCTGGCAGATACAATCTATTCAGCTGGGGCCTTGAGAGGTGCTTCTGTAAAACCTTTTGGATCCTTCGTATCACAACTTTATGCAAAATCAGGTGATTTGGATGTGTCAGTTGAGCTGTTCAATGCCTTGAATCTCCCTATAAGTAAGAGAAAGAAGCAAGATACCCTGAGAGAAGTAAGGAGAGCTTTGCAAAAGCGAGGTATTGCTAGACATATGGAGTTCATTCCTAATGCAAGAGTTCCAGTCCTTCAGTATGTGAGCAACCAATATGGTATTTCCTGTGATATATCCATTAGCAATTACCCTGGTCGAATTAAATCGAAAATCTTCTACTGGATCAATACTTTGGATGATCGCTTTGGTGATATGGTTTTATTGGTCAAGGAATGGGCCAAAGCTCAAAACATTAATGATCCAAAAAATGGAACCCTGAATTCCTATTCACTTTGTCTACTTGTTCTCTTTCATTTTCAGACATGTGAACCTGCAATATTACCACCGCTGAAGGAGATTTATGAAGGGAACATCATGGAGGACATTTCAGGGAGGGCGTACTATAATGAGAAACATCTTGATGAGGTTTGCTCCATAAATATAGAAAGATTCCGGCGCCAAAATATGGGGCAAAGAAATCAGAGCTCTCTTTCTCATCTACTTGCATCATTCTTTCACAAGTTTTTCCGCATCGATGCCCTTTCGGATAAGGTTATATCGACTTACACTGGTCGGTTGGAGAGAATCCAGGACAATCCAAGATGGATGGACAAGTCATACAGCTTGTTTGTTGAAGATCCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATATTGTCAATGCCTTCAGCAACGCGA GCAATAAGTTTGTTTCTGATGCGCATGCGCTTAC TGACCGAAATGGATTATTGTCACTGCTTTGCAC ACCTGATG TTGGATCAAAACTT GGTGGAAGAGCCA GTGCCAGCCGTTATACAAATACCTTAGTGAGTCCTCATGACAGATTTTTATGATATCTTGACTATGTGGCACCTAACCCATACGATGATCATCATCACCAGCCAGCCAGAGGAGGAAGCAGGTC AGGTCAGAGTCCACATGGGTATACTACCAACCGGCAAACTGCAGTGCATTACCAGAACAATAATCATCCACAGGCATATAACACGCAGCGGCA] [+] EMBL C26260 [ ATGAGAAACATCTTGATGAGGTTTGCTCCATAAATATAGAAAGATTCCGGCGCCAAAATATGGGGCAAAGAAATCAGAGCTCTCTTTCTCATCTACTTGCATCATTCTTTCACAAGTTTTTCCGCATCGATGCCCTTTCGGATAAGGTTATATCGACTTACACTGGTCGGTTGGAGAGAATCCAGGACAATCCAAGATGGATGGACAAGTCATACAGCTTGTTTGTTGAAGATCCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATATTGTCAATGCCTTCAGCAACGCGANGCAATAAGTTTGTTTCTGATGCGCAT CGTTTACTTGACCGAAATGGATTATTGTCACTGCTTT CACAACCTGATGTTTGGA CAAAACTTGGGTGGAAGAGCCAGGTGC ] [+] EMBL D43443 [ tnTGTTTGTTGAAGATCCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATATTGTCAATGCCTTCAGCAACGCGA GCAATAAGTTTGTTTCTGATGCGCATGCGCTTAC TGACCGAAATGGATTATTGTCACTGCTTTGCAC ACCTGATG TTGGATCAAAACTT GGTGGAAGAGCCA GTGCCAGCCGTTATACAAATACCTTAGTGAGTCCTCATGACAGATTTTNATGATATCTTGACTATGTGGCACCTAACCCATACGATGATCATCATCACCAGCCAGCCAGAGGAGGAAGCAGGTCAAGGTCAGAGTCCACATG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6451#0 CTAGCTTGACTCGTGCGCCGCCTACTTTCGCCAATCGCCATGGTGCAAGCCGCCTCGACC 60 consensus_6451#1 -------------------------------CAATCGCCATGGTGCAAGCCGCCTCAACC 29 ************************* *** consensus_6451#0 TCCTCGCGCTTTCTCCGCACAACCCGTCTCCACGGCTCCTCCACCTCCACCACGCCAGCG 120 consensus_6451#1 TCCTCGCGCTTTCTCCGCACAACCCGTCTCCACGGCTCCTCCACCTCCACCACGCCAGCG 89 ************************************************************ consensus_6451#0 GAGCCCGCAGCCTCCGCGTAGCCGGCGGCGGCTCCTCCTCCTCTCATCGCGCTATCTCTC 180 consensus_6451#1 GAGCCCGCAGCCTCCGCGTAGCCGGCGGCGGCTCCTCCTCCTCTCATCGCGCTATCTCTC 149 ************************************************************ consensus_6451#0 TCTCTCGGATTTCAGGATGTCGATTTGGCGTGTCCCTAATTATGATGTGTTGGAGAAGTG 240 consensus_6451#1 TCTCTCGGATTTCAGGATGTCGATTTGGCGTGTCCCTAATTATGATGTGTTGGAGAAGTG 209 ************************************************************ consensus_6451#0 TACAGAAGATATCCTCTCTCTAATCAAACCAGTGGAGGGTGACCGAAACAAACGAATATA 300 consensus_6451#1 TACAGAAGATATCCTCTCTCTAATCAAACCAGTGGAGGGTGACCGAAACAAACGAATATA 269 ************************************************************ consensus_6451#0 TGCAATTCAGGAGCTGGCAGATACAATCTATTCAGCTGGGGCCTTGAGAGGTGCTTCTGT 360 consensus_6451#1 TGCAATTCAGGAGCTGGCAGATACAATCTATTCAGCTGGGGCCTTGAGAGGTGCTTCTGT 329 ************************************************************ consensus_6451#0 AAAACCTTTTGGATCCTTCGTATCACAACTTTATGCAAAATCAGGTGATTTGGATGTGTC 420 consensus_6451#1 AAAACCTTTTGGATCCTTCGTATCACAACTTTATGCAAAATCAGGTGATTTGGATGTGTC 389 ************************************************************ consensus_6451#0 AGTTGAGCTGTTCAATGCCTTGAATCTCCCTATAAGTAAGAGAAAGAAGCAAGATACCCT 480 consensus_6451#1 AGTTGAGCTGTTCAATGCCTTGAATCTCCCTATAAGTAAGAGAAAGAAGCAAGATACCCT 449 ************************************************************ consensus_6451#0 GAGAGAAGTAAGGAGAGCTTTGCAAAAGCGAGGTATTGCTAGACATATGGAGTTCATTCC 540 consensus_6451#1 GAGAGAAGTAAGGAGAGCTTTGCAAAAGCGAGGTATTGCTAGACATATGGAGTTCATTCC 509 ************************************************************ consensus_6451#0 TAATGCAAGAGTTCCAGTCCTTCAGTATGTGAGCAACCAATATGGTATTTCCTGTGATAT 600 consensus_6451#1 TAATGCAAGAGTTCCAGTCCTTCAGTATGTGAGCAACCAATATGGTATTTCCTGTGATAT 569 ************************************************************ consensus_6451#0 ATCCATTAGCAATTACCCTGGTCGAATTAAATCGAAAATCTTCTACTGGATCAATACTTT 660 consensus_6451#1 ATCCATTAGCAATTACCCTGGTCGAATTAAATCGAAAATCTTCTACTGGATCAATACTTT 629 ************************************************************ consensus_6451#0 GGATGATCGCTTTGGTGATATGGTTTTATTGGTCAAGGAATGGGCCAAAGCTCAAAACAT 720 consensus_6451#1 GGATGATCGCTTTGGTGATATGGTTTTATTGGTCAAGGAATGGGCCAAAGCTCAAAACAT 689 ************************************************************ consensus_6451#0 TAATGATCCAAAAAATGGAACCCTGAATTCCTATTCACTTTGTCTACTTGTTCTCTTTCA 780 consensus_6451#1 TAATGATCCAAAAAATGGAACCCTGAATTCCTATTCACTTTGTCTACTTGTTCTCTTTCA 749 ************************************************************ consensus_6451#0 TTTTCAGACATGTGAACCTGCAATATTACCACCGCTGAAGGAGATTTATGAAGGGAACAT 840 consensus_6451#1 TTTTCAGACATGTGAACCTGCAATATTACCACCGCTGAAGGAGATTTATGAAGGGAACAT 809 ************************************************************ consensus_6451#0 CATGGAGGACATTTCAGATAAGATTTCATTATGGGAATATGGCTTACCTGTGATGGATAG 900 consensus_6451#1 CATGGAGGACATTTCAG------------------------------------------- 826 ***************** consensus_6451#0 TGACTATCTATTTGTCAGTGCCTTGCTGTTTAACTGCTGCATTCACATACAGGGAGGGCG 960 consensus_6451#1 ----------------------------------------------------GGAGGGCG 834 ******** consensus_6451#0 TACTATAATGAGAAACATCTTGATGAGGTTTGCTCCATAAATATAGAAAGATTCCGGCGC 1020 consensus_6451#1 TACTATAATGAGAAACATCTTGATGAGGTTTGCTCCATAAATATAGAAAGATTCCGGCGC 894 ************************************************************ consensus_6451#0 CAAAATATGGGGCAAAGAAATCAGAGCTCTCTTTCTCATCTACTTGCATCATTCTTTCAC 1080 consensus_6451#1 CAAAATATGGGGCAAAGAAATCAGAGCTCTCTTTCTCATCTACTTGCATCATTCTTTCAC 954 ************************************************************ consensus_6451#0 AAGTTTTTCCGCATCGATGCCCTTTCGGATAAGGTTATATCGACTTACACTGGTCGGTTG 1140 consensus_6451#1 AAGTTTTTCCGCATCGATGCCCTTTCGGATAAGGTTATATCGACTTACACTGGTCGGTTG 1014 ************************************************************ consensus_6451#0 GAGAGAATCCAGGACAATCCAAGATGGATGGACAAGTCATACAGCTTGTTTGTTGAAGAT 1200 consensus_6451#1 GAGAGAATCCAGGACAATCCAAGATGGATGGACAAGTCATACAGCTTGTTTGTTGAAGAT 1074 ************************************************************ consensus_6451#0 CCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATATT 1260 consensus_6451#1 CCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATATT 1134 ************************************************************ consensus_6451#0 GTCAATGCCTTCAGCAACGCGAGCAATAAGTTTGTTTCTGATGCGCATGCGCTTACTGAC 1320 consensus_6451#1 GTCAATGCCTTCAGCAACGCGAGCAATAAGTTTGTTTCTGATGCGCATGCGCTTACTGAC 1194 ************************************************************ consensus_6451#0 CGAAATGGATTATTGTCACTGCTTTGCACACCTGATGTTGGATCAAAACTTGGTGGAAGA 1380 consensus_6451#1 CGAAATGGATTATTGTCACTGCTTTGCACACCTGATGTTGGATCAAAACTTGGTGGAAGA 1254 ************************************************************ consensus_6451#0 GCCAGTGCCAGCCGTTATACAAATACCTTAGTGAGTCCTCATGACAGATTTTTATGATAT 1440 consensus_6451#1 GCCAGTGCCAGCCGTTATACAAATACCTTAGTGAGTCCTCATGACAGATTTTTATGATAT 1314 ************************************************************ consensus_6451#0 CTTGACTATGTGGCACCTAACCCATACGATGATCATCATCACCAGCCAGCCAGAGGAGGA 1500 consensus_6451#1 CTTGACTATGTGGCACCTAACCCATACGATGATCATCATCACCAGCCAGCCAGAGGAGGA 1374 ************************************************************ consensus_6451#0 AGCAGGTCAGGTCAGAGTCCACATGGGTATACTACCAACCGGCAAACTGCAGTGCATTAC 1560 consensus_6451#1 AGCAGGTCAGGTCAGAGTCCACATGGGTATACTACCAACCGGCAAACTGCAGTGCATTAC 1434 ************************************************************ consensus_6451#0 CAGAACAATAATCATCCACAGGCATATAACACGCAGCGGCA 1601 consensus_6451#1 CAGAACAATAATCATCCACAGGCATATAACACGCAGCGGCA 1475 ***************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||