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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1846 fasta sequence
[TCTCCCGACGCCTCCGACCTCGCCGCGGAAAGCTTCTCCATCGATCGATCTCTCCTCTCTCTCCCGCGGGGGCTCTCCGGCGCACGGTGCCCTCTCGTGCCTCGGAGACCCCGATCCGCCGCCGCCGCCGCCGCCGCCGTGCCTGAGTAGTACAGTCTTGTTGTCGAGGTGAGGTGAGTGGTGGGAGGAGAAATGGACACCGGGATGAGGGTGGCGCTGCACCGGCAGGTGTCGTCGGGGTCGCTGAAGGAGAGCGGGGAGCTCCGGCGGCAGTCGTCGCTGGAGTCTCCCCGGACGGGGAGGGCGGCGACGAGGTTCCTGTTCGGGAGGCAGTCGTCGATGGACCCGAACCGGCGGCGCGGGCGGAGCCAGAGCCCCGTCGGCCTCGCCGAGGACCTGACCGTGCCGGACAACCTCGACGCCACCATGCAGCTGCTCTTCCTGGCCTGCCACGGCGACGCCGCCGGCGTCGAGGCCCTGCTCCGCGGCGGCGTCGACGTCAACAGCATCAACCTCGACGGCCGCACCGCGCTGCACATCGCCTCCTGCGAGGGCCACCCCGACGTCGTCCGCGTGCTGCTCACCTGGAAGGCCAACATCGACGCCCGCGACCGGTGGGGCAGCACGGCTGTAGCTGATGCCAAGTGTTATGGCCACACGGAGGTGTACAATCTTCTCAAGGCTCGTGGTGCAAAGATCCCGAGAAACAGGAGGACACCGATGATGGTGTCGAATCCTGGGGACGTACCAGAGTACGAATTGAACCCTAGTGAGCTCCAATTCAAGAAAGGGGATGAGGTGGTCAAGGGCGTGTACCAAGTTGCCAAATGGAATGGAACCAAGGTTCATGTTAAGATACTTGATAGAGAATGCTACTGCGATCAGGAAGTCATAAACTCTTTCAGGCATGAGCTGACCGTATTGGAGAAGGTCCGGCACCCGAATGTTGTTCAGTTCGTCGGAGCCGTCACTCAGAACATACCTATGATGATTATTTCTGAATACCTCCCAAATGGTGATTTATCAAGCTGTATTCCGAGGAAAGGAAAGCTACATGGTCAGAAGGTTCTAAAATATGGCCTTGAGATCGCCAGGGGCATGACTTATCTTCACCAGTGCAAGCCAGACCCCATCATCCACTGCGACCTAAAGCCAAAAAATATCTTCCTGGATAGTGGAGGCCAACTGAAAATCGCAGGATTCGGTCTGACGAGGCTGTCGAAAATCTCTCCTGGCAGAGTGAAACTGGCCGATCATGAGTCCATGGTTGACAGCTTCAGTCACTACACTGCACCTGAGCTGTACAGAAACGAAATATTCGACGCAAGCGTCGACGCCTTCTCATTTGGTTTCATCCTCTATGAGATGGTTGAAGGAACACACACTGTACATGGGAAGTCATCAGAGGAATCTGGCCACACAATTCGATATGATGGGATGCGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGCGCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTCGACAAGATATACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGGAAATGACACGTGTGGGCTAAGCTGCATGAACGCCTTCTTGTGTACATATCACTGCGAAGCAAATGCGTCACTCTCTGTGAAGAAGAAGCCTGAGCTAGCACTCACTCGTCTGGAGGAGGATGACACGACGTACCGACAAATTTGTGTACGTGTTGTAAAAGGCCCGGCGAAAAAAAAAAGTACTTGTAAAAGATCAATTTGAGTTAAATTGGAAGTAACAAAGCTT]
[+] EMBL AK070097 [TCTCCCGACGCCTCCGACCTCGCCGCGGAAAGCTTCTCCATCGATCGATCTCTCCTCTCTCTCCCGCGGGGGCTCTCCGGCGCACGGTGCCCTCTCGTGCCTCGGAGACCCCGATCCGCCGCCGCCGCCGCCGCCGCCGTGCCTGAGTAGTACAGTCTTGTTGTCGAGGTGAGGTGAGTGGTGGGAGGAGAAATGGACACCGGGATGAGGGTGGCGCTGCACCGGCAGGTGTCGTCGGGGTCGCTGAAGGAGAGCGGGGAGCTCCGGCGGCAGTCGTCGCTGGAGTCTCCCCGGACGGGGAGGGCGGCGACGAGGTTCCTGTTCGGGAGGCAGTCGTCGATGGACCCGAACCGGCGGCGCGGGCGGAGCCAGAGCCCCGTCGGCCTCGCCGAGGACCTGACCGTGCCGGACAACCTCGACGCCACCATGCAGCTGCTCTTCCTGGCCTGCCACGGCGACGCCGCCGGCGTCGAGGCCCTGCTCCGCGGCGGCGTCGACGTCAACAGCATCAACCTCGACGGCCGCACCGCGCTGCACATCGCCTCCTGCGAGGGCCACCCCGACGTCGTCCGCGTGCTGCTCACCTGGAAGGCCAACATCGACGCCCGCGACCGGTGGGGCAGCACGGCTGTAGCTGATGCCAAGTGTTATGGCCACACGGAGGTGTACAATCTTCTCAAGGCTCGTGGTGCAAAGATCCCGAGAAACAGGAGGACACCGATGATGGTGTCGAATCCTGGGGACGTACCAGAGTACGAATTGAACCCTAGTGAGCTCCAATTCAAGAAAGGGGATGAGGTGGTCAAGGGCGTGTACCAAGTTGCCAAATGGAATGGAACCAAGGTTCATGTTAAGATACTTGATAGAGAATGCTACTGCGATCAGGAAGTCATAAACTCTTTCAGGCATGAGCTGACCGTATTGGAGAAGGTCCGGCACCCGAATGTTGTTCAGTTCGTCGGAGCCGTCACTCAGAACATACCTATGATGATTATTTCTGAATACCTCCCAAATGGTGATTTATCAAGCTGTATTCCGAGGAAAGGAAAGCTACATGGTCAGAAGGTTCTAAAATATGGCCTTGAGATCGCCAGGGGCATGACTTATCTTCACCAGTGCAAGCCAGACCCCATCATCCACTGCGACCTAAAGCCAAAAAATATCTTCCTGGATAGTGGAGGCCAACTGAAAATCGCAGGATTCGGTCTGACGAGGCTGTCGAAAATCTCTCCTGGCAGAGTGAAACTGGCCGATCATGAGTCCATGGTTGACAGCTTCAGTCACTACACTGCACCTGAGCTGTACAGAAACGAAATATTCGACGCAAGCGTCGACGCCTTCTCATTTGGTTTCATCCTCTATGAGATGGTTGAAGGAACACACACTGTACATGGGAAGTCATCAGAGGAATCTGGCCACACAATTCGATATGATGGGATGCGTCC ]
[+] EMBL AK100268 [ GGAAAGCTTCTCCATCGATCGATCTCTCCTCTCTCTCCCGCGGGGGCTCTCCGGCGCACGGTGCCCTCTCGTGCCTCGGAGACCCCGATCCGCCGCCGCCGCCGCCGCCGCCGTGCCTGAGTAGTACAGTCTTGTTGTCGAGGTGAGGTGAGTGGTGGGAGGAGAAATGGACACCGGGATGAGGGTGGCGCTGCACCGGCAGGTGTCGTCGGGGTCGCTGAAGGAGAGCGGGGAGCTCCGGCGGCAGTCGTCGCTGGAGTCTCCCCGGACGGGGAGGGCGGCGACGAGGTTCCTGTTCGGGAGGCAGTCGTCGATGGACCCGAACCGGCGGCGCGGGCGGAGCCAGAGCCCCGTCGGCCTCGCCGAGGACCTGACCGTGCCGGACAACCTCGACGCCACCATGCAGCTGCTCTTCCTGGCCTGCCACGGCGACGCCGCCGGCGTCGAGGCCCTGCTCCGCGGCGGCGTCGACGTCAACAGCATCAACCTCGACGGCCGCACCGCGCTGCACATCGCCTCCTGCGAGGGCCACCCCGACGTCGTCCGCGTGCTGCTCACCTGGAAGGCCAACATCGACGCCCGCGACCGGTGGGGCAGCACGGCTGTAGCTGATGCCAAGTGTTATGGCCACACGGAGGTGTACAATCTTCTCAAGGCTCGTGGTGCAAAGATCCCGAGAAACAGGAGGACACCGATGATGGTGTCGAATCCTGGGGACGTACCAGAGTACGAATTGAACCCTAGTGAGCTCCAATTCAAGAAAGGGGATGAGGTGGTCAAGGGCGTGTACCAAGTTGCCAAATGGAATGGAACCAAGGTTCATGTTAAGATACTTGATAGAGAATGCTACTGCGATCAGGAAGTCATAAACTCTTTCAGGCATGAGCTGACCGTATTGGAGAAGGTCCGGCACCCGAATGTTGTTCAGTTCGTCGGAGCCGTCACTCAGAACATACCTATGATGATTATTTCTGAATACCTCCCAAATGGTGATTTATCAAGCTGTATTCCGAGGAAAGGAAAGCTACATGGTCAGAAGGTTCTAAAATATGGCCTTGAGATCGCCAGGGGCATGACTTATCTTCACCAGTGCAAGCCAGACCCCATCATCCACTGCGACCTAAAGCCAAAAAATATCTTCCTGGATAGTGGAGGCCAACTGAAAATCGCAGGATTCGGTCTGACGAGGCTGTCGAAAATCTCTCCTGGCAGAGTGAAACTGGCCGATCATGAGTCCATGGTTGACAGCTTCAGTCACTACACTGCACCTGAGCTGTACAGAAACGAAATATTCGACGCAAGCGTCGACGCCTTCTCATTTGGTTTCATCCTCTATGAGATGGTTGAAGGAACACACACTGTACATGGGAAGTCATCAGAGGAATCTGGCCACACAATTCGATATGATGGGATGCGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGCGCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTCGACAAGATATACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGGAAATGACACGTGTGGGCTAAGCTGCATGAACGCCTTCTTGTGTACATATCACTGCGAAGCAAATGCGTCACTCTCTGTGAAGAAGAAGCCTGAGCTAGCACTCACTCGTCTGGAGGAGGATGACACGACGTACCGACAAATTTGTGTACGTGTTGTAAAAGGCCCGGCGAAAAAAAAAAGTACTTGTAAAAGATCAATTTGAGTTAAATTGGAAGTAACAAAGCTT]
[+] EMBL CF304686 [ tcGCA GGCTGTAGCTGATGCCAAGTGTTATGGCCACACGGAGGTGTACAATCTTCTCAAGGCTCGTGGTGCAAAGATCCCGAGAAACAGGAGGACACCGATGATGGTGTCGAATCCTGGGGACGTACCAGAGTACGAATTGAACCCTAGTGAGCTCCAATTCAAGAAAGGGGATGAGGTGGTCAAGGGCGTGTACCAAGTTGCCAAATGGAATGGAACCAAGGTTCATGTTAAGATACTTGATAGAGAATGCTACTGCGATCAGGAAGTCATAAACTCTTTCAGGCATGAGCTG ]
consensusID : consensus_6523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence
[GTCATCAGAGGAATCTGGCCACACAATTCGATATGATGGGATGCGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGCGCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTCGACAAGATATACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGGTCCGTATCTCGGCGATTTAAGAATATCAGATCTAAGCATTTCAGAACCAAAAAGAGAGTCCATGTCGCAATGTGAAAACATAATTGGAGATGGTATGTCATCATATTGTTTCATGGGATTAATTAGCGACTGAAACATTTCTTCTGCATTGCATTTGCAC]
[-] EMBL BU572396 [GTCATCAGAGGAATCTGGCCACACAATTCGATATGATGGGATGCGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGCGCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTCGACAAGATATACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGGTCCGTATCTCGGCGATTTAAGAATATCAGATCTAAGCATTTCAGAACCAAAAAGAGAGTCCATGTCGCAATGTGAAAACATAATTGGAGATGGTATGTCATCATATTGTTTCATGGGATTAATTAGCGACTGAAACATTTCTTCTGCATTGCATTTGCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6523#0 TCTCCCGACGCCTCCGACCTCGCCGCGGAAAGCTTCTCCATCGATCGATCTCTCCTCTCT 60
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 CTCCCGCGGGGGCTCTCCGGCGCACGGTGCCCTCTCGTGCCTCGGAGACCCCGATCCGCC 120
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 GCCGCCGCCGCCGCCGCCGTGCCTGAGTAGTACAGTCTTGTTGTCGAGGTGAGGTGAGTG 180
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 GTGGGAGGAGAAATGGACACCGGGATGAGGGTGGCGCTGCACCGGCAGGTGTCGTCGGGG 240
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 TCGCTGAAGGAGAGCGGGGAGCTCCGGCGGCAGTCGTCGCTGGAGTCTCCCCGGACGGGG 300
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 AGGGCGGCGACGAGGTTCCTGTTCGGGAGGCAGTCGTCGATGGACCCGAACCGGCGGCGC 360
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 GGGCGGAGCCAGAGCCCCGTCGGCCTCGCCGAGGACCTGACCGTGCCGGACAACCTCGAC 420
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 GCCACCATGCAGCTGCTCTTCCTGGCCTGCCACGGCGACGCCGCCGGCGTCGAGGCCCTG 480
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 CTCCGCGGCGGCGTCGACGTCAACAGCATCAACCTCGACGGCCGCACCGCGCTGCACATC 540
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 GCCTCCTGCGAGGGCCACCCCGACGTCGTCCGCGTGCTGCTCACCTGGAAGGCCAACATC 600
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 GACGCCCGCGACCGGTGGGGCAGCACGGCTGTAGCTGATGCCAAGTGTTATGGCCACACG 660
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 GAGGTGTACAATCTTCTCAAGGCTCGTGGTGCAAAGATCCCGAGAAACAGGAGGACACCG 720
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 ATGATGGTGTCGAATCCTGGGGACGTACCAGAGTACGAATTGAACCCTAGTGAGCTCCAA 780
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 TTCAAGAAAGGGGATGAGGTGGTCAAGGGCGTGTACCAAGTTGCCAAATGGAATGGAACC 840
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 AAGGTTCATGTTAAGATACTTGATAGAGAATGCTACTGCGATCAGGAAGTCATAAACTCT 900
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 TTCAGGCATGAGCTGACCGTATTGGAGAAGGTCCGGCACCCGAATGTTGTTCAGTTCGTC 960
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 GGAGCCGTCACTCAGAACATACCTATGATGATTATTTCTGAATACCTCCCAAATGGTGAT 1020
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 TTATCAAGCTGTATTCCGAGGAAAGGAAAGCTACATGGTCAGAAGGTTCTAAAATATGGC 1080
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 CTTGAGATCGCCAGGGGCATGACTTATCTTCACCAGTGCAAGCCAGACCCCATCATCCAC 1140
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 TGCGACCTAAAGCCAAAAAATATCTTCCTGGATAGTGGAGGCCAACTGAAAATCGCAGGA 1200
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 TTCGGTCTGACGAGGCTGTCGAAAATCTCTCCTGGCAGAGTGAAACTGGCCGATCATGAG 1260
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 TCCATGGTTGACAGCTTCAGTCACTACACTGCACCTGAGCTGTACAGAAACGAAATATTC 1320
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 GACGCAAGCGTCGACGCCTTCTCATTTGGTTTCATCCTCTATGAGATGGTTGAAGGAACA 1380
consensus_6523#1 ------------------------------------------------------------
consensus_6523#0 CACACTGTACATGGGAAGTCATCAGAGGAATCTGGCCACACAATTCGATATGATGGGATG 1440
consensus_6523#1 -----------------GTCATCAGAGGAATCTGGCCACACAATTCGATATGATGGGATG 43
*******************************************
consensus_6523#0 CGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGCGCTGATCGAA 1500
consensus_6523#1 CGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGCGCTGATCGAA 103
************************************************************
consensus_6523#0 GAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTC 1560
consensus_6523#1 GAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTC 163
************************************************************
consensus_6523#0 GACAAGATATACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGG 1620
consensus_6523#1 GACAAGATATACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGG 223
************************************************************
consensus_6523#0 AAATGACACGTGTGGGCTAAGCTGCATGAACGCCTTCTTGTGTACATATCACTGCGAAGC 1680
consensus_6523#1 TC----CGTATCTCGGCGATTTAAGAATATCAGATCTAAGCAT-TTCAGAACCAAAAAGA 278
* * * *** * * * * * * * * ** ***
consensus_6523#0 AAATGCGTCACTCTCTGTGAAGAAGAAGCCTGAGCTAGCACTCACTCGTCTGGA---GGA 1737
consensus_6523#1 GAGTCCATGTCGCAATGTGAAAACATAATTGGAGATGGTATGTCATCATATTGTTTCATG 338
* * * * * * ****** * * *** * * * ** * * *
consensus_6523#0 GGATGACACGACGTACCGACAAATTTGTGTACGTGTTGTAAAAGGCCCGGCGAAAAAAAA 1797
consensus_6523#1 GGATTAATTAGCG-ACTGAAACATTTCT-TCTGCATTGCATTTGCAC------------- 383
**** * ** ** ** * **** * * * *** * * *
consensus_6523#0 AAGTACTTGTAAAAGATCAATTTGAGTTAAATTGGAAGTAACAAAGCTT 1846
consensus_6523#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||