These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6551#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1270 fasta sequence [CTAGAACGGGAGGAGGGCGTCTTCCCCGTTCTTCCGGCGG-GGAGACCTCGCCGGCGGCGACAAATGGAGCGGCGATCGAGCGTTCGCTTCGCGCCATCCGAGATTGCAAGGATGGAGAAGTTGGTTACACATAAAAAGGAACAAGTCTTGGATGACATTTTCTGCCGGAAGCTCGCAGAAGAATTTAATTGTTCTCCAGGCCGAGTTGGAAGTACAGCACTACAGGCTGTGCAGGTTCAAGAATGGTTCCGCAAAAAGTTCCCTGCATCAAC-TGTTATACCTCCTTGTT-TGACTACTGGCTCTGAAGAACAGGCTTTAGCCTCCCAAGCAAGTGCACCGGTTTCTGAAGAAAAGCCTCCATCATCTGAAGAAAATGCTTTAGCTGTTGATACAAGCATTTCAAATGATATAGGCGAGGTTTCGCCGGATTTACCTATAGACAACATAGATAAGCTTCCTGAAATTGAAGACATGCAGTTCGAGGCTAGGTCTTCAAAGGATTTTGCTTGGTATGATATCGCCACTTTCTTAGCATACAGGAAGTTAAGTTCTGGTGAATTTGAAGTCCGAGTGAGATTTCAAGGATTTGGGGCTGAAGAGGATGAATGGATCAATGTCCGGAAGGCTATCCGCCTGCAATCCATCCCGTTGGAATCATCAGAATGCAAACTCATCAGGGAAGGAGACCTTGTCCTCTGTTTCAAGGAGAGCAATGATGAAGCATTGCATTTCGATGCGCATGTTCTGGAAATCCAGCGGAAACAACATGATATAAGGGGGTGCAGATGTGTCTTCCTTGTCGAATACGACCATGATGGAACCCAGGAGAGGGTGAACCTGAGAAGATTGTCCCGGCGGCCAAAGCACTCCTGATGGCTTGTGTCAAACTGTCAAATACACATCTGCCTCTTGCCTCTTGCCGTATGCGCTAATGCTGAACTAACAGGAACTCCGAACCTAGTTAGGGGCTAAACTTTTTGCTTGGTTCAGAACTCATTGATGAGTACAGTAACCCCCCCCCCCCCCCGGTGATGGTACATTTCAACCCTCTTTGGCAAATTCCGAACCTAGTTAGGGGCTGTTCGTGGGGCTGCTTGATGGCCAAATTTTGTGCAGTAATTTGGGAGGAAAAGAGGGGGATTAGTCAAGACTGAACTGAAGAGCATATTACCTCCAAGAACTAACAGGATTGGACTTTTTAAATGCGTTGTGTTGGGTGTGAGATTCCACATTTCCATGGAAAATTCGTAATGCTCAGCGTTCTCGGCTT] [-] EMBL BI809947 [CTAGAACGGGAGGAGGGCGTCTTCCCCGTTCTTCCGGCGG GGAGACCTCGCCGGCGGCGACAAATGGAGCGGCGATCGAGCGTTCGCTTCGCGCCATCCGAGATTGCAAGGATGGAGAAGTTGGTTACACATAAAAAGGAACAAGTCTTGGATGACATTTTCTGCCGGAAGCTCGCAGAAGAATTTAATTGTTCTCCAGGCCGAGTTGGAAGTACAGCACTACAGGCTGTGCAGGTTCAAGAATGGTTCCGCAAAAAGTTCCCTGCATCAACGTGTTATACCTCCTTGTTATGACTACTGGCTCTGAAGAACAGGCTTTAGCCTCCCAAGCAAGTGCACCGGTTTCTGAAGAACAGCCTCCATCATCTGAAGAAAATGCTTTAGCTGTGGATACAAGCATTTCAAATGATATAGGCGAGG TTCGCCGGATTTACCTATAGACAACATAGATAAGCTTCCTGAAAT ] [+] EMBL AK069895 [ ttGGGAGGAGGGCGTCTTCCCCGTTCTTCCGGCGGCGGAGACCTCGCCGGCGGCGAGAAATGGAGCGGCGATCGAGCGTTCGCTTCGCGCCATCCGAGATTGCAAGGATGGAGAAGTTGGTTACACATAAAAAGGAACAAGTCTTGGATGAAATTTTCTGCCGGAAGCTCGCAGAAGAATTTAATTGTTCTCCAGGCCGAGTTGGAAGTAAAGCACTACAGGCTGTGCAGGTTCAAGAATGGTTCCGTCAAAAGTTCCCTGCATCAAC TGTTATACCTCCTTGTT TGCCTACTGGCTCTGAAGAAAAGGCTTTAGCCTCCCAAGCAAGTGCACGGGTTTCTGAAGAAAAGCCTCCATCATCTGAAGAAAATGCTTTAGCTGTTGATACAAGCATTTCAAATGATATAGGCGAGGTTTCGCCGGATTTACCTATAGACAACATAGATAAGCTTCCTGAAATTGAAGACATGCAGTTCGAGGCTAGGTCTTCAAAGGATTTTGCTTGGTATGATATCGCCACTTTCTTAGCATACAGGAAGTTAAGTTCTGGTGAATTTGAAGTCCGAGTGAGATTTCAAGGATTTGGGGCTGAAGAGGATGAATGGATCAATGTCCGGAAGGCTATCCGCCTGCAATCCATCCCGTTGGAATCATCAGAATGCAAACTCATCAGGGAAGGAGACCTTGTCCTCTGTTTCAAGGAGAGCAATGATGAAGCATTGCATTTCGATGCGCATGTTCTGGAAATCCAGCGGAAACAACATGATATAAGGGGGTGCAGATGTGTCTTCCTTGTCGAATACGACCATGATGGAACCCAGGAGAGGGTGAACCTGAGAAGATTGTCCCGGCGGCCAAAGCACTCCTGATGGCTTGTGTCAAACTGTCAAATACACATCTGCCTCTTGCCTCTTGCCGTATGCGCTAATGCTGAACTAACAGGAACTCCGAACCTAGTTAGGGGCTAAACTTTTTGCTTGGTTCAGAACTCATTGATGAGTACAGTAACCCCCCCCCCCCCCCGGTGATGGTACATTTCAACCCTCTTTGGCAAATTCCGAACCTAGTTAGGGGCTGTTCGTGGGGCTGCTTGATGGCCAAATTTTGTGCAGTAATTTGGGAGGAAAAGAGGGGGATTAGTCAAGACTGAACTGAAGAGCATATTACCTCCAAGAACTAACAGGATTGGACTTTTTAAATGCGTTGTGTTGGGTGTGAGATTCCACATTTCCATGGAAAATTCGTAATGCTCAGCGTTCTCGGCTT] [+] EMBL BE607451 [ AAGAAAAGCCTCCATCATCTGAAGAAAATGCTTTAGCTGTTGATACAAGCATTTCAAATGATATAGGCGAGGTTTCGCCGGATTTACCTATAGACAACATAGATAAGCTTCCTGAAATTGAAGACATGCAGTTCGAGGCTAGGTCTTCAAAGGATTTTGCTTGGTATGATATCGCCACTTTCTTAGCATACAGGAAGTTAAGTTCTGGTGAATTTGAAGTCCGAGTGAGATTTCAAGGATTTGGGGCTGAAGAGGATGAATGGATCAATGTCCGGAAGGCTATCCGCCTGCAATCCATCCCGTTGGAATCATCAGAATGCAAACTCATCAGGGAAGGAGACCTTGTCCTCTGTTTCAAGGAGAGCAATGATGAAGCATTGCATTTCGATGCGCATGTTCTGGAAATCCAGCGGAAACAACACGATATAAGGGGGTGCAGATGTGTCTTCCTTGTCGAATACGACCATGATG ] consensusID : consensus_6551#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [TCAAGGATTTGGGGCTGAAGAGGATGAATGGATCAATGTCCGGAAGGCTATCCGCCTGCAATCCATCCCGTTGGAATCATCAGAATGCAAACTCATCAGGGAAGGAGACCTTGTCCTCTGTTTCAAGGAGAGCAATGATGAAGCATTGCATTTCGATGCGCATGTTCTGGAAATCCAGCGGAAACAACATGATATAAGGGGGTGCAGATGTGTCTTCCTTGTCGAATACGACCATGATGGAACCCAGGAGAGGGTGAACCTGAGAAGATTGTCCCGGCGGCCAAAGCACTCCTGATGGCTTGTGTCAAACTGTCAAATACACATCTGCCTCTTGCCTCTTGCCGTATGCGCTAATGCTGAACTAACAGGAACTCCGAACCTAGTTAGGGGCTAAACTTTTTGCTTGGTTCAGAACTCATTGATGAGTACAGTAACCCCCCCCCCCCCCCGGTGATGGTACATTTCAACCCTCTTTGGCAAATTCCGAACCTAGTTAGGGGCTGTTCGTGGGGCTGCTTGATGGCCAAATTTTGTGCAGTAATTTGGGAGGAAAAGAGGGGGATTAGTCAAGACTGAACTGAAGAGCATACTACCTCCAAGAACTAACAGGATTGGACTTTTTAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCG] [-] EMBL CF338139 [TCAAGGATTTGGGGCTGAAGAGGATGAATGGATCAATGTCCGGAAGGCTATCCGCCTGCAATCCATCCCGTTGGAATCATCAGAATGCAAACTCATCAGGGAAGGAGACCTTGTCCTCTGTTTCAAGGAGAGCAATGATGAAGCATTGCATTTCGATGCGCATGTTCTGGAAATCCAGCGGAAACAACATGATATAAGGGGGTGCAGATGTGTCTTCCTTGTCGAATACGACCATGATGGAACCCAGGAGAGGGTGAACCTGAGAAGATTGTCCCGGCGGCCAAAGCACTCCTGATGGCTTGTGTCAAACTGTCAAATACACATCTGCCTCTTGCCTCTTGCCGTATGCGCTAATGCTGAACTAACAGGAACTCCGAACCTAGTTAGGGGCTAAACTTTTTGCTTGGTTCAGAACTCATTGATGAGTACAGTAACCCCCCCCCCCCCCCGGTGATGGTACATTTCAACCCTCTTTGGCAAATTCCGAACCTAGTTAGGGGCTGTTCGTGGGGCTGCTTGATGGCCAAATTTTGTGCAGTAATTTGGGAGGAAAAGAGGGGGATTAGTCAAGACTGAACTGAAGAGCATACTACCTCCAAGAACTAACAGGATTGGACTTTTTAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6551#0 CTAGAACGGGAGGAGGGCGTCTTCCCCGTTCTTCCGGCGGGGAGACCTCGCCGGCGGCGA 60 consensus_6551#1 ------------------------------------------------------------ consensus_6551#0 CAAATGGAGCGGCGATCGAGCGTTCGCTTCGCGCCATCCGAGATTGCAAGGATGGAGAAG 120 consensus_6551#1 ------------------------------------------------------------ consensus_6551#0 TTGGTTACACATAAAAAGGAACAAGTCTTGGATGACATTTTCTGCCGGAAGCTCGCAGAA 180 consensus_6551#1 ------------------------------------------------------------ consensus_6551#0 GAATTTAATTGTTCTCCAGGCCGAGTTGGAAGTACAGCACTACAGGCTGTGCAGGTTCAA 240 consensus_6551#1 ------------------------------------------------------------ consensus_6551#0 GAATGGTTCCGCAAAAAGTTCCCTGCATCAACTGTTATACCTCCTTGTTTGACTACTGGC 300 consensus_6551#1 ------------------------------------------------------------ consensus_6551#0 TCTGAAGAACAGGCTTTAGCCTCCCAAGCAAGTGCACCGGTTTCTGAAGAAAAGCCTCCA 360 consensus_6551#1 ------------------------------------------------------------ consensus_6551#0 TCATCTGAAGAAAATGCTTTAGCTGTTGATACAAGCATTTCAAATGATATAGGCGAGGTT 420 consensus_6551#1 ------------------------------------------------------------ consensus_6551#0 TCGCCGGATTTACCTATAGACAACATAGATAAGCTTCCTGAAATTGAAGACATGCAGTTC 480 consensus_6551#1 ------------------------------------------------------------ consensus_6551#0 GAGGCTAGGTCTTCAAAGGATTTTGCTTGGTATGATATCGCCACTTTCTTAGCATACAGG 540 consensus_6551#1 ------------------------------------------------------------ consensus_6551#0 AAGTTAAGTTCTGGTGAATTTGAAGTCCGAGTGAGATTTCAAGGATTTGGGGCTGAAGAG 600 consensus_6551#1 --------------------------------------TCAAGGATTTGGGGCTGAAGAG 22 ********************** consensus_6551#0 GATGAATGGATCAATGTCCGGAAGGCTATCCGCCTGCAATCCATCCCGTTGGAATCATCA 660 consensus_6551#1 GATGAATGGATCAATGTCCGGAAGGCTATCCGCCTGCAATCCATCCCGTTGGAATCATCA 82 ************************************************************ consensus_6551#0 GAATGCAAACTCATCAGGGAAGGAGACCTTGTCCTCTGTTTCAAGGAGAGCAATGATGAA 720 consensus_6551#1 GAATGCAAACTCATCAGGGAAGGAGACCTTGTCCTCTGTTTCAAGGAGAGCAATGATGAA 142 ************************************************************ consensus_6551#0 GCATTGCATTTCGATGCGCATGTTCTGGAAATCCAGCGGAAACAACATGATATAAGGGGG 780 consensus_6551#1 GCATTGCATTTCGATGCGCATGTTCTGGAAATCCAGCGGAAACAACATGATATAAGGGGG 202 ************************************************************ consensus_6551#0 TGCAGATGTGTCTTCCTTGTCGAATACGACCATGATGGAACCCAGGAGAGGGTGAACCTG 840 consensus_6551#1 TGCAGATGTGTCTTCCTTGTCGAATACGACCATGATGGAACCCAGGAGAGGGTGAACCTG 262 ************************************************************ consensus_6551#0 AGAAGATTGTCCCGGCGGCCAAAGCACTCCTGATGGCTTGTGTCAAACTGTCAAATACAC 900 consensus_6551#1 AGAAGATTGTCCCGGCGGCCAAAGCACTCCTGATGGCTTGTGTCAAACTGTCAAATACAC 322 ************************************************************ consensus_6551#0 ATCTGCCTCTTGCCTCTTGCCGTATGCGCTAATGCTGAACTAACAGGAACTCCGAACCTA 960 consensus_6551#1 ATCTGCCTCTTGCCTCTTGCCGTATGCGCTAATGCTGAACTAACAGGAACTCCGAACCTA 382 ************************************************************ consensus_6551#0 GTTAGGGGCTAAACTTTTTGCTTGGTTCAGAACTCATTGATGAGTACAGTAACCCCCCCC 1020 consensus_6551#1 GTTAGGGGCTAAACTTTTTGCTTGGTTCAGAACTCATTGATGAGTACAGTAACCCCCCCC 442 ************************************************************ consensus_6551#0 CCCCCCCGGTGATGGTACATTTCAACCCTCTTTGGCAAATTCCGAACCTAGTTAGGGGCT 1080 consensus_6551#1 CCCCCCCGGTGATGGTACATTTCAACCCTCTTTGGCAAATTCCGAACCTAGTTAGGGGCT 502 ************************************************************ consensus_6551#0 GTTCGTGGGGCTGCTTGATGGCCAAATTTTGTGCAGTAATTTGGGAGGAAAAGAGGGGGA 1140 consensus_6551#1 GTTCGTGGGGCTGCTTGATGGCCAAATTTTGTGCAGTAATTTGGGAGGAAAAGAGGGGGA 562 ************************************************************ consensus_6551#0 TTAGTCAAGACTGAACTGAAGAGCATATTACCTCCAAGAACTAACAGGATTGGACTTTTT 1200 consensus_6551#1 TTAGTCAAGACTGAACTGAAGAGCATACTACCTCCAAGAACTAACAGGATTGGACTTTTT 622 *************************** ******************************** consensus_6551#0 AAATGCGTTGTGTTGGGTGTGAGATTCCACATTTCCATGGAAAATTCGTAATGCTCAGCG 1260 consensus_6551#1 AAAAAAA-------AAAAAAAAAAAAAAACACTGTCATGCCG------------------ 657 *** * * *** * **** consensus_6551#0 TTCTCGGCTT 1270 consensus_6551#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||