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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[TTTTTTTTTTTTTAACTGACATCATTAAGTAGGCAAACTTCTTCAAAAGTACGTTCGAATATAGACAGCATTGGACATAGTGTTCATCCTATTTCTGCAAATTTAATATGTGATTTACTGGTAACTATTCGGGGAATTTGCAAATTTGCCACTGGTTTTTTCAATTTTACAATTGTAATTTTCTAGTGGCAGTTTTGCAATAACGATTCAAAGTAGTGGTAATTTAGAATTGCCGCTAACTATTTAGTTTAAGGATTAATAATTACAATAAATAAAAAACTCTGGGCGGACGAAGAGGTCGTCGACGTCAGGGGACCGAGCAGCACTGTGAGGAGCCAGGCATGGGTAGTCCCGTACCAGTTTATCTTATCCATCGTGCAGAGCTTTTGATCCAATAAGAACCCATTGGCACTAAAATGCAAAGCATTCTCCGAACATATCTAACTCCAATAGAGTTTTCACCTATGGGTAAACTGACAAACAGGTACCATTGCCATCCCTAATAGCAACCAGTTACGAATCCAGAAGTCTGCCCTTCAGGCTACTCACGGAGAAAAACACATCATGTTATCATCCTTGTGGTGTCAACCTTCTGAATAATCAAAAGGTGGTGCATCAATCATCTTCATCTTCGNCATCCTCTTCTTCCTCTTCCTCCTCCTCTCCATAAGAGGCGNCATCATCATCTTCCTCA]
[+] EMBL CA761926 [TTTTTTTTTTTTTAACTGACATCATTAAGTAGGCAAACTTCTTCAAAAGTACGTTCGAATATAGACAGCATTGGACATAGTGTTCATCCTATTTCTGCAAATTTAATATGTGATTTACTGGTAACTATTCGGGGAATTTGCAAATTTGCCACTGGTTTTTTCAATTTTACAATTGTAATTTTCTAGTGGCAGTTTTGCAATAACGATTCAAAGTAGTGGTAATTTAGAATTGCCGCTAACTATTTAGTTTAAGGATTAATAATTACAATAAATAAAAAACTCTGGGCGGACGAAGAGGTCGTCGACGTCAGGGGACCGAGCAGCACTGTGAGGAGCCAGGCATGGGTAGTCCCGTACCAGTTTATCTTATCCATCGTGCAGAGCTTTTGATCCAATAAGAACCCATTGGCACTAAAATGCAAAGCATTCTCCGAACATATCTAACTCCAATAGAGTTTTCACCTATGGGTAAACTGACAAACAGGTACCATTGCCATCCCTAATAGCAACCAGTTACGAATCCAGAAGTCTGCCCTTCAGGCTACTCACGGAGAAAAACACATCATGTTATCATCCTTGTGGTGTCAACCTTCTGAATAATCAAAAGGTGGTGCATCAATCATCTTCATCTTCGNCATCCTCTTCTTCCTCTTCCTCCTCCTCTCCATAAGAGGCGNCATCATCATCTTCCTCA]
consensusID : consensus_6465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTCTGCAAATTTAATATGTGATTTACTGGTAACTATTCGGGGAATTTGCAAATTTGCCACTGGTTTTTTTCAATTTTACAAGGATGCCACTCGAATGACAGTTTCAGGGGCATTTTTGTAATTTTCTAGGGGCAGTTTTGCAATAACGATTCAAAGTAGGGGTAATTTAAAATTGCCGCTAACTATTTAGCTAAGGATTAATAATTACAATAAATAAAAAACTCTGGGCGGACGAAAAGGTCGTCGACGTCAGGGGACCGAGCAGCACTGTGAGGAACCAGGCATGGGTAGTCCCGTACCAGTTTATCTTATCCATCGTGCAGAGCTTTTGATCCAATAAGAACCCATAGGCACTAAAATGCAAAGCATTCTCCGAACATATCTAACTCCAATAGAGTTTTCACCTATGGGTAAACTGACAAACAGGTACCATTGCCATCCCTAATAGCAACCAGTTACGAATCCAGAAGTCTGCCCTTCAGGCTACTCACGGAGAAAAACACATCAGGTTATCATCCTTGGGGGGTCAACCTTCTGAATAATCAAAAGGTGGGGCATCAATCATCTTCATCTTCGGCATCCTCTTGTTCCTCTTCCTCCTCCTCTCCATAAAAGGCGNCATCATCATCTTCCTCATCCTCCTTGCGGCCTAATCAAGCTTATCG]
[+] EMBL CA760953 [TTTTTTTTTTTTTTTTTTTTTTCTGCAAATTTAATATGTGATTTACTGGTAACTATTCGGGGAATTTGCAAATTTGCCACTGGTTTTTTTCAATTTTACAAGGATGCCACTCGAATGACAGTTTCAGGGGCATTTTTGTAATTTTCTAGGGGCAGTTTTGCAATAACGATTCAAAGTAGGGGTAATTTAAAATTGCCGCTAACTATTTAGCTAAGGATTAATAATTACAATAAATAAAAAACTCTGGGCGGACGAAAAGGTCGTCGACGTCAGGGGACCGAGCAGCACTGTGAGGAACCAGGCATGGGTAGTCCCGTACCAGTTTATCTTATCCATCGTGCAGAGCTTTTGATCCAATAAGAACCCATAGGCACTAAAATGCAAAGCATTCTCCGAACATATCTAACTCCAATAGAGTTTTCACCTATGGGTAAACTGACAAACAGGTACCATTGCCATCCCTAATAGCAACCAGTTACGAATCCAGAAGTCTGCCCTTCAGGCTACTCACGGAGAAAAACACATCAGGTTATCATCCTTGGGGGGTCAACCTTCTGAATAATCAAAAGGTGGGGCATCAATCATCTTCATCTTCGGCATCCTCTTGTTCCTCTTCCTCCTCCTCTCCATAAAAGGCGNCATCATCATCTTCCTCATCCTCCTTGCGGCCTAATCAAGCTTATCG]
consensusID : consensus_6465#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 634 fasta sequence
[GATACGCTACGTAACGGCATGACATTTTTTTTTTTTTTTTTTTTAAC-AAATCACTGACATCATTAAGTAGGCAAACTTC-TTCAAAAGTACGTTCGAATATAGACAGCATTGGACATAGTGTTCATCCTATTTCTGCAAATTTAATATGTGATTTACTGGTAACTATTCGGGGAATTTGCAAATTTGCCATTGGTTTTTTCAATTTTGCAAGGATACCACTCTATTGACAGTTTCAGTGGCATTTTTATAATTTTCTAGTGGCAGTTTTGCAATAACGATTCAAAGTAGTGGTAATTTGGAATTGCCGCTAACTATTTAGTTTAAGGATTAATAATTACAATAAATAAAAAACTCTGGGCGGACGAAGAGGTCGTCGACGTCAGGGGACCGAGCAGCACTGTGAGGAACCAGGCATGGGTAGTCCCGTACCAGTTTATCCATTGTGCAGAGCTTTTGATCCAATAAGAACCCATAGGCACTAAAATGCAAAGCATTCTCCGAACATATCTAACTCCAATAGAGTTTTCACCTATGGGTAAACTGACAAACAGGTACCATTGCCATCCCTAATAGCAACCAGTTACGAATCCAGAAGTCTGCCCTTCAGGCTATTTCTACTCCTTCAGTCCAGTCA]
[+] EMBL CF330377 [GATACGCTACGTAACGGCATGACATTTTTTTTTTTTTTTTTTTTAAC AAATCACTGACATCATTAAGTAGGCAAACTTC TTCAAAAGTACGTTCGAATATAGACAGCATTGGACATAGTGTTCATCCTATTTCTGCAAATTTAATATGTGATTTACTGGTAACTATTCGGGGAATTTGCAAATTTGCCATTGGTTTTTTCAATTTTGCAAGGATACCACTCTATTGACAGTTTCAGTGGCATTTTTATAATTTTCTAGTGGCAGTTTTGCAATAACGATTCAAAGTAGTGGTAATTTGGAATTGCCGCTAACTATTTAGTTTAAGGATTAATAATTACAATAAATAAAAAACTCTGGGCGGACGAAGAGGTCGTCGACGTCAGGGGACCGAGCAGCACTGTGAGGAACCAGGCATGGGTAGTCCCGTACCAGTTTATCCATTGTGCAGAGCTTTTGATCCAATAAGAACCCATAGGCACTAAAATGCAAAGCATTCTCCGAACATATCTAACTCCAATAGAGTTTTCACCTATGG ]
[-] EMBL CF330376 [ TTTTAACAAAATAACTGACATCATTAAGTAGGCAAACTTCTTTNAAAAGTACGTTCGAATATAGACAGCATTGGACATAGTGTTCATCCTATTTCTGCAAATTTAATATGTGATTTACTGGTAACTATTCGGGGAATTTGCAAATTTGCCATTGGTTTTTTCAATTTTGCAAGGATACCACTCGAATGACAGTTTCAGTGGCATTTTTATAATTTTCTAGTGGCAGTTTTGCAATAACGATTCAAAGTAGTGGTAATTTGGAATTGCCGCTAACTATTTAGTTTAAGGATTAATAATTACAATAAATAAAAAACTCTGGGCGGACGAAGAGGTCGTCGACGTCAGGGGACCGAGCAGCACTGTGAGGAACCAGGCATGGGTAGTCCCGTACCAGTTTATCCATTGTGCAGAGCTTTTGATCCAATAAGAACCCATAGGCACTAAAATGCAAAGCATTCTCCGAACATATCTAACTCCAATAGAGTTTTCACCTATGGGTAAACTGACAAACAGGTACCATTGCCATCCCTAATAGCAACCAGTTACGAATCCAGAAGTCTGCCCTTCAGGCTATTTCTACTCCTTCAGTCCAGTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6465#0 --------------------------------------TTTTTTTTTTTTTAACTGACAT 22
consensus_6465#1 ------------------------------------------------------------
consensus_6465#2 GATACGCTACGTAACGGCATGACATTTTTTTTTTTTTTTTTTTTAACAAATCACTGACAT 60
consensus_6465#0 CATTAAGTAGGCAAACTTCTTCAAAAGTACGTTCGAATATAGACAGCATTGGACATAGTG 82
consensus_6465#1 --------------------------------------------------TTTTTTTTTT 10
consensus_6465#2 CATTAAGTAGGCAAACTTCTTCAAAAGTACGTTCGAATATAGACAGCATTGGACATAGTG 120
* *
consensus_6465#0 TTCATCCTATTTCTGCAAATTTAATATGTGATTTACTGGTAACTATTCGGGGAATTTGCA 142
consensus_6465#1 TTTTTTTTTTTTCTGCAAATTTAATATGTGATTTACTGGTAACTATTCGGGGAATTTGCA 70
consensus_6465#2 TTCATCCTATTTCTGCAAATTTAATATGTGATTTACTGGTAACTATTCGGGGAATTTGCA 180
** * * ***************************************************
consensus_6465#0 AATTTGCCACTGGTTTTTT-CAATTTTACAA----------------------------- 172
consensus_6465#1 AATTTGCCACTGGTTTTTTTCAATTTTACAAGGATGCCACTCGAATGACAGTTTCAGGGG 130
consensus_6465#2 AATTTGCCATTGGTTTTTT-CAATTTTGCAAGGATACCACTCTATTGACAGTTTCAGTGG 239
********* ********* ******* ***
consensus_6465#0 -----TTGTAATTTTCTAGTGGCAGTTTTGCAATAACGATTCAAAGTAGTGGTAATTTAG 227
consensus_6465#1 CATTTTTGTAATTTTCTAGGGGCAGTTTTGCAATAACGATTCAAAGTAGGGGTAATTTAA 190
consensus_6465#2 CATTTTTATAATTTTCTAGTGGCAGTTTTGCAATAACGATTCAAAGTAGTGGTAATTTGG 299
** *********** ***************************** ********
consensus_6465#0 AATTGCCGCTAACTATTTAGTTTAAGGATTAATAATTACAATAAATAAAAAACTCTGGGC 287
consensus_6465#1 AATTGCCGCTAACTATTTAGCT-AAGGATTAATAATTACAATAAATAAAAAACTCTGGGC 249
consensus_6465#2 AATTGCCGCTAACTATTTAGTTTAAGGATTAATAATTACAATAAATAAAAAACTCTGGGC 359
******************** * *************************************
consensus_6465#0 GGACGAAGAGGTCGTCGACGTCAGGGGACCGAGCAGCACTGTGAGGAGCCAGGCATGGGT 347
consensus_6465#1 GGACGAAAAGGTCGTCGACGTCAGGGGACCGAGCAGCACTGTGAGGAACCAGGCATGGGT 309
consensus_6465#2 GGACGAAGAGGTCGTCGACGTCAGGGGACCGAGCAGCACTGTGAGGAACCAGGCATGGGT 419
******* *************************************** ************
consensus_6465#0 AGTCCCGTACCAGTTTATCTTATCCATCGTGCAGAGCTTTTGATCCAATAAGAACCCATT 407
consensus_6465#1 AGTCCCGTACCAGTTTATCTTATCCATCGTGCAGAGCTTTTGATCCAATAAGAACCCATA 369
consensus_6465#2 AGTCCCGTACCAGTT-----TATCCATTGTGCAGAGCTTTTGATCCAATAAGAACCCATA 474
*************** ******* *******************************
consensus_6465#0 GGCACTAAAATGCAAAGCATTCTCCGAACATATCTAACTCCAATAGAGTTTTCACCTATG 467
consensus_6465#1 GGCACTAAAATGCAAAGCATTCTCCGAACATATCTAACTCCAATAGAGTTTTCACCTATG 429
consensus_6465#2 GGCACTAAAATGCAAAGCATTCTCCGAACATATCTAACTCCAATAGAGTTTTCACCTATG 534
************************************************************
consensus_6465#0 GGTAAACTGACAAACAGGTACCATTGCCATCCCTAATAGCAACCAGTTACGAATCCAGAA 527
consensus_6465#1 GGTAAACTGACAAACAGGTACCATTGCCATCCCTAATAGCAACCAGTTACGAATCCAGAA 489
consensus_6465#2 GGTAAACTGACAAACAGGTACCATTGCCATCCCTAATAGCAACCAGTTACGAATCCAGAA 594
************************************************************
consensus_6465#0 GTCTGCCCTTCAGGCTACTCACGGAGAAAAACACATCATGTTA-TCATCCTTGTGGTGTC 586
consensus_6465#1 GTCTGCCCTTCAGGCTACTCACGGAGAAAAACACATCAGGTTA-TCATCCTTGGGGGGTC 548
consensus_6465#2 GTCTGCCCTTCAGGCTATTTCT-------ACTCCTTCAGTCCAGTCA------------- 634
***************** * * * *** * ***
consensus_6465#0 AACCTTCTGAATAATCAAAAGGTGGTGCATCAATCATCTTCATCTTCGNCATCCTCTTCT 646
consensus_6465#1 AACCTTCTGAATAATCAAAAGGTGGGGCATCAATCATCTTCATCTTCGGCATCCTCTTGT 608
consensus_6465#2 ------------------------------------------------------------
consensus_6465#0 TCCTCTTCCTCCTCCTCTCCATAAGAGGCGNCATCATCATCTTCCTCA------------ 694
consensus_6465#1 TCCTCTTCCTCCTCCTCTCCATAAAAGGCGNCATCATCATCTTCCTCATCCTCCTTGCGG 668
consensus_6465#2 ------------------------------------------------------------
consensus_6465#0 -----------------
consensus_6465#1 CCTAATCAAGCTTATCG 685
consensus_6465#2 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||