These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6464#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 609 fasta sequence [GCAATTAGTATATCGATCGGCCAGAGGAGGAAAAAATATATAAAGCGCGGGTGCACGATGCGCCGCCGCGTCGTCCCGGCGGCGGNGGCCG-TTTCCGCCCAGCTGGCAGCCGCCCTCCTCCTCCTCCTCCTCCTCCACGCCGTCACCGTCGTCGTCGTCGCCGGCGGCGGCGGCAGCGAAGTGGCCGTCGACAGGTACGCGGCTGCAGGCGCGA-TGCTGCTGCTTCCGCGGCGGCGGCGGCAGCAGCTGGAGGACGAGGTGGTGTTCCCGGCGGCGATGGCGGTCGTCGGAGCTGAGCAGCTGCAGCAGGGCGGGTCCTTCAGCGGGCTCACGGCGAACAAGCAAGCCTGCCTGCAGGGTCACTCGTGCGCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAATTGCAAGCAGTAAGCTAGCTTGCTATAGAGCTATCGATCTTATCATGTAGTATACTATAATATTGTTTATATAGTTGTTTAATTACTCATTATAATTGATTGTTGTAATTGAATCTCAATGTACCATGGACTGTACTAGTACTACTACTTGTCATATCACGCTCGTACCATGGAGCATCTTTAAGGTACC] [+] EMBL C73973 [GCAATTAGTATATCGATCGGCCAGAGGAGGAAAAAATATATAAAGCGCGGGTGCACGATGCGCCGCCGCGTCGTCCCGGCGGCGGNGGCCGTTTTCCGCCCAGCTGGCAGCCGCCCTCCTCCTCCNCCGNCTCCTCCACGCCGTCACCGTCGTCGTCGTCGCCGGCGGC GNGGCAGCGAAGTGGCCGTCGACAGGTACGCGGCTGCAGGCGCGACTGCTGCTG ] [+] EMBL AK058855 [ GCGGGTGCACGATGCGCCGCCGCGTCGTCCCGGCGGCGGCGGCCG TTTCCGCCCAGCTGGCAGCCGCCCTCCTCCTCCTCCTCCTCCTCCACGCCGTCACCGTCGTCGTCGTCGCCGGCGGCGGCGGCAGCGAAGTGGCCGTCGACAGGTACGCGGCTGCAGGCGCGA TGCTGCTGCTTCCGCGGCGGCGGCGGCAGCAGCTGGAGGACGAGGTGGTGTTCCCGGCGGCGATGGCGGTCGTCGGAGCTGAGCAGCTGCAGCAGGGCGGGTCCTTCAGCGGGCTCACGGCGAACAAGCAAGCCTGCCTGCAGGGTCACTCGTGCGCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAATTGCAAGCAGTAAGCTAGCTTGCTATAGAGCTATCGATCTTATCATGTAGTATACTATAATATTGTTTATATAGTTGTTTAATTACTCATTATAATTGATTGTTGTAATTGAATCTCAATGTACCATGGACTGTACTAGTACTACTACTTGTCATATCACGCTCGTACCATGGAGCATCTTTAAGGTACC] [+] EMBL CB685258 [ CTGGCAGCCGCCCTCCTCCTCCTCCTCCTCCTCCACGCCGTCACCGTCGTCGTCGTCGCCGGCGGCGGCGGCAGCGAAGTGGCCGTCGACAGGTACGCGGCTGCAGGCGCGA TGCTGCTGCTTCCGCGGCGGCGGCGGCAGCAGCTGGAGGACGAGGTGGTGTTCCCGGCGGCGATGGCGGTCGTCGGAGCTGAGCAGCTGCAGCAGGGCGGGTCCTTCAGCGGGCTCACGGCGAACAAGCAAGTCTGCCTGCAGGGTCACTCGTGCGCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAATTGCAAGCAGTAAGCTAGCTTGCTATAGAGCTATCGATCTTATCATGTAGTATACTATAATATTGTTTATATAGTTGTTTAATTACTCATTATAATTGATTGTTGTAATTGAATCTCAATGTACCATGGACTGTACTAGTACTACTACTTGTCATATCA ] consensusID : consensus_6464#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [GGCGGGTCCTTCAGCGGGCTCACGGCGAACAANCAAGTCTGCCTGCAGGGTCACTCGTGCGCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAATTGCAAGCAGTAAGCTAGCTTGCTATANAGCTATCGATCTTATCATGTAGTATACTATAATATTGTTTATATAGTTGTTTAATTACTCATTATAATTGATTGTTGTAATTGAATCTCAATGTACCATGGACTGTACTAGTACTACTACTTGTCNAAAAAAAAAAAAAAAAAA] [+] EMBL AU172770 [GGCGGGTCCTTCAGCGGGCTCACGGCGAACAANCAAGTCTGCCTGCAGGGTCACTCGTGCGCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAATTGCAAGCAGTAAGCTAGCTTGCTATANAGCTATCGATCTTATCATGTAGTATACTATAATATTGTTTATATAGTTGTTTAATTACTCATTATAATTGATTGTTGTAATTGAATCTCAATGTACCATGGACTGTACTAGTACTACTACTTGTCNAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6464#0 GCAATTAGTATATCGATCGGCCAGAGGAGGAAAAAATATATAAAGCGCGGGTGCACGATG 60 consensus_6464#1 ------------------------------------------------------------ consensus_6464#0 CGCCGCCGCGTCGTCCCGGCGGCGGNGGCCGTTTCCGCCCAGCTGGCAGCCGCCCTCCTC 120 consensus_6464#1 ------------------------------------------------------------ consensus_6464#0 CTCCTCCTCCTCCTCCACGCCGTCACCGTCGTCGTCGTCGCCGGCGGCGGCGGCAGCGAA 180 consensus_6464#1 ------------------------------------------------------------ consensus_6464#0 GTGGCCGTCGACAGGTACGCGGCTGCAGGCGCGATGCTGCTGCTTCCGCGGCGGCGGCGG 240 consensus_6464#1 ------------------------------------------------------------ consensus_6464#0 CAGCAGCTGGAGGACGAGGTGGTGTTCCCGGCGGCGATGGCGGTCGTCGGAGCTGAGCAG 300 consensus_6464#1 ------------------------------------------------------------ consensus_6464#0 CTGCAGCAGGGCGGGTCCTTCAGCGGGCTCACGGCGAACAAGCAAGCCTGCCTGCAGGGT 360 consensus_6464#1 ---------GGCGGGTCCTTCAGCGGGCTCACGGCGAACAANCAAGTCTGCCTGCAGGGT 51 ******************************** **** ************* consensus_6464#0 CACTCGTGCGCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAAT 420 consensus_6464#1 CACTCGTGCGCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAAT 111 ************************************************************ consensus_6464#0 TGCAAGCAGTAAGCTAGCTTGCTATAGAGCTATCGATCTTATCATGTAGTATACTATAAT 480 consensus_6464#1 TGCAAGCAGTAAGCTAGCTTGCTATANAGCTATCGATCTTATCATGTAGTATACTATAAT 171 ************************** ********************************* consensus_6464#0 ATTGTTTATATAGTTGTTTAATTACTCATTATAATTGATTGTTGTAATTGAATCTCAATG 540 consensus_6464#1 ATTGTTTATATAGTTGTTTAATTACTCATTATAATTGATTGTTGTAATTGAATCTCAATG 231 ************************************************************ consensus_6464#0 TACCATGGACTGTACTAGTACTACTACTTGTCATATCACGCTCGTACCATGGAGCATCTT 600 consensus_6464#1 TACCATGGACTGTACTAGTACTACTACTTGTCNAAAAAAAAAAAAAAAAAA--------- 282 ******************************** * * * * consensus_6464#0 TAAGGTACC 609 consensus_6464#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||