These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2182 fasta sequence [CCTCTCCGTCCTTTTCTGGACGGACTCGCCTCGGCGGCCGCAGCCAGCCACAGCCGCCGCTTACTTGAGATTGAGATTGTTGCCATCCCGTTGCCGATGGCGGCGATGCTCGCGCCGGCCGCGCTCCCGCCCCGAGGTTTACAGAGTAAGGCGGTTGGAAATGCGGAGTCGCAGTTGTTGCTACATGGAAAAGGTTGCATAGTGGCCGACGCAATGCTGTCAGAATATTTGCAGCAAAGAGTAATGAAAGGAGGAGGAAATCACAAAGTATATCTCAAGGTCCAACATTTATAAGTGAAGAAGCTTCTTCTTCAGGCAGTGGCGAAAACCCCACCACCAGCCTTGAGGTCAATGCCAATGATGTTACTACTGACGAGAAATTCACAGTTGCCCCAAGGAATGCGGTTCTTCAGGCTTGTACTCTCACATCTAGCTTACTCCTTGCAGGAGGTCTCGTTCTTCGTGAGGCATCACATTTTGCATCTTTGAATGGATGGCCGGTTGCTGACCCTATGAATTTGTCATGTATGCTTTCTTCTTATCTTTACAAATAAATGATGTGCCATGTAATAATGTTGAGTTACCTAAATGTATGTAAGTCGATTTCTGTATTGTTTTTCTGCAGTCAATTTTGAGACCTGGCATCTTGAGTTGATTGCAGGACTTGTAATAATAATATCATCTAGCAGATATATTCTTCTACAGACATGGCCAGATTTCAGATATTCCAGTGAGACTGCAAATAGACAAGTATATACAACTTTACAATCAGTATTTCCTTTTTGTTTTATTTTCCTTCTCATGAAGGTCTGTCATTGGCAAATACAGTTTCTCAAGTAGCTGATGAATCTATGCTGTTGTCTGAATGAACATAATAACTTTTAGAGTACATTGTAACAATTGCATTACCTCACCAGTAAATGATGTACATTTTCACCTAGTCAATAAATGCTCTGCTCTTTTTATGAACTGAGTGGAACCAAGGTTCCAAAAACTGGAGTAGATCAGTAACTGGTCCAGAGCCAGGGACTTGTTAGAGGTTGTCTATTGGCTAGAAGCCTATAGATTCAAAACTTATATTTAAATAATTCCAACTGGTTGCTGGTCAAAATTTTGAACTTTTGGATTTGAACCCTTTTCCTGTAACTGGCCAGTTACTGGATTTAACCAGTGGCTGGTAATCTAGACAGACCAGTATTTAGAATGCTGAGTGCAACGAAAGATTTTACCAAGTCTGGCACATAATCGCAAAGTTCCCGGGTCGATGGGATCGAGGAATGGGTCGAGGAATGTGGTATGCTACTTGCGAGAGGTTTTTACAAGGTGGGGACAAAAATGACCCCGCGTTCCCGGGACAGGGATGGCTGGCGTTCCCGGGTTGAGGAACGTTGCCACCAACCCCGTTTCCAAATATACAAAGTTGAGTTGCATAGTTGCATTAGTTTCCCCTAATGCAAGTGTTTCCGTTATATTGTAATATGTCATAGATCTTTATTTCAAGATGCAAAAAAGTACATTGTATCCAGTACTATCAGGTGTCTTTTCTTTATAATCATTTGAGACTTCGGCCCTGGAACACTTCAAATTCTTAGATAGTGCAAGTTCCTTCACTACACTTCAACTCTTAATGGTTTCAATTTTTGTCAACTAGATCCTTACTTCACTGGAGACTTTCGATTATATCGTAGTTGCTTGTCTTCCTGGGATAAGCGAGGAGGTGCTGTTTCGAGGGGCATTGATGCCTATCTTTGGACTGAACTGGATAAGTGCCTTTGTAACTAGTGCCATTTTCGGTATTCTTCACTTGGGCAATGGCAGAAAATATTCATTTGCAATCTGGGCAACGTTTGTTGGCGTAGCATATGGTTTAGCTACCATAGCTTCTTCAAGCATCATAGTTCCAATGGCTTCTCACTCCATAAACAATATTATCGGAGGCCTAATTTGGCGCTTTACCAACAATACAGAAAGAGAATAGGTTTCTCCTTAGTATATTTGGAAATATATATTTTCAGTTTTAGGTGTTATTTGTTTTTTTGCTTTAGCATAGACCTTTTAGTTTGTCTATACTGGTTGTTTTTGTAACTTGTACTGCTAGGATGCTTGAAGAAATGTTTTGCCTTACTGTTCTTTAAGATCATTTGGGCACGATGTGTATTACAGATAACTATTTACATGTTGT] [+] EMBL AK073450 [CCTCTCCGTCCTTTTCTGGACGGACTCGCCTCGGCGGCCGCAGCCAGCCACAGCCGCCGCTTACTTGAGATTGAGATTGTTGCCATCCCGTTGCCGATGGCGGCGATGCTCGCGCCGGCCGCGCTCCCGCCCCGAGGTTTACAGAGTAAGGCGGTTGGAAATGCGGAGTCGCAGTTGTTGCTACATGGAAAAGGTTGCATAGTGGCCGACGCAATGCTGTCAGAATATTTGCAGCAAAGAGTAATGAAAGGAGGAGGAAATCACAAAGTATATCTCAAGGTCCAACATTTATAAGTGAAGAAGCTTCTTCTTCAGGCAGTGGCGAAAACCCCACCACCAGCCTTGAGGTCAATGCCAATGATGTTACTACTGACGAGAAATTCACAGTTGCCCCAAGGAATGCGGTTCTTCAGGCTTGTACTCTCACATCTAGCTTACTCCTTGCAGGAGGTCTCGTTCTTCGTGAGGCATCACATTTTGCATCTTTGAATGGATGGCCGGTTGCTGACCCTATGAATTTGTCATGTATGCTTTCTTCTTATCTTTACAAATAAATGATGTGCCATGTAATAATGTTGAGTTACCTAAATGTATGTAAGTCGATTTCTGTATTGTTTTTCTGCAGTCAATTTTGAGACCTGGCATCTTGAGTTGATTGCAGGACTTGTAATAATAATATCATCTAGCAGATATATTCTTCTACAGACATGGCCAGATTTCAGATATTCCAGTGAGACTGCAAATAGACAAGTATATACAACTTTACAATCAGTATTTCCTTTTTGTTTTATTTTCCTTCTCATGAAGGTCTGTCATTGGCAAATACAGTTTCTCAAGTAGCTGATGAATCTATGCTGTTGTCTGAATGAACATAATAACTTTTAGAGTACATTGTAACAATTGCATTACCTCACCAGTAAATGATGTACATTTTCACCTAGTCAATAAATGCTCTGCTCTTTTTATGAACTGAGTGGAACCAAGGTTCCAAAAACTGGAGTAGATCAGTAACTGGTCCAGAGCCAGGGACTTGTTAGAGGTTGTCTATTGGCTAGAAGCCTATAGATTCAAAACTTATATTTAAATAATTCCAACTGGTTGCTGGTCAAAATTTTGAACTTTTGGATTTGAACCCTTTTCCTGTAACTGGCCAGTTACTGGATTTAACCAGTGGCTGGTAATCTAGACAGACCAGTATTTAGAATGCTGAGTGCAACGAAAGATTTTACCAAGTCTGGCACATAATCGCAAAGTTCCCGGGTCGATGGGATCGAGGAATGGGTCGAGGAATGTGGTATGCTACTTGCGAGAGGTTTTTACAAGGTGGGGACAAAAATGACCCCGCGTTCCCGGGACAGGGATGGCTGGCGTTCCCGGGTTGAGGAACGTTGCCACCAACCCCGTTTCCAAATATACAAAGTTGAGTTGCATAGTTGCATTAGTTTCCCCTAATGCAAGTGTTTCCGTTATATTGTAATATGTCATAGATCTTTATTTCAAGATGCAAAAAAGTACATTGTATCCAGTACTATCAGGTGTCTTTTCTTTATAATCATTTGAGACTTCGGCCCTGGAACACTTCAAATTCTTAGATAGTGCAAGTTCCTTCACTACACTTCAACTCTTAATGGTTTCAATTTTTGTCAACTAGATCCTTACTTCACTGGAGACTTTCGATTATATCGTAGTTGCTTGTCTTCCTGGGATAAGCGAGGAGGTGCTGTTTCGAGGGGCATTGATGCCTATCTTTGGACTGAACTGGATAAGTGCCTTTGTAACTAGTGCCATTTTCGGTATTCTTCACTTGGGCAATGGCAGAAAATATTCATTTGCAATCTGGGCAACGTTTGTTGGCGTAGCATATGGTTTAGCTACCATAGCTTCTTCAAGCATCATAGTTCCAATGGCTTCTCACTCCATAAACAATATTATCGGAGGCCTAATTTGGCGCTTTACCAACAATACAGAAAGAGAATAGGTTTCTCCTTAGTATATTTGGAAATATATATTTTCAGTTTTAGGTGTTATTTGTTTTTTTGCTTTAGCATAGACCTTTTAGTTTGTCTATACTGGTTGTTTTTGTAACTTGTACTGCTAGGATGCTTGAAGAAATGTTTTGCCTTACTGTTCTTTAAGATCATTTGGGCACGATGTGTATTACAG ] [+] EMBL AA753361 [ atcggcCGAGTATATCGTA TTGCTTGTCTTCCTGGGATAAGCGAGGAGGTGCTGTTTCGAGGGGCATTGATGCCTATCTTTGGACTGAACTGGATAAGTGCCTTTGTAACTAGTGCCA TTTCGGTATTCTTCACTTGGGCAATGGCAGAAAATATTCATTTGCAATCTGGGCAACGTTTGTTGGCGTAGCATATGGTTTAGCTACCATAGCTTCTTCAAGCATCATAGTTCCAATGGCTTCTCACTCCATAAACAATATTATCGGAGGCCTAATTTGGCGCTTTACCAACAATACAGAAAGAGAATAGGTTTCTCCTTAGTATATTTGGAAATATATATTTTCAGTTTTAGGTGTTATTTGTTTTTTTGCTTTAGCATAGACCTTTTAGTTTGTCTATACTGGTTGTTTTTGTAACTTGTACTGCTANGATGCTTGAAAAAATGTTTTGCCTTACTGTTCTTTAAGATCATTTGGGCACGATGTGTATTACAGATAACTATTTACATGTTGT] consensusID : consensus_6529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 325 fasta sequence [CCGTCCCGCTCCTCTCCGTCCTTTTCTGGACGGACTCGCCTCGGCGGCCGCAGCCAGCCACAGCCGCCGCTTACTTGAGATTGAGATTGTTGCCATCCCGTTGCCGATGGCGGCGATGCTCGCGCCGGCCGCGCTCCCGCCCCGAGGTTTACAGAGTAAGGCGGTAAATTTCTTGGCCGATTTGTTCTCTCTTCCACTTGTTGGATGCATCAGATCGAGAGGATTCAGTTCATTTGTCGAGGATATGGCATGGCACGGCAGC-TTACTGTGTGATGCTTCCG-CCCACTATAAATTTTGAGAGATTATATTTANTTTTGACAAAAAA] [+] EMBL CF335443 [CCGTCCCGCTCCTCTCCGTCCTTTTCTGGACGGACTCGCCTCGGCGGCCGCAGCCAGCCACAGCCGCCGCTTACTTGAGATTGAGATTGTTGCCATCCCGTTGCCGATGGCGGCGATGCTCGCGCCGGCCGCGCTCCCGCCCCGAGGTTTACAGAGTAAGGCGGTAAATTTCTTGGCCGATTTGTTCTCTCTTCCACTTGTTGGATGCATCAGATCGAGAGGATTCAGTTCATTTGTCGAGGATATGGCATGGCACGGCAGC TTACTGTGTGATGCTTCCG CCCACTATAA ] [-] EMBL CF335444 [ CGTCCCGCTCCTCTCCGTCCTTTTCTGGACGGACTCGCCTCGGCGGCCGCAGCCAGCCACAGCCGCCGCTTACTTGAGATTGAGATTGTTGCCATCCCGTTGCCGATGGCGGCGATGCTCGCGCCGGCCGCGCTCCCGCCCCGAGGTTTACAGAGTAAGGCGGTAAATTTCTTGGCCGATTTGTTCTCTCTTCCACTTGTTGGATGCATCAGATCGAGAGGATTCAGTTCATTTGTCGAGGATATGGCATGGCACGGCAGCNTTACTGTGTGATGCTTCCGCCCCACTATAAATTTTGAGAGATTATATTTANTTTTGACAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6529#0 ----------CCTCTCCGTCCTTTTCTGGACGGACTCGCCTCGGCGGCCGCAGCCAGCCA 50 consensus_6529#1 CCGTCCCGCTCCTCTCCGTCCTTTTCTGGACGGACTCGCCTCGGCGGCCGCAGCCAGCCA 60 ************************************************** consensus_6529#0 CAGCCGCCGCTTACTTGAGATTGAGATTGTTGCCATCCCGTTGCCGATGGCGGCGATGCT 110 consensus_6529#1 CAGCCGCCGCTTACTTGAGATTGAGATTGTTGCCATCCCGTTGCCGATGGCGGCGATGCT 120 ************************************************************ consensus_6529#0 CGCGCCGGCCGCGCTCCCGCCCCGAGGTTTACAGAGTAAGGCGGTTGGAAATGCGGAGTC 170 consensus_6529#1 CGCGCCGGCCGCGCTCCCGCCCCGAGGTTTACAGAGTAAGGCGGT--AAATTTCTTGGCC 178 ********************************************* ** * * * * consensus_6529#0 GCAGTTGTTGCTACATGGAAAAGGTTGCATAGTGGCCGACGCAATGCTGTCAGAATATTT 230 consensus_6529#1 G-ATTTGTT-CTCTCTTCCACTTGTTGGAT-GCATCAGATCGAGAGGATTCAGTTCATTT 235 * * ***** ** * * **** ** * * ** * * **** **** consensus_6529#0 GCAGCAAAGAGTAATGAAAGGAGGAGGAAATCACAAAGTATATCTCAAGGTCCAACATTT 290 consensus_6529#1 GTCG---AGGATATGGCATGGCACGGCAGCTTACTGTGTGATGCT-----TCCGCCCACT 287 * * ** ** * * ** * * * ** ** ** *** * * consensus_6529#0 ATAAGTGAAGAAGCTTCTTCTTCAGGCAGTGGCGAAAACCCCACCACCAGCCTTGAGGTC 350 consensus_6529#1 ATAAATTTTGAGAGATTATATTTANTTT-TGACAAAAAA--------------------- 325 **** * ** * * ** * ** * **** consensus_6529#0 AATGCCAATGATGTTACTACTGACGAGAAATTCACAGTTGCCCCAAGGAATGCGGTTCTT 410 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 CAGGCTTGTACTCTCACATCTAGCTTACTCCTTGCAGGAGGTCTCGTTCTTCGTGAGGCA 470 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 TCACATTTTGCATCTTTGAATGGATGGCCGGTTGCTGACCCTATGAATTTGTCATGTATG 530 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 CTTTCTTCTTATCTTTACAAATAAATGATGTGCCATGTAATAATGTTGAGTTACCTAAAT 590 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 GTATGTAAGTCGATTTCTGTATTGTTTTTCTGCAGTCAATTTTGAGACCTGGCATCTTGA 650 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 GTTGATTGCAGGACTTGTAATAATAATATCATCTAGCAGATATATTCTTCTACAGACATG 710 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 GCCAGATTTCAGATATTCCAGTGAGACTGCAAATAGACAAGTATATACAACTTTACAATC 770 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 AGTATTTCCTTTTTGTTTTATTTTCCTTCTCATGAAGGTCTGTCATTGGCAAATACAGTT 830 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 TCTCAAGTAGCTGATGAATCTATGCTGTTGTCTGAATGAACATAATAACTTTTAGAGTAC 890 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 ATTGTAACAATTGCATTACCTCACCAGTAAATGATGTACATTTTCACCTAGTCAATAAAT 950 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 GCTCTGCTCTTTTTATGAACTGAGTGGAACCAAGGTTCCAAAAACTGGAGTAGATCAGTA 1010 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 ACTGGTCCAGAGCCAGGGACTTGTTAGAGGTTGTCTATTGGCTAGAAGCCTATAGATTCA 1070 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 AAACTTATATTTAAATAATTCCAACTGGTTGCTGGTCAAAATTTTGAACTTTTGGATTTG 1130 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 AACCCTTTTCCTGTAACTGGCCAGTTACTGGATTTAACCAGTGGCTGGTAATCTAGACAG 1190 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 ACCAGTATTTAGAATGCTGAGTGCAACGAAAGATTTTACCAAGTCTGGCACATAATCGCA 1250 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 AAGTTCCCGGGTCGATGGGATCGAGGAATGGGTCGAGGAATGTGGTATGCTACTTGCGAG 1310 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 AGGTTTTTACAAGGTGGGGACAAAAATGACCCCGCGTTCCCGGGACAGGGATGGCTGGCG 1370 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 TTCCCGGGTTGAGGAACGTTGCCACCAACCCCGTTTCCAAATATACAAAGTTGAGTTGCA 1430 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 TAGTTGCATTAGTTTCCCCTAATGCAAGTGTTTCCGTTATATTGTAATATGTCATAGATC 1490 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 TTTATTTCAAGATGCAAAAAAGTACATTGTATCCAGTACTATCAGGTGTCTTTTCTTTAT 1550 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 AATCATTTGAGACTTCGGCCCTGGAACACTTCAAATTCTTAGATAGTGCAAGTTCCTTCA 1610 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 CTACACTTCAACTCTTAATGGTTTCAATTTTTGTCAACTAGATCCTTACTTCACTGGAGA 1670 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 CTTTCGATTATATCGTAGTTGCTTGTCTTCCTGGGATAAGCGAGGAGGTGCTGTTTCGAG 1730 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 GGGCATTGATGCCTATCTTTGGACTGAACTGGATAAGTGCCTTTGTAACTAGTGCCATTT 1790 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 TCGGTATTCTTCACTTGGGCAATGGCAGAAAATATTCATTTGCAATCTGGGCAACGTTTG 1850 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 TTGGCGTAGCATATGGTTTAGCTACCATAGCTTCTTCAAGCATCATAGTTCCAATGGCTT 1910 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 CTCACTCCATAAACAATATTATCGGAGGCCTAATTTGGCGCTTTACCAACAATACAGAAA 1970 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 GAGAATAGGTTTCTCCTTAGTATATTTGGAAATATATATTTTCAGTTTTAGGTGTTATTT 2030 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 GTTTTTTTGCTTTAGCATAGACCTTTTAGTTTGTCTATACTGGTTGTTTTTGTAACTTGT 2090 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 ACTGCTAGGATGCTTGAAGAAATGTTTTGCCTTACTGTTCTTTAAGATCATTTGGGCACG 2150 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 ATGTGTATTACAGATAACTATTTACATGTTGT 2182 consensus_6529#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||