These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_648#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [ATTACAATCAAGAGAGGAAAAAAAAACAGAGAGAGAAAGATCAAGAGCATATAATCTATATATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGATACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCCATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGGAGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGTGCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCGCACCCGGAGCTGGTCCGGCCGTCGTCGAGGCCGGCGGCAGCACAGCGAGCCACCGCCGACGACGATGCTGCCGCCGTTCGTCAGCCGCCGGCGGTGAGCGTTGGCAGGGCGGCAGCCATGGTTTTGCAGAGCTCGGGGTGTAGGAGCGATGTGGAGGTGGACACCTCGCTTCACTTGTGAAGAAGTGAAAATTAAGTAGATAGCTAGTAGTAGCTAGATGCTTATTTAGCTCGGCCGAATTAATCATTTTTTCCCCCCTTTGATCCTTCTAGTTCTTGTTTTTCTCTTGATCGATCACATCTTGTATGCGCTCGTGGATGCTGTCGAATTTGAATTAATTTG] [+] EMBL AK108642 [ATTACAATCAAGAGAGGAAAAAAAAACAGAGAGAGAAAGATCAAGAGCATATAATCTATATATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGATACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCCATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGGAGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGTGCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCGCACCCGGAGCTGGTCCGGCCGTCGTCGAGGCCGGCGGCAGCACAGCGAGCCACCGCCGACGACGATGCTGCCGCCGTTCGTCAGCCGCCGGCGGTGAGCGTTGGCAGGGCGGCAGCCATGGTTTTGCAGAGCTCGGGGTGTAGGAGCGATGTGGAGGTGGACACCTCGCTTCACTTGTGAAGAAGTGAAAATTAAGTAGATAGCTAGTAGTAGCTAGATGCTTATTTAGCTCGGCCGAATTAATCATTTTTTCCCCCCTTTGATCCTTCTAGTTCTTGTTTTTCTCTTGATCGATCACATCTTGTATGCGCTCGTGGATGCTGTCGAATTTGAATTAATTTG] consensusID : consensus_648#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [GAGAGAGAAAGATCAAGAGCATATAATCTATATATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGATACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCCATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGGAGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGTGCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCGCACCCGGAGCTGGTCCGGCCGTCGTCGAGGGCGGCGGCAGCACAGCGAGGCACCGCCGACGACGATGCTGCCGCCGTTCGTCAGCCGCCCGCGTTGAACGTTGGCAAGGCGCCAGCCATGGTTTTGCAGAGCTCGGGGTGTAAGACGATGTGGAGGTGGACACTCGCTTCCCTTGGAAGAAGGGAAATTATTTAATGGTTGTAGAACTAAATGTTATTAACTCGGCGAATAATCATTTTTCCCCCTTTGACCTCCAGACTGGT] [+] EMBL CA755236 [GAGAGAGAAAGATCAAGAGCATATAATCTATATATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGATACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCCATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGGAGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGTGCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCGCACCCGGAGCTGGTCCGGCCGTCGTCGAGGGCGGCGGCAGCACAGCGAGGCACCGCCGACGACGATGCTGCCGCCGTTCGTCAGCCGCCCGCGTTGAACGTTGGCAAGGCGCCAGCCATGGTTTTGCAGAGCTCGGGGTGTAAGACGATGTGGAGGTGGACACTCGCTTCCCTTGGAAGAAGGGAAATTATTTAATGGTTGTAGAACTAAATGTTATTAACTCGGCGAATAATCATTTTTCCCCCTTTGACCTCCAGACTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_648#0 ATTACAATCAAGAGAGGAAAAAAAAACAGAGAGAGAAAGATCAAGAGCATATAATCTATA 60 consensus_648#1 ----------------------------GAGAGAGAAAGATCAAGAGCATATAATCTATA 32 ******************************** consensus_648#0 TATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGA 120 consensus_648#1 TATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGA 92 ************************************************************ consensus_648#0 TACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCC 180 consensus_648#1 TACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCC 152 ************************************************************ consensus_648#0 ATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGG 240 consensus_648#1 ATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGG 212 ************************************************************ consensus_648#0 AGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGT 300 consensus_648#1 AGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGT 272 ************************************************************ consensus_648#0 GCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCG 360 consensus_648#1 GCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCG 332 ************************************************************ consensus_648#0 CACCCGGAGCTGGTCCGGCCGTCGTCGAGGCCGGCGGCAGCACAGCGAGCCACCGCCGAC 420 consensus_648#1 CACCCGGAGCTGGTCCGGCCGTCGTCGAGGGCGGCGGCAGCACAGCGAGGCACCGCCGAC 392 ****************************** ****************** ********** consensus_648#0 GACGATGCTGCCGCCGTTCGTCAGCCGCCGGCGGTGAGCGTTGGCAGGGCGGCAGCCATG 480 consensus_648#1 GACGATGCTGCCGCCGTTCGTCAGCCGCCCGCGTTGAACGTTGGCAAGGCGCCAGCCATG 452 ***************************** *** *** ******** **** ******** consensus_648#0 GTTTTGCAGAGCTCGGGGTGTAGGAGCGATGTGGAGGTGGACACCTCGCTTCACTTGTGA 540 consensus_648#1 GTTTTGCAGAGCTCGGGGTGTAAGA-CGATGTGGAGGTGGACAC-TCGCTTCCCTTG-GA 509 ********************** ** ****************** ******* **** ** consensus_648#0 AGAAGTGAAAATTAAGTAGATAGCTAGTAGTAGCTAGATGCTTATTTAGCTCGGCCGAAT 600 consensus_648#1 AGAAG-GGAAATTATTTA-ATGGTT-GTAG-AACTAAATGTTA--TTAACTCGGC--GAA 561 ***** * ****** ** ** * * **** * *** *** * *** ****** * consensus_648#0 TAATCATTTTTTCCCCCCTTTGATCCTTCTAGTTCTTGTTTTTCTCTTGATCGATCACAT 660 consensus_648#1 TAATCATTTTT--CCCCCTTTGA-CCTCCAGACTGGT----------------------- 595 *********** ********** *** * * * consensus_648#0 CTTGTATGCGCTCGTGGATGCTGTCGAATTTGAATTAATTTG 702 consensus_648#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||