Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6501 cluster # 6501       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6501#0 length = 1387 sequences # 2  
consensus_6501#1 length = 644 sequences # 2  

consensusID : consensus_6501#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1387
fasta sequence
                              [TGTTGCCCTCGAAGCCCACGCGCCAGCGAGCACGGCCCGGCCTCGCCGTCGCCGGCGAGCGGCCGCGCCGCCATCGCGGAAGACGCCCGAGTCGCAGGCGCTCCGCTCCATACTCCACTCGCGCGTCATTGCCTGCCTCCGCGCACAAGACGGGGAGACGGCGATGCAGGCGGCCCGTGCGGCCGTGCGCGGCGGCGTCTCCGTGCTAGAGATTGTGATGTCCACCCCTGGAGCGCTGGAGGTTATTGGTGATCTTCGCAGAAGTTATCCTTCTTTGACATTTGGGGTTGGCACGGTCTTGAATCCTGAAGATGCAAGGAAAGCCATTACAGCTGGTGCACAGTTTCTCATGAGTCCTGGTACAGTCATGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAGGAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGGTCTACCCAGTTTCAGTAATGGGTGGGGAGGTCTATATGCTTGCTTTGAAGAAACCATTTCCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTGGAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAATCAGGAACATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGAACATGGGCACCCATTTTGCTCGGTATGATTGAGCCATGATGAGCAGTTGTTTTTCCCGGCATGATTGACGGCCATTCTCTCTGTGATCTGCATGAGGATAGCTCGAGAAGTGATCAAATTCAAGCCCTAACATTATGAGGAATTGAGGATATCTAGAGAAGTAATCAAGTTCAAGCCCTAGCACTGTGTTCCTCAACAGAAGTCATGGGCACTGGTGGTCTGGCAAAGAAGTGATATAAAATCTCCGAGCTAGCTACGACAAGTGCTGAGTCCATATCTGAGAACTCAAATGGAAGCAGTGGAGAGTCGCATTTGCATTTGACGAAATGGAAGCACCAACATCTTGTCAGTTAATCAGTTACTGTTATGCAGATTGCTAAAAGGAATCTGGAGTTACAGATCGTGGCACTACGTGGTTTGCCATCTTTTTGTAGATTCAATGCTCCTTAGGTATACTCTCTAATAGAACAGGTACTGTTGTCTCTATAGCTTGTGTAAATACTCCATCTAATGTTATAAGGAACAATTTTACTTGATGCATGTCCTAGGGAGGCAACTCCTGTAAAACTAAAGGGACGGCCTCAGTCA]

[+] EMBL CB645569             [TGTTGCCCTCGAAGCCCACGCGCCAGCGAGCACGGCCCGGCCTCGCCGTCGCCGGCGAGCGGCCGCGCCGCCATCGCGGAAGACGCCCGAGTCGCAGGCGCTCCGCTCCATACTCCACTCGCGCGTCATTGCCTGCCTCCGCGCACAAGACGGGGAGACGGCGATGCAGGCGGCCCGTGCGGCCGTGCGCGGCGGCGTCTCCGTGCTAGAGATTGTGATGTCCACCCCTGGAGCGCTGGAGGTTATTGGTGATCTTCGCAGAAGTTATCCTTCTTTGACATTTGGGGTTGGCACGGTCTTGAATCCTGAAGATGCAAGGAAAGCCATTACAGCTGGTGCACAGTTTCTCATGAGTCCTGGTACAGTCATGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAGGAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGGTCTACCCAGTTTCAGTAATGGGTGGGGAGGTCTATATGCTTGCTTTGAAGAAACCATTTCCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTGGAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAATCAGGAACATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGAACATGGGCACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB645570             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAATCAGGAACATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGACAATGGGCACCCATTTTGCTCGGTATGATTGAGCCATGATGAGCAGTTGTTTTTCCCGGCATGATTGACGGCCATTCTCTCTGTGATCTGCATGAGGATAGCTCGAGAAGTGATCAAATTCAAGCCCTAACATTATGAGGAATTGAGGATATCTAGAGAAGTAATCAAGTTCAAGCCCTAGCACTGTGTTCCTCAACAGAAGTCATGGGCACTGGTGGTCTGGCAAAGAAGTGATATAAAATCTCCGAGCTAGCTACGACAAGTGCTGAGTCCATATCTGAGAACTCAAATGGAAGCAGTGGAGAGTCGCATTTGCATTTGACGAAATGGAAGCACCAACATCTTGTCAGTTAATCAGTTACTGTTATGCAGATTGCTAAAAGGAATCTGGAGTTACAGATCGTGGCACTACGTGGTTTGCCATCTTTTTGTAGATTCAATGCTCCTTAGGTATACTCTCTAATAGAACAGGTACTGTTGTCTCTATAGCTTGTGTAAATACTCCATCTAATGTTATAAGGAACAATTTTACTTGATGCATGTCCTAGGGAGGCAACTCCTGTAAAACTAAAGGGACGGCCTCAGTCA]


>consensus_6501#0 TGTTGCCCTCGAAGCCCACGCGCCAGCGAGCACGGCCCGGCCTCGCCGTCGCCGGCGAGC GGCCGCGCCGCCATCGCGGAAGACGCCCGAGTCGCAGGCGCTCCGCTCCATACTCCACTC GCGCGTCATTGCCTGCCTCCGCGCACAAGACGGGGAGACGGCGATGCAGGCGGCCCGTGC GGCCGTGCGCGGCGGCGTCTCCGTGCTAGAGATTGTGATGTCCACCCCTGGAGCGCTGGA GGTTATTGGTGATCTTCGCAGAAGTTATCCTTCTTTGACATTTGGGGTTGGCACGGTCTT GAATCCTGAAGATGCAAGGAAAGCCATTACAGCTGGTGCACAGTTTCTCATGAGTCCTGG TACAGTCATGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAGGAGT GCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGGTCTA CCCAGTTTCAGTAATGGGTGGGGAGGTCTATATGCTTGCTTTGAAGAAACCATTTCCTTT TCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTGGAGGC AGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGAGAAAG GAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAATCAGG AACATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATAT TAGTAGTCTCCTAATGCGAACATGGGCACCCATTTTGCTCGGTATGATTGAGCCATGATG AGCAGTTGTTTTTCCCGGCATGATTGACGGCCATTCTCTCTGTGATCTGCATGAGGATAG CTCGAGAAGTGATCAAATTCAAGCCCTAACATTATGAGGAATTGAGGATATCTAGAGAAG TAATCAAGTTCAAGCCCTAGCACTGTGTTCCTCAACAGAAGTCATGGGCACTGGTGGTCT GGCAAAGAAGTGATATAAAATCTCCGAGCTAGCTACGACAAGTGCTGAGTCCATATCTGA GAACTCAAATGGAAGCAGTGGAGAGTCGCATTTGCATTTGACGAAATGGAAGCACCAACA TCTTGTCAGTTAATCAGTTACTGTTATGCAGATTGCTAAAAGGAATCTGGAGTTACAGAT CGTGGCACTACGTGGTTTGCCATCTTTTTGTAGATTCAATGCTCCTTAGGTATACTCTCT AATAGAACAGGTACTGTTGTCTCTATAGCTTGTGTAAATACTCCATCTAATGTTATAAGG AACAATTTTACTTGATGCATGTCCTAGGGAGGCAACTCCTGTAAAACTAAAGGGACGGCC TCAGTCA



consensusID : consensus_6501#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 644
fasta sequence
                              [CTTCATAATGAATTTAATTTGGCAAGTTTGATCCAATTTCAGTCTGTGCTTTGATGTACTTAGTGGGACACACTACTTAATACTTGCATATTATCATTATACATCTAAGCTGATTGATTCTTGCATATTGTATTTGTGTAAGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAGGAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGGTCTACCCAGTTTCAGTGATGGGTGGGNGAGGTCTATATGCTTGCATTGAAGAAACCATTTCCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTGGAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAATCAGGAACAATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGACAATGGGCACCCATTTTGCTCGGTATGATTGAGCCATGATGAGCAGTTGTTTTTCCCGGCAAAAAAAAAAA]

[+] EMBL CF331491             [CTTCATAATGAATTTAATTTGGCAAGTTTGATCCAATTTCAGTCTGTGCTTTGATGTACTTAGTGGGACACACTACTTAATACTTGCATATTATCATTATACATCTAAGCTGATTGATTCTTGCATATTGTATTTGTGTAAGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAGGAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGGTCTACCCAGTTTCAGTGATGGGTGGGNGAGGTCTATATGCTTGCATTGAAGAAACCATTTCCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTGGAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAATCAGGAACAATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGACAATGGGCACCCATTTTGCTCGGTATGATTGAGCCAT                                  ]
[-] EMBL CF331490             [                                                                                                                                 GTATTTGTGTAAGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAGGAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGGTCTACCCAGTTTCAGTGATGGGTGGG GAGGTCTATATGCTTGCATTGAAGAAACCATTTCCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTGGAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTTTACGGGCATCGCAATCAGGAAC ATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGACAATGGGCACCCATTTTGCTCGGTATGATTGAGCCATGATGAGCAGTTGTTTTTCCCGGCAAAAAAAAAAA]


>consensus_6501#1 CTTCATAATGAATTTAATTTGGCAAGTTTGATCCAATTTCAGTCTGTGCTTTGATGTACT TAGTGGGACACACTACTTAATACTTGCATATTATCATTATACATCTAAGCTGATTGATTC TTGCATATTGTATTTGTGTAAGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTG TATTCCAGGAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGT CGTTAAGGTCTACCCAGTTTCAGTGATGGGTGGGNGAGGTCTATATGCTTGCATTGAAGA AACCATTTCCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGG GGTATTTGGAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAAT TGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGG CATCGCAATCAGGAACAATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAA GAAGAACACAATATTAGTAGTCTCCTAATGCGACAATGGGCACCCATTTTGCTCGGTATG ATTGAGCCATGATGAGCAGTTGTTTTTCCCGGCAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6501#0      TGTTGCCCTCGAAGCCCACGCGCCAGCGAGCACGGCCCGGCCTCGCCGTCGCCGGCGAGC 60
consensus_6501#1      ------------------------------------------------------------
                                                                                  

consensus_6501#0      GGCCGCGCCGCCATCGCGGAAGACGCCCGAGTCGCAGGCGCTCCGCTCCATACTCCACTC 120
consensus_6501#1      ------------------------------------------------------------
                                                                                  

consensus_6501#0      GCGCGTCATTGCCTGCCTCCGCGCACAAGACGGGGAGACGGCGATGCAGGCGGCCCGTGC 180
consensus_6501#1      ------------------------------------------------------------
                                                                                  

consensus_6501#0      GGCCGTGCGCGGCGGCGTCTCCGTGCTAGAGATTGTGATGTCCACCCCTGGAGCGCTGGA 240
consensus_6501#1      ---------------------------------------------CTTCATAATGAATTT 15
                                                                   *     *  *     

consensus_6501#0      GGTTATTGGTGATCTTCGCAGAAGTT--ATCCTT-CTTTGACATTTGGGGTTGG-CACGG 296
consensus_6501#1      AAT--TTGGCAAGTTTGATCCAATTTCAGTCTGTGCTTTGATGTACTTAGTGGGACACAC 73
                        *  ****  *  **     ** **   **  * ******  *     ** ** ***  

consensus_6501#0      TCTTGAATCCTGAAGATGCAAGGAAAGCCATTACAGCTGGTGCACAGTTTCTCATGAGTC 356
consensus_6501#1      TACTTAATACTTGCATATTATCATTATACATCTAAGCTGATTGATTCTTGCATATT-GTA 132
                      *  * *** **        *     *  ***   ***** *  *   ** *  **  ** 

consensus_6501#0      CTGGTACAGTCATGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAG 416
consensus_6501#1      TTTGTGTAA----GGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAG 188
                       * **  *     ***********************************************

consensus_6501#0      GAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGG 476
consensus_6501#1      GAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGG 248
                      ************************************************************

consensus_6501#0      TCTACCCAGTTTCAGTAATGGGTGGGG-AGGTCTATATGCTTGCTTTGAAGAAACCATTT 535
consensus_6501#1      TCTACCCAGTTTCAGTGATGGGTGGGNGAGGTCTATATGCTTGCATTGAAGAAACCATTT 308
                      **************** *********  **************** ***************

consensus_6501#0      CCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTG 595
consensus_6501#1      CCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTG 368
                      ************************************************************

consensus_6501#0      GAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGA 655
consensus_6501#1      GAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGA 428
                      ************************************************************

consensus_6501#0      GAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAA 715
consensus_6501#1      GAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAA 488
                      ************************************************************

consensus_6501#0      TCAGGAACA-TGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACA 774
consensus_6501#1      TCAGGAACAATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACA 548
                      ********* **************************************************

consensus_6501#0      CAATATTAGTAGTCTCCTAATGCGAACATGGGCACCCATTTTGCTCGGTATGATTGAGCC 834
consensus_6501#1      CAATATTAGTAGTCTCCTAATGCGACAATGGGCACCCATTTTGCTCGGTATGATTGAGCC 608
                      *************************  *********************************

consensus_6501#0      ATGATGAGCAGTTGTTTTTCCCGGCATGATTGACGGCCATTCTCTCTGTGATCTGCATGA 894
consensus_6501#1      ATGATGAGCAGTTGTTTTTCCCGGCAAAAAAAAAAA------------------------ 644
                      **************************  *   *                           

consensus_6501#0      GGATAGCTCGAGAAGTGATCAAATTCAAGCCCTAACATTATGAGGAATTGAGGATATCTA 954
consensus_6501#1      ------------------------------------------------------------
                                                                                  

consensus_6501#0      GAGAAGTAATCAAGTTCAAGCCCTAGCACTGTGTTCCTCAACAGAAGTCATGGGCACTGG 1014
consensus_6501#1      ------------------------------------------------------------
                                                                                  

consensus_6501#0      TGGTCTGGCAAAGAAGTGATATAAAATCTCCGAGCTAGCTACGACAAGTGCTGAGTCCAT 1074
consensus_6501#1      ------------------------------------------------------------
                                                                                  

consensus_6501#0      ATCTGAGAACTCAAATGGAAGCAGTGGAGAGTCGCATTTGCATTTGACGAAATGGAAGCA 1134
consensus_6501#1      ------------------------------------------------------------
                                                                                  

consensus_6501#0      CCAACATCTTGTCAGTTAATCAGTTACTGTTATGCAGATTGCTAAAAGGAATCTGGAGTT 1194
consensus_6501#1      ------------------------------------------------------------
                                                                                  

consensus_6501#0      ACAGATCGTGGCACTACGTGGTTTGCCATCTTTTTGTAGATTCAATGCTCCTTAGGTATA 1254
consensus_6501#1      ------------------------------------------------------------
                                                                                  

consensus_6501#0      CTCTCTAATAGAACAGGTACTGTTGTCTCTATAGCTTGTGTAAATACTCCATCTAATGTT 1314
consensus_6501#1      ------------------------------------------------------------
                                                                                  

consensus_6501#0      ATAAGGAACAATTTTACTTGATGCATGTCCTAGGGAGGCAACTCCTGTAAAACTAAAGGG 1374
consensus_6501#1      ------------------------------------------------------------
                                                                                  

consensus_6501#0      ACGGCCTCAGTCA 1387
consensus_6501#1      -------------
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)