These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1334 fasta sequence [CAGAAGTCCAGAATCGAATAAGTAAAAGACAAAATCAAAAATTCAGACCAAAAAAAAAATCAGAGAAATGAAAAGAGGCTGAGCAACAACTCACCTCACGGCGGCAATGGGCCTCCTCGTCCACCTCCCCAACCTCGCCGGCGCCCGCCGCCCATCGCCGTGCGGCGGCCACCGGAGGGCCCGCGGCGGCGCGCGGTTCTCGGTGTCCGCCGCGGCGCCCGGCGGGGGCGTCAAGGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGAAGGGGACGAGGGGGAAGGAGAGAATAGTGATTCGGGTGTCGGACCCGGTGCGGGAGAGGCGGCTCCCGCCGCCGCTCTTCTCGTCCCCGGACGCCCCCTCGCCGGCGGCGGGGCGGCGGCGGAGGAAGGGGGAGGACGAGGACGACGGGGAGGACCGGCGGCGGCGGTACCACGTCAACGTCGGGGACGCCATCCGGGCGCTGCGGGAGGAGCTCCCCGCCGCGTTCTACCGGGAGCCCAGCTTCCATATCTACAGAGATGATATTGTCTTCAAAGATCCTATCAATAATTTCACGGGTATTGATAACTACAAAAGGATATTCTGGGCTCTACGGTTTACTGGGCAAATTTTCTTCAAAGCACTATGGATCGACATTATCAGCATATGGCAGCCTGTCGAGGATGTAATCATGATCCGCTGGATTGTCCATGGCATTCCTAGAGTTCTCTCGGATGGCCCTGGCAGATTTGAAGGCACCTCAGAGTATAAGTTTGACAAGAATGGGAAGATCTATGAGCATAAGGTTGATAATGTTGCCAAGAACACACCAACGAAATTTAAGGTCTTGCCAGTCGTAGAGCTCATCAGATCACTTGGATGCCCATCTACTCCAAAACCAACATATTTTGAGACGTCGTCCCTACAGCTAATATCGCTCTTGCCATTCTGGTTCAAATTGACTTGGATGAGATGCTACTTGTCATTGTACCTTATCCTAGCAAATTTATCAAAAGGATGAGGATCGATGGTTGAGGTCCAACCCAATGCCTCTAAATTTTGCCCTTCCATTGTATGGTAGTGTATACCTTTGAGCAGCTCGCCAATACCTACATGTAAACGATTTTGTTTGTGTACAGCTCAAAGTTTCTGTCTAGGAATGTAGGCATAGCTGAAGTTATTCCAAGATCTTGGCTGAGTTTTGTAAGCTGTATATTGCCCCCTACCTGGGTATGTAATCAACAGACGAGGCAAGTAAGGAAATCTTACATGCTTGCACGTTGCCTGATACTGAACTTTTTGCTATCTAATTGCAAAAGGTTTTATACCAAACCAATTAAAAAAAA] [+] EMBL AK066642 [CAGAAGTCCAGAATCGAATAAGTAAAAGACAAAATCAAAAATTCAGACCAAAAAAAAAATCAGAGAAATGAAAAGAGGCTGAGCAACAACTCACCTCACGGCGGCAATGGGCCTCCTCGTCCACCTCCCCAACCTCGCCGGCGCCCGCCGCCCATCGCCGTGCGGCGGCCACCGGAGGGCCCGCGGCGGCGCGCGGTTCTCGGTGTCCGCCGCGGCGCCCGGCGGGGGCGTCAAGGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGAAGGGGACGAGGGGGAAGGAGAGAATAGTGATTCGGGTGTCGGACCCGGTGCGGGAGAGGCGGCTCCCGCCGCCGCTCTTCTCGTCCCCGGACGCCCCCTCGCCGGCGGCGGGGCGGCGGCGGAGGAAGGGGGAGGACGAGGACGACGGGGAGGACCGGCGGCGGCGGTACCACGTCAACGTCGGGGACGCCATCCGGGCGCTGCGGGAGGAGCTCCCCGCCGCGTTCTACCGGGAGCCCAGCTTCCATATCTACAGAGATGATATTGTCTTCAAAGATCCTATCAATAATTTCACGGGTATTGATAACTACAAAAGGATATTCTGGGCTCTACGGTTTACTGGGCAAATTTTCTTCAAAGCACTATGGATCGACATTATCAGCATATGGCAGCCTGTCGAGGATGTAATCATGATCCGCTGGATTGTCCATGGCATTCCTAGAGTTCTCTCGGATGGCCCTGGCAGATTTGAAGGCACCTCAGAGTATAAGTTTGACAAGAATGGGAAGATCTATGAGCATAAGGTTGATAATGTTGCCAAGAACACACCAACGAAATTTAAGGTCTTGCCAGTCGTAGAGCTCATCAGATCACTTGGATGCCCATCTACTCCAAAACCAACATATTTTGAGACGTCGTCCCTACAGCTAATATCGCTCTTGCCATTCTGGTTCAAATTGACTTGGATGAGATGCTACTTGTCATTGTACCTTATCCTAGCAAATTTATCAAAAGGATGAGGATCGATGGTTGAGGTCCAACCCAATGCCTCTAAATTTTGCCCTTCCATTGTATGGTAGTGTATACCTTTGAGCAGCTCGCCAATACCTACATGTAAACGATTTTGTTTGTGTACAGCTCAAAGTTTCTGTCTAGGAATGTAGGCATAGCTGAAGTTATTCCAAGATCTTGGCTGAGTTTTGTAAGCTGTATATTGCCCCCTACCTGGGTATGTAATCAACAGACGAGGCAAGTAAGGAAATCTTACATGCTTGCACGTTGCCTGATACTGAACTTTTTGCTATCGAATTGCAAAAGGTTTT ] [-] EMBL CF330683 [ AGGTCTTGCCAGTCGTAGAGCTCATCAGATCACTTGGATGCCCATCTACTCCAAAACCAACATATTTTGAGACGTCGTCCCTACAGCTAATATCGCTCTTGCCATTCTGGTTCAAATTGACTTGGATGAGATGCTACTTGTCATTGTACCTTATCCTAGCAAATTTATCAAAAGGATGAGGATCGATGGTTGAGGTCCAACCCAATGCCTCTAAATTTTGCCCTTCCATTGTATGGTAGTGTATACCTTTGAGCAGCTCGCCAATACCTACATGTAAACGATTTTGTTTGTGTACAGCTCAAAGTTTCTGTCTAGGAATGTAGGCATAGCTGAAGTTATTCCAAGATCTTGGCTGAGTTTTGTAAGCTGTATATTGCCCCCTACCTGGGTATGTAATCAACAGACGAGGCAAGTAAGGAAATCTTACCTGCTTGCACGTTGCCTGATACTGAACTTTTTGCTATCTAATTGCAAAAGGTTTTATACCAAACCAATTAAAAAAAA] [+] EMBL CF330684 [ TAGCAAATTTATCAAAAGGATGAGGAGCGATGGTTGAGGCCCAACCCAATGCCTCTAAATTTTGCCCTTCCATTGTATGGTAGTGTATACCTTTGAGCAGCTCGCCAATACCTACATGTAAACGATTTTGTTTGTGTACAGCTCAAAGTTTCTGTCTAGGAATGTAGGCATAGCTGAAGTTATTCCAAGATCTTGGCTGAGTTTTGTAAGCTGTATATTGCCCCCTACCTGGGTATGTAATCAACAGACGAGGCAAGTAAGGAAATCTTACATGCTTGCACGTTGCCTGATACTGAACTTTTTGCTATCTAATTGCAAAAGGTTTTATACCAAACCAATTAAAAAAA ] consensusID : consensus_6483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 825 fasta sequence [NNNNNNTNNTCGGCCGAGCTCGTGCCGAATTCGGCACGANGTTGCCAAGAAACACACCAACGAAATTTTNGGTCTTGCCAGTCGTAGAGCTCATCAGATCNCTTGGATGCCCATCTACTCCAAAACCAACATATTTTGAGACGTCGTCCCTACAGCTAATATCGCTCTTGCCATTCTGGTTCAAATTGACTTGGATGAGATGCTACTTGTCATTGTACCTTATCCTACCAAATTTATCAAAAGGATGAGGATCGATGGTTGAGGTCCNACCCAATGCCTCTAAATTTTGCCCTTCCATTGTATGGTAGTGTATACCTTTGAGCAGCTCGCCNATACCTACATGTAAACGATTTTGTTTGTGTACAGCTCAAAGTTTCTGTCTANGAATGTTGGCNTTTNTNTNATTTNTTCCAANATCTNGGCTGANTTTTGTAANCTGTATNTTCGCCCCCTNCCTGGGTTTGTTNTCNACANACAAAGCNAGTTGGAAATCTTACCTGCTTGCACNTTGCCTGATACTGAACTTTTTGCTNTCNAATTGCNANAGGTNTGGTCCNNNNNNANANNNNNNNNNNNCTCNAGGGGGGGCCGGTCCCCNNTTCCCCCGATNNTGGATCNTNTTNNAANACNNTNGGNCNGNCNTNTNTNNNAANTNCNTNNCTGGGGANNANCCNGNCCTTNNCCCNANCTTNNCGCCTNNGNNNNNANNNCCCCCTTTCNGCCNGNTGGGTTNNTNNNCNNAANAGGNCCNNNNCCNNNTNGCCCTTCCCNANNNNTNNNGCNNCCCCTANTGNNCNANNNNGNAANTNNTTNNNGCNTNTNNNN] [+] EMBL BE229844 [NNNNNNTNNTCGGCCGAGCTCGTGCCGAATTCGGCACGANGTTGCCAAGAAACACACCAACGAAATTTTNGGTCTTGCCAGTCGTAGAGCTCATCAGATCNCTTGGATGCCCATCTACTCCAAAACCAACATATTTTGAGACGTCGTCCCTACAGCTAATATCGCTCTTGCCATTCTGGTTCAAATTGACTTGGATGAGATGCTACTTGTCATTGTACCTTATCCTACCAAATTTATCAAAAGGATGAGGATCGATGGTTGAGGTCCNACCCAATGCCTCTAAATTTTGCCCTTCCATTGTATGGTAGTGTATACCTTTGAGCAGCTCGCCNATACCTACATGTAAACGATTTTGTTTGTGTACAGCTCAAAGTTTCTGTCTANGAATGTTGGCNTTTNTNTNATTTNTTCCAANATCTNGGCTGANTTTTGTAANCTGTATNTTCGCCCCCTNCCTGGGTTTGTTNTCNACANACAAAGCNAGTTGGAAATCTTACCTGCTTGCACNTTGCCTGATACTGAACTTTTTGCTNTCNAATTGCNANAGGTNTGGTCCNNNNNNANANNNNNNNNNNNCTCNAGGGGGGGCCGGTCCCCNNTTCCCCCGATNNTGGATCNTNTTNNAANACNNTNGGNCNGNCNTNTNTNNNAANTNCNTNNCTGGGGANNANCCNGNCCTTNNCCCNANCTTNNCGCCTNNGNNNNNANNNCCCCCTTTCNGCCNGNTGGGTTNNTNNNCNNAANAGGNCCNNNNCCNNNTNGCCCTTCCCNANNNNTNNNGCNNCCCCTANTGNNCNANNNNGNAANTNNTTNNNGCNTNTNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6483#0 CAGAAGTCCAGAATCGAATAAGTAAAAGACAAAATCAAAAATTCAGACCAAAAAAAAAAT 60 consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 CAGAGAAATGAAAAGAGGCTGAGCAACAACTCACCTCACGGCGGCAATGGGCCTCCTCGT 120 consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 CCACCTCCCCAACCTCGCCGGCGCCCGCCGCCCATCGCCGTGCGGCGGCCACCGGAGGGC 180 consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 CCGCGGCGGCGCGCGGTTCTCGGTGTCCGCCGCGGCGCCCGGCGGGGGCGTCAAGGAGGA 240 consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 AGAGGAAGAGGAAGAGGAGGAGGAGGAGAAGGGGACGAGGGGGAAGGAGAGAATAGTGAT 300 consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 TCGGGTGTCGGACCCGGTGCGGGAGAGGCGGCTCCCGCCGCCGCTCTTCTCGTCCCCGGA 360 consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 CGCCCCCTCGCCGGCGGCGGGGCGGCGGCGGAGGAAGGGGGAGGACGAGGACGACGGGGA 420 consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 GGACCGGCGGCGGCGGTACCACGTCAACGTCGGGGACGCCATCCGGGCGCTGCGGGAGGA 480 consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 GCTCCCCGCCGCGTTCTACCGGGAGCCCAGCTTCCATATCTACAGAGATGATATTGTCTT 540 consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 CAAAGATCCTATCAATAATTTCACGGGTATTGATAACTACAAAAGGATATTCTGGGCTCT 600 consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 ACGGTTTACTGGGCAAATTTTCTTCAAAGCACTATGGATCGACATTATCAGCATATGGCA 660 consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 GCCTGTCGAGGATGTAATCATGATCCGCTGGATTGTCCATGGCATTCCTAGAGTTCTCTC 720 consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 GGATGGCCCTGGCAGATTTGAAGGCACCTCAGAGTATAAGTTTGACAAGAATGGGAAGAT 780 consensus_6483#1 ------------------------------------------NNNNNNTNNTCGGCCGAG 18 * ** ** consensus_6483#0 CTATGAGCATAAGGTTG-ATAATGTTGCCAAGAA-CACACCAACGAAATTTAAGGTCTTG 838 consensus_6483#1 CT-CGTGCCGAATTCGGCACGANGTTGCCAAGAAACACACCAACGAAATTTTNGGTCTTG 77 ** * ** ** * * * *********** **************** ******* consensus_6483#0 CCAGTCGTAGAGCTCATCAGATCACTTGGATGCCCATCTACTCCAAAACCAACATATTTT 898 consensus_6483#1 CCAGTCGTAGAGCTCATCAGATCNCTTGGATGCCCATCTACTCCAAAACCAACATATTTT 137 *********************** ************************************ consensus_6483#0 GAGACGTCGTCCCTACAGCTAATATCGCTCTTGCCATTCTGGTTCAAATTGACTTGGATG 958 consensus_6483#1 GAGACGTCGTCCCTACAGCTAATATCGCTCTTGCCATTCTGGTTCAAATTGACTTGGATG 197 ************************************************************ consensus_6483#0 AGATGCTACTTGTCATTGTACCTTATCCTAGCAAATTTATCAAAAGGATGAGGATCGATG 1018 consensus_6483#1 AGATGCTACTTGTCATTGTACCTTATCCTACCAAATTTATCAAAAGGATGAGGATCGATG 257 ****************************** ***************************** consensus_6483#0 GTTGAGGTCCAACCCAATGCCTCTAAATTTTGCCCTTCCATTGTATGGTAGTGTATACCT 1078 consensus_6483#1 GTTGAGGTCCNACCCAATGCCTCTAAATTTTGCCCTTCCATTGTATGGTAGTGTATACCT 317 ********** ************************************************* consensus_6483#0 TTGAGCAGCTCGCCAATACCTACATGTAAACGATTTTGTTTGTGTACAGCTCAAAGTTTC 1138 consensus_6483#1 TTGAGCAGCTCGCCNATACCTACATGTAAACGATTTTGTTTGTGTACAGCTCAAAGTTTC 377 ************** ********************************************* consensus_6483#0 TGTCTAGGAATGTAGGCATAGCTG-AAGTTATTCCAAGATCTTGGCTGAGTTTTGTAAGC 1197 consensus_6483#1 TGTCTANGAATGTTGGCNTTTNTNTNATTTNTTCCAANATCTNGGCTGANTTTTGTAANC 437 ****** ****** *** * * * ** ****** **** ****** ******** * consensus_6483#0 TGTATATT-GCCCCCTACCTGGGTATGTAATCAACAGACGAGGCAAGTAAGGAAATCTTA 1256 consensus_6483#1 TGTATNTTCGCCCCCTNCCTGGGTTTGTTNTCNACANACAAAGCNAGTT-GGAAATCTTA 496 ***** ** ******* ******* *** ** *** ** * ** *** ********** consensus_6483#0 CATGCTTGCACGTTGCCTGATACTGAACTTTTTGCTATCTAATTGCAAAAGGTTTTATAC 1316 consensus_6483#1 CCTGCTTGCACNTTGCCTGATACTGAACTTTTTGCTNTCNAATTGCNANAGGTNTGGTCC 556 * ********* ************************ ** ****** * **** * * * consensus_6483#0 CAAACCAATTAAAAAAAA------------------------------------------ 1334 consensus_6483#1 NNNNNNANANNNNNNNNNNNCTCNAGGGGGGGCCGGTCCCCNNTTCCCCCGATNNTGGAT 616 * consensus_6483#0 ------------------------------------------------------------ consensus_6483#1 CNTNTTNNAANACNNTNGGNCNGNCNTNTNTNNNAANTNCNTNNCTGGGGANNANCCNGN 676 consensus_6483#0 ------------------------------------------------------------ consensus_6483#1 CCTTNNCCCNANCTTNNCGCCTNNGNNNNNANNNCCCCCTTTCNGCCNGNTGGGTTNNTN 736 consensus_6483#0 ------------------------------------------------------------ consensus_6483#1 NNCNNAANAGGNCCNNNNCCNNNTNGCCCTTCCCNANNNNTNNNGCNNCCCCTANTGNNC 796 consensus_6483#0 ----------------------------- consensus_6483#1 NANNNNGNAANTNNTTNNNGCNTNTNNNN 825 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||