These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1387 fasta sequence [TGTTGCCCTCGAAGCCCACGCGCCAGCGAGCACGGCCCGGCCTCGCCGTCGCCGGCGAGCGGCCGCGCCGCCATCGCGGAAGACGCCCGAGTCGCAGGCGCTCCGCTCCATACTCCACTCGCGCGTCATTGCCTGCCTCCGCGCACAAGACGGGGAGACGGCGATGCAGGCGGCCCGTGCGGCCGTGCGCGGCGGCGTCTCCGTGCTAGAGATTGTGATGTCCACCCCTGGAGCGCTGGAGGTTATTGGTGATCTTCGCAGAAGTTATCCTTCTTTGACATTTGGGGTTGGCACGGTCTTGAATCCTGAAGATGCAAGGAAAGCCATTACAGCTGGTGCACAGTTTCTCATGAGTCCTGGTACAGTCATGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAGGAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGGTCTACCCAGTTTCAGTAATGGGTGGGGAGGTCTATATGCTTGCTTTGAAGAAACCATTTCCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTGGAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAATCAGGAACATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGAACATGGGCACCCATTTTGCTCGGTATGATTGAGCCATGATGAGCAGTTGTTTTTCCCGGCATGATTGACGGCCATTCTCTCTGTGATCTGCATGAGGATAGCTCGAGAAGTGATCAAATTCAAGCCCTAACATTATGAGGAATTGAGGATATCTAGAGAAGTAATCAAGTTCAAGCCCTAGCACTGTGTTCCTCAACAGAAGTCATGGGCACTGGTGGTCTGGCAAAGAAGTGATATAAAATCTCCGAGCTAGCTACGACAAGTGCTGAGTCCATATCTGAGAACTCAAATGGAAGCAGTGGAGAGTCGCATTTGCATTTGACGAAATGGAAGCACCAACATCTTGTCAGTTAATCAGTTACTGTTATGCAGATTGCTAAAAGGAATCTGGAGTTACAGATCGTGGCACTACGTGGTTTGCCATCTTTTTGTAGATTCAATGCTCCTTAGGTATACTCTCTAATAGAACAGGTACTGTTGTCTCTATAGCTTGTGTAAATACTCCATCTAATGTTATAAGGAACAATTTTACTTGATGCATGTCCTAGGGAGGCAACTCCTGTAAAACTAAAGGGACGGCCTCAGTCA] [+] EMBL CB645569 [TGTTGCCCTCGAAGCCCACGCGCCAGCGAGCACGGCCCGGCCTCGCCGTCGCCGGCGAGCGGCCGCGCCGCCATCGCGGAAGACGCCCGAGTCGCAGGCGCTCCGCTCCATACTCCACTCGCGCGTCATTGCCTGCCTCCGCGCACAAGACGGGGAGACGGCGATGCAGGCGGCCCGTGCGGCCGTGCGCGGCGGCGTCTCCGTGCTAGAGATTGTGATGTCCACCCCTGGAGCGCTGGAGGTTATTGGTGATCTTCGCAGAAGTTATCCTTCTTTGACATTTGGGGTTGGCACGGTCTTGAATCCTGAAGATGCAAGGAAAGCCATTACAGCTGGTGCACAGTTTCTCATGAGTCCTGGTACAGTCATGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAGGAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGGTCTACCCAGTTTCAGTAATGGGTGGGGAGGTCTATATGCTTGCTTTGAAGAAACCATTTCCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTGGAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAATCAGGAACATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGAACATGGGCACC ] [-] EMBL CB645570 [ TTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAATCAGGAACATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGACAATGGGCACCCATTTTGCTCGGTATGATTGAGCCATGATGAGCAGTTGTTTTTCCCGGCATGATTGACGGCCATTCTCTCTGTGATCTGCATGAGGATAGCTCGAGAAGTGATCAAATTCAAGCCCTAACATTATGAGGAATTGAGGATATCTAGAGAAGTAATCAAGTTCAAGCCCTAGCACTGTGTTCCTCAACAGAAGTCATGGGCACTGGTGGTCTGGCAAAGAAGTGATATAAAATCTCCGAGCTAGCTACGACAAGTGCTGAGTCCATATCTGAGAACTCAAATGGAAGCAGTGGAGAGTCGCATTTGCATTTGACGAAATGGAAGCACCAACATCTTGTCAGTTAATCAGTTACTGTTATGCAGATTGCTAAAAGGAATCTGGAGTTACAGATCGTGGCACTACGTGGTTTGCCATCTTTTTGTAGATTCAATGCTCCTTAGGTATACTCTCTAATAGAACAGGTACTGTTGTCTCTATAGCTTGTGTAAATACTCCATCTAATGTTATAAGGAACAATTTTACTTGATGCATGTCCTAGGGAGGCAACTCCTGTAAAACTAAAGGGACGGCCTCAGTCA] consensusID : consensus_6501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 644 fasta sequence [CTTCATAATGAATTTAATTTGGCAAGTTTGATCCAATTTCAGTCTGTGCTTTGATGTACTTAGTGGGACACACTACTTAATACTTGCATATTATCATTATACATCTAAGCTGATTGATTCTTGCATATTGTATTTGTGTAAGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAGGAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGGTCTACCCAGTTTCAGTGATGGGTGGGNGAGGTCTATATGCTTGCATTGAAGAAACCATTTCCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTGGAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAATCAGGAACAATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGACAATGGGCACCCATTTTGCTCGGTATGATTGAGCCATGATGAGCAGTTGTTTTTCCCGGCAAAAAAAAAAA] [+] EMBL CF331491 [CTTCATAATGAATTTAATTTGGCAAGTTTGATCCAATTTCAGTCTGTGCTTTGATGTACTTAGTGGGACACACTACTTAATACTTGCATATTATCATTATACATCTAAGCTGATTGATTCTTGCATATTGTATTTGTGTAAGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAGGAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGGTCTACCCAGTTTCAGTGATGGGTGGGNGAGGTCTATATGCTTGCATTGAAGAAACCATTTCCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTGGAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAATCAGGAACAATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGACAATGGGCACCCATTTTGCTCGGTATGATTGAGCCAT ] [-] EMBL CF331490 [ GTATTTGTGTAAGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAGGAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGGTCTACCCAGTTTCAGTGATGGGTGGG GAGGTCTATATGCTTGCATTGAAGAAACCATTTCCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTGGAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTTTACGGGCATCGCAATCAGGAAC ATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGACAATGGGCACCCATTTTGCTCGGTATGATTGAGCCATGATGAGCAGTTGTTTTTCCCGGCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6501#0 TGTTGCCCTCGAAGCCCACGCGCCAGCGAGCACGGCCCGGCCTCGCCGTCGCCGGCGAGC 60 consensus_6501#1 ------------------------------------------------------------ consensus_6501#0 GGCCGCGCCGCCATCGCGGAAGACGCCCGAGTCGCAGGCGCTCCGCTCCATACTCCACTC 120 consensus_6501#1 ------------------------------------------------------------ consensus_6501#0 GCGCGTCATTGCCTGCCTCCGCGCACAAGACGGGGAGACGGCGATGCAGGCGGCCCGTGC 180 consensus_6501#1 ------------------------------------------------------------ consensus_6501#0 GGCCGTGCGCGGCGGCGTCTCCGTGCTAGAGATTGTGATGTCCACCCCTGGAGCGCTGGA 240 consensus_6501#1 ---------------------------------------------CTTCATAATGAATTT 15 * * * consensus_6501#0 GGTTATTGGTGATCTTCGCAGAAGTT--ATCCTT-CTTTGACATTTGGGGTTGG-CACGG 296 consensus_6501#1 AAT--TTGGCAAGTTTGATCCAATTTCAGTCTGTGCTTTGATGTACTTAGTGGGACACAC 73 * **** * ** ** ** ** * ****** * ** ** *** consensus_6501#0 TCTTGAATCCTGAAGATGCAAGGAAAGCCATTACAGCTGGTGCACAGTTTCTCATGAGTC 356 consensus_6501#1 TACTTAATACTTGCATATTATCATTATACATCTAAGCTGATTGATTCTTGCATATT-GTA 132 * * *** ** * * *** ***** * * ** * ** ** consensus_6501#0 CTGGTACAGTCATGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAG 416 consensus_6501#1 TTTGTGTAA----GGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAG 188 * ** * *********************************************** consensus_6501#0 GAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGG 476 consensus_6501#1 GAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGG 248 ************************************************************ consensus_6501#0 TCTACCCAGTTTCAGTAATGGGTGGGG-AGGTCTATATGCTTGCTTTGAAGAAACCATTT 535 consensus_6501#1 TCTACCCAGTTTCAGTGATGGGTGGGNGAGGTCTATATGCTTGCATTGAAGAAACCATTT 308 **************** ********* **************** *************** consensus_6501#0 CCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTG 595 consensus_6501#1 CCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTG 368 ************************************************************ consensus_6501#0 GAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGA 655 consensus_6501#1 GAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGA 428 ************************************************************ consensus_6501#0 GAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAA 715 consensus_6501#1 GAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAA 488 ************************************************************ consensus_6501#0 TCAGGAACA-TGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACA 774 consensus_6501#1 TCAGGAACAATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACA 548 ********* ************************************************** consensus_6501#0 CAATATTAGTAGTCTCCTAATGCGAACATGGGCACCCATTTTGCTCGGTATGATTGAGCC 834 consensus_6501#1 CAATATTAGTAGTCTCCTAATGCGACAATGGGCACCCATTTTGCTCGGTATGATTGAGCC 608 ************************* ********************************* consensus_6501#0 ATGATGAGCAGTTGTTTTTCCCGGCATGATTGACGGCCATTCTCTCTGTGATCTGCATGA 894 consensus_6501#1 ATGATGAGCAGTTGTTTTTCCCGGCAAAAAAAAAAA------------------------ 644 ************************** * * consensus_6501#0 GGATAGCTCGAGAAGTGATCAAATTCAAGCCCTAACATTATGAGGAATTGAGGATATCTA 954 consensus_6501#1 ------------------------------------------------------------ consensus_6501#0 GAGAAGTAATCAAGTTCAAGCCCTAGCACTGTGTTCCTCAACAGAAGTCATGGGCACTGG 1014 consensus_6501#1 ------------------------------------------------------------ consensus_6501#0 TGGTCTGGCAAAGAAGTGATATAAAATCTCCGAGCTAGCTACGACAAGTGCTGAGTCCAT 1074 consensus_6501#1 ------------------------------------------------------------ consensus_6501#0 ATCTGAGAACTCAAATGGAAGCAGTGGAGAGTCGCATTTGCATTTGACGAAATGGAAGCA 1134 consensus_6501#1 ------------------------------------------------------------ consensus_6501#0 CCAACATCTTGTCAGTTAATCAGTTACTGTTATGCAGATTGCTAAAAGGAATCTGGAGTT 1194 consensus_6501#1 ------------------------------------------------------------ consensus_6501#0 ACAGATCGTGGCACTACGTGGTTTGCCATCTTTTTGTAGATTCAATGCTCCTTAGGTATA 1254 consensus_6501#1 ------------------------------------------------------------ consensus_6501#0 CTCTCTAATAGAACAGGTACTGTTGTCTCTATAGCTTGTGTAAATACTCCATCTAATGTT 1314 consensus_6501#1 ------------------------------------------------------------ consensus_6501#0 ATAAGGAACAATTTTACTTGATGCATGTCCTAGGGAGGCAACTCCTGTAAAACTAAAGGG 1374 consensus_6501#1 ------------------------------------------------------------ consensus_6501#0 ACGGCCTCAGTCA 1387 consensus_6501#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||