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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 848 fasta sequence
[CTGATCCATTCCCCCCACCCCGCCTATTGATTGATCTGCTCGCCTCCGCCATTGTCGTTGTCGATCTCTTCTGAAGGGTGAGCGCCGGCTGCGGCAGGGAGGCGTGTGTTGCTGCCGCAGATCGATGGAGGTGGATGCCTCCGCGGTCGCAAGAGCACTACCAAGAGATTTCCCTCCCATCGAGAACTTGAGCTTCGAAGGCTTCCCCCGTTATACTTTCAAGATCGGCAACCGGATCCACTGCACCAACTTGATGTATCGCCCAGGTAGTCGGACGCTATTAACGCAGGAAGAAGCTCATGAGATCATTCGCGAGGGCTTGAGGTCTGACATTCGTCGGGGCCGCATACAACTGAACGCCGACTTCTTGCAGCAGCTTGTTGATCAGGTTCGCGATCATATTCTTCAGCGTCAGCGCCGTGGCACTGCCACTGCCATGGATGGAGTAGTGGAGGTGGAGGATGCGTACAGGAACGGTGGGTTCGGCGCTATCCCCGCGTCGAGCAAGGCCATGGCCGAGCTGCAGGAGGCGATGGCAAGCGACGCCAGGGAACGCGGGTGCGCTGTGTGCCTGGAGGATTTCGAGGCGGGAGAGAAGCTGACGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTCGGATTGGCTCCGCCTCAGCCATCGTTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATCTTACTAGGCTGTAAGAGGATAACGCCGCGGCCAGAGATGAAACAAATCATACAACTCTTGTGCTTACTCATGCTCCATCAAACACCATTCCTTTCATGTACCATCTGTCATTTATGATCGAATAACTAATCATATGC]
[+] EMBL AK108475 [CTGATCCATTCCCCCCACCCCGCCTATTGATTGATCTGCTCGCCTCCGCCATTGTCGTTGTCGATCTCTTCTGAAGGGTGAGCGCCGGCTGCGGCAGGGAGGCGTGTGTTGCTGCCGCAGATCGATGGAGGTGGATGCCTCCGCGGTCGCAAGAGCACTACCAAGAGATTTCCCTCCCATCGAGAACTTGAGCTTCGAAGGCTTCCCCCGTTATACTTTCAAGATCGGCAACCGGATCCACTGCACCAACTTGATGTATCGCCCAGGTAGTCGGACGCTATTAACGCAGGAAGAAGCTCATGAGATCATTCGCGAGGGCTTGAGGTCTGACATTCGTCGGGGCCGCATACAACTGAACGCCGACTTCTTGCAGCAGCTTGTTGATCAGGTTCGCGATCATATTCTTCAGCGTCAGCGCCGTGGCACTGCCACTGCCATGGATGGAGTAGTGGAGGTGGAGGATGCGTACAGGAACGGTGGGTTCGGCGCTATCCCCGCGTCGAGCAAGGCCATGGCCGAGCTGCAGGAGGCGATGGCAAGCGACGCCAGGGAACGCGGGTGCGCTGTGTGCCTGGAGGATTTCGAGGCGGGAGAGAAGCTGACGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTCGGATTGGCTCCGCCTCAGCCATCGTTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATCTTACTAGGCTGTAAGAGGATAACGCCGCGGCCAGAGATGAAACAAATCATACAACTCTTGTGCTTACTCATGCTCCATCAAACACCATTCCTTTCATGTACCATCTGTCATTTATGATCGAATAACTAATCATATGC]
consensusID : consensus_6542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence
[TGAGGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTTGGATTGGCTCCGCCTCAGCCATCGCTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATCTTACTAGGCTGTAAGAGGATAACGCCGCGGCCAGAGATGAAACAAATCATACAACTCTTGTGCGTACTCATGCTCCATCAAACACCATTCCATTCATGTACCATCTGTTATTATTCATGTTTTATGATCGGATTGCTATTGTTTCGGGGTATTACAGTGCCAACATTGGGATTCCCCTCGAAAGATGAACATACTTTCCCGCTAAAAGCTTCCTCTAGTTCTTCCCAGCTCGCTTGCTTCTCTTGCAGTAGAAGCTTCATCCTCTACCAAAGAAAGCTCCTTGCACTCCTCATTGGCGTTCATGTCCTGGAGCCCGAGGACAGCCATTACCACAGCGACATCACGACATCGCCATGTATGAGCTGTTGGAATATAAACATGTAATCTTGAGCATCGATTCATCTGTTTGCTTGCATGTAGTTAGCCGGCTGGAAACACTTTGGATTCGGCCGAAAGAATAGTTCTTTTAAGGGTTACATGTTTCCTGGTTTATAGTTGCGATGACCCGGGTCAGATCGTATTGAATTTGAACTTGCATGTTTGNGGAATGATATATTA]
[+] EMBL CA763988 [TGAGGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTTGGATTGGCTCCGCCTCAGCCATCGCTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATCTTACTAGGCTGTAAGAGGATAACGCCGCGGCCAGAGATGAAACAAATCATACAACTCTTGTGCGTACTCATGCTCCATCAAACACCATTCCATTCATGTACCATCTGTTATTATTCATGTTTTATGATCGGATTGCTATTGTTTCGGGGTATTACAGTGCCAACATTGGGATTCCCCTCGAAAGATGAACATACTTTCCCGCTAAAAGCTTCCTCTAGTTCTTCCCAGCTCGCTTGCTTCTCTTGCAGTAGAAGCTTCATCCTCTACCAAAGAAAGCTCCTTGCACTCCTCATTGGCGTTCATGTCCTGGAGCCCGAGGACAGCCATTACCACAGCGACATCACGACATCGCCATGTATGAGCTGTTGGAATATAAACATGTAATCTTGAGCATCGATTCATCTGTTTGCTTGCATGTAGTTAGCCGGCTGGAAACACTTTGGATTCGGCCGAAAGAATAGTTCTTTTAAGGGTTACATGTTTCCTGGTTTATAGTTGCGATGACCCGGGTCAGATCGTATTGAATTTGAACTTGCATGTTTGNGGAATGATATATTA]
consensusID : consensus_6542#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence
[GTGGTGGATGTGGATCTCGTCCCCACTACTCCACCGCGCCTCTCGCTTCCTCCGTCCCCAGCCGCGCCGCTCGCTGCCTCCGTTTACAGCCGTGACGCTCGCTAGTCGCTACCTCCACCCCAGCCGCGTCGCTCACTGTTTTCCTCCACCGCCGCAGTCTCTGTCCCCACCCGCGCCGCTCGTTGATCCACGTTTGGGGGCGGATCCGAGTCGGATTCACTCTCGATTTCGATCGGGACGCGGAGTCCGATCGATTTCTTCGTCTATAAACTCTGCAGGGGACGTACGGTGAGCGCCTCCGGCGTGTGTTGCTGCCGCAGATCGATGGAGGTGGATGCCTCCGCGGTCGCAAGAGCACTACCAAGAGATTTCCCTCCCATCGAGAACTTGAGCTTCGAAGGCATCCCCCGTTATACTTTCAAGATTGGCAACCGGATCCACTGCACCAACTTGATGTACCGCCCAGGTAGTCGGACGCTATTAACGCAGGAAGAAGCTCATGAGATCATTCGCGAGCGCTTGAGGTCTGACATTCGTCGGGGCCGCATAGAACTGGA]
[+] EMBL CF337595 [GTGGTGGATGTGGATCTCGTCCCCACTACTCCACCGCGCCTCTCGCTTCCTCCGTCCCCAGCCGCGCCGCTCGCTGCCTCCGTTTACAGCCGTGACGCTCGCTAGTCGCTACCTCCACCCCAGCCGCGTCGCTCACTGTTTTCCTCCACCGCCGCAGTCTCTGTCCCCACCCGCGCCGCTCGTTGATCCACGTTTGGGGGCGGATCCGAGTCGGATTCACTCTCGATTTCGATCGGGACGCGGAGTCCGATCGATTTCTTCGTCTATAAACTCTGCAGGGGACGTACGGTGAGCGCCTCCGGCGTGTGTTGCTGCCGCAGATCGATGGAGGTGGATGCCTCCGCGGTCGCAAGAGCACTACCAAGAGATTTCCCTCCCATCGAGAACTTGAGCTTCGAAGGCATCCCCCGTTATACTTTCAAGATTGGCAACCGGATCCACTGCACCAACTTGATGTACCGCCCAGGTAGTCGGACGCTATTAACGCAGGAAGAAGCTCATGAGATCATTCGCGAGCGCTTGAGGTCTGACATTCGTCGGGGCCGCATAGAACTGGA]
consensusID : consensus_6542#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence
[TTTTTATCTGAATTTTTTTTATTTCTAGTTTTCCTGCGAGTCCCTTATGGAATATTCCGTCTCCAGTTCTCCCATGAATCCCTTATGGAAATTTGTATCGAAATGTTGAAATTTACATAGTTATATACTTCTGCTTTCTTGATCTTCAATTCAAAGTCTGTAATAGCTCTTTGCATTATCCTTCTTTTTCTCTGTTGTTCTCATTCTTGTTTCTGCGCAAATATGTTCATAGTACAAGTCTGCTCCTCCTTATACGAAGGTGTTCCTACCTCTGTTACTATGTCTGAATTTTCTTCTTTTCTGAACATTATGGCGATGTCGTGATGTCGCTGTGGTAATGGCTGTCCTCGGGCTCCAGGACATGAACGCCAATGAGGAGTGCAAGGAGCTTTCTTTGGTAGAGGATGAAGCTTCTACTGCAAGAGAAGCAAGCGAGCTGGGAAGAACTAGAGGAAGCTTTTAGCGGGAAAGTATGTTCATCTTTCGAGGGGAATCCCAATGTTGGCACTGTAATACCCCGAAACAATAGCAATCCGATCATAA]
[+] EMBL CF337596 [TTTTTATCTGAATTTTTTTTATTTCTAGTTTTCCTGCGAGTCCCTTATGGAATATTCCGTCTCCAGTTCTCCCATGAATCCCTTATGGAAATTTGTATCGAAATGTTGAAATTTACATAGTTATATACTTCTGCTTTCTTGATCTTCAATTCAAAGTCTGTAATAGCTCTTTGCATTATCCTTCTTTTTCTCTGTTGTTCTCATTCTTGTTTCTGCGCAAATATGTTCATAGTACAAGTCTGCTCCTCCTTATACGAAGGTGTTCCTACCTCTGTTACTATGTCTGAATTTTCTTCTTTTCTGAACATTATGGCGATGTCGTGATGTCGCTGTGGTAATGGCTGTCCTCGGGCTCCAGGACATGAACGCCAATGAGGAGTGCAAGGAGCTTTCTTTGGTAGAGGATGAAGCTTCTACTGCAAGAGAAGCAAGCGAGCTGGGAAGAACTAGAGGAAGCTTTTAGCGGGAAAGTATGTTCATCTTTCGAGGGGAATCCCAATGTTGGCACTGTAATACCCCGAAACAATAGCAATCCGATCATAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6542#0 ------------------------------------------------------------
consensus_6542#2 GTGGTGGATGTGGATCTCGTCCCCACTACTCCACCGCGCCTCTCGCTTCCTCCGTCCCCA 60
consensus_6542#1 ------------------------------------------------------------
consensus_6542#3 ------------------------------------------------------------
consensus_6542#0 ------------------------------------------------------------
consensus_6542#2 GCCGCGCCGCTCGCTGCCTCCGTTTACAGCCGTGACGCTCGCTAGTCGCTACCTCCACCC 120
consensus_6542#1 ------------------------------------------------------------
consensus_6542#3 ------------------------------------------------------------
consensus_6542#0 ------------------------------------------------------------
consensus_6542#2 CAGCCGCGTCGCTCACTGTTTTCCTCCACCGCCGCAGTCTCTGTCCCCACCCGCGCCGCT 180
consensus_6542#1 ---------------------------------------------------------TGA 3
consensus_6542#3 ------------------------------------------------------------
consensus_6542#0 --------------------CTGATCCATTCCC--CCCACCCCGCCTA----TTGATTGA 34
consensus_6542#2 CGTTGATCCACGTTTGGGGGCGGATCCGAGTCGGATTCACTCTCGATT----TCGATCGG 236
consensus_6542#1 GGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTTGGATTGGCTCCGCCTCA 63
consensus_6542#3 ------------------------------------------------------------
consensus_6542#0 TCTGCTCGCCTCCGCCATTGTCGTTGTCGATCTCTTCTGAAGGGTGAGCGCCGGCTGCGG 94
consensus_6542#2 GACGCGGAGTCCGATCGATTTCTTCGTCTATAAACTCTGCAGGGGACGTACGGTGAGCGC 296
consensus_6542#1 GCCATCGCTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATCTTACTAGGCTG 123
consensus_6542#3 ------------------------------------TTTTTATCTGAATTTTTTTTATTT 24
consensus_6542#0 CAGGGAGGCGTGTGTTGCTGCCGCAGATCGATGGAGGTGGATGCCTCC-GCGGTCGCAAG 153
consensus_6542#2 CTCCG--GCGTGTGTTGCTGCCGCAGATCGATGGAGGTGGATGCCTCC-GCGGTCGCAAG 353
consensus_6542#1 TAAGAGGATA-ACGCCGCGGCCAGAGATGAAACAAATCATACAACTCTTGTGCGTACTCA 182
consensus_6542#3 CTAG--------TTTTCCTGCGAGTCCCTTATGGAATATTCCGTCTCCAGTTCTCCCATG 76
* ** * * *** * *
consensus_6542#0 AGCACTACCAAGAGATTTCCCTCCCATCGAGAACTTGAGCTTCGAAGGCTTCCCCCGTTA 213
consensus_6542#2 AGCACTACCAAGAGATTTCCCTCCCATCGAGAACTTGAGCTTCGAAGGCATCCCCCGTTA 413
consensus_6542#1 TGCTCCATCAAACACCATTCCATTCATGTACCATCTGTTATT---ATTCATGTTTTATGA 239
consensus_6542#3 AATCCCTTATGGAAATTTGT-----ATCGAAATGTTGAAATTTACATAGTTATATACTTC 131
* * ** * ** ** * * *
consensus_6542#0 TACTTTCAAGATCGGCAACCGGATCCACTGCACCAACTTGATGTATCGCCCAGGTAGTCG 273
consensus_6542#2 TACTTTCAAGATTGGCAACCGGATCCACTGCACCAACTTGATGTACCGCCCAGGTAGTCG 473
consensus_6542#1 TCGGATTGCTATTGTTTCGGGGTATTACAGTGCCAACATTGGGATTCCCCTCGAAAGATG 299
consensus_6542#3 TGCTTTCTTGATCTTCAATTCAAAGT-CTGTAATAGCTCTTTGCATTATCCTTCTTTTTC 190
* * ** * * * * * *
consensus_6542#0 GACGCTATTAACGCAGGAAGAAGCTCATGAGATCATTCGCGAG-GGCTTGAGG-TCTGAC 331
consensus_6542#2 GACGCTATTAACGCAGGAAGAAGCTCATGAGATCATTCGCGAG-CGCTTGAGG-TCTGAC 531
consensus_6542#1 AACA-TACTTTCCCGCTAAAAGCTTCCTCTAGTTCTTCCCAGCTCGCTTGCTTCTCTTGC 358
consensus_6542#3 TCTGTTGTTCTCA----------TTCTTGT--TTCTGCGCAAA-----TATGTTCATAGT 233
* * * ** * * * * * * *
consensus_6542#0 ATTCGTCGGGGCCGCATACAACTGAACGCCGACTTCTTGCAGCAGCTTGTTGATCAGGTT 391
consensus_6542#2 ATTCGTCGGGGCCGCATAGAACTGGA---------------------------------- 557
consensus_6542#1 AGTAGAAGCTTCATCCTCTACCAAAGAAAGCTCCTTGCACTCCTCATTGGCGTTCATGTC 418
consensus_6542#3 ACAAGTCTGCTCCTCCT-TATACGAAGGTGTTCCTACCTCTGTTACT--ATGTCTGAATT 290
* * * * * *
consensus_6542#0 CGCGATCATATTCTTCAGCGTCAGCGCCGTGGCACTGC--CACTGCCATGGATGGAGTAG 449
consensus_6542#2 ------------------------------------------------------------
consensus_6542#1 CTGGAGCCCGAGGACAGCCATTACCACAGCGACATCACGACATCGCCATGTATGAGCTGT 478
consensus_6542#3 TTC---TTCTTTTCTGAACATTATGGCGATGTCGTGATGTCGCTGTGGTAATGGCTGTCC 347
consensus_6542#0 TGGAGGTGGAGGATGCGTACAGGAACGGTGGGTTCGGCGCTATCCCCGCGTCGAGCAAGG 509
consensus_6542#2 ------------------------------------------------------------
consensus_6542#1 TGGAATATAAACATGTAATCTTGAGCA-TCGATTCATCTGTTTGCTTGCATGTAGTTAGC 537
consensus_6542#3 TCGGGCTCCAGGACATGAACGCCAATGAGGAGTGCAAGGAGCTTTCTTTGGTAGAGGATG 407
consensus_6542#0 CCATGGCCGAGCTGCAGGAGGCGATGGCAAGCGACGCCAGGGAACGCGGGTGCGCTGTGT 569
consensus_6542#2 ------------------------------------------------------------
consensus_6542#1 CGGCTGGAAACACTTTGGATTCGGCCGAAAGAATAGTTCTTTTAAGGGTTACATGTTTCC 597
consensus_6542#3 AAGCTTCTA--CTGCAAGAGA----AGCAAGCGA-GCTGGGAAGAACTAGAGGAAGCTTT 460
consensus_6542#0 GCCTGGAGGATTTCGAGGCGGGAGAGAAGCTGACGAGGATGCCCTGCTCGCATTGCTTCC 629
consensus_6542#2 ------------------------------------------------------------
consensus_6542#1 TGGTTTATAGTTGCGATGACCCGGGTCAGATCGTATTGAATTTGAACTTGCATGTTTGNG 657
consensus_6542#3 TAGCGGGAAAGTATGTTCATCTTTCGAGGGGAATCCCAATGTTGGCACTGTAATACCCCG 520
consensus_6542#0 ATGCGACCTGCATCTCGGATTGGCTCCGCCTCAGCCATCGTTGCCCGCTCTGCAGATTCC 689
consensus_6542#2 ------------------------------------------------------------
consensus_6542#1 GAATGATATATTA----------------------------------------------- 670
consensus_6542#3 AAACAATAGCAATCCGATCATAA------------------------------------- 543
consensus_6542#0 CGATGCCAACCCAAGACCAATCTTACTAGGCTGTAAGAGGATAACGCCGCGGCCAGAGAT 749
consensus_6542#2 ------------------------------------------------------------
consensus_6542#1 ------------------------------------------------------------
consensus_6542#3 ------------------------------------------------------------
consensus_6542#0 GAAACAAATCATACAACTCTTGTGCTTACTCATGCTCCATCAAACACCATTCCTTTCATG 809
consensus_6542#2 ------------------------------------------------------------
consensus_6542#1 ------------------------------------------------------------
consensus_6542#3 ------------------------------------------------------------
consensus_6542#0 TACCATCTGTCATTTATGATCGAATAACTAATCATATGC 848
consensus_6542#2 ---------------------------------------
consensus_6542#1 ---------------------------------------
consensus_6542#3 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||