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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1419 fasta sequence
[TTAAGTACATATTAGTTATAGCTAAGAAACGGTGATATTGTTTTTCATATATAACCCTTAAATTGATACCCGAGATCTTCTATAGCTGCTGTAGTAGATATATCCATTTTTGCAGTAAATTAATTATTAAAAAAATAGGGCACAATATAGCACGAGTAGTGCACGAGACAACAAAGAAATTATTGATGAGGTAGCTAGCTTTAAGCTGTTGTGGGAGGTCATCGCCTCACCAACTGCATGCTAAATATATCGATAGATATATTATGCTTTGTTATATTCTGTCTTGCCTAACCGGCCGCATCTCCCCCTTCCTCCACTCACTTTAAGCATCGATCACTGCTTGGTACTACTACGTCGCTTAATCACTTCTTGATTCCTTTGCTAACCTACTACTCCACTACTTGGCCTGCCACAGTTTGATAGCTAGCTTAGCTAGCTAGCGATCGATCGACGTCGTCGTTGATCCATCGCCACCGGCGCCGGCGGCGATGTGCCTCCCGTTCCTCTGCGGCGGTGACGACCCCGTGAAAAATAGCGAGGTACGGCCGCCGGCGAGGCACCCGAGAGAAGGTCCAAACGACGGCGACGGCGGCCACAAGCCATCACCACCTCCGCATGCCGGCGGCGCCGTCAACGGCAACGGGGGAGCTGCTCCGCCTGCTCCGGCGACGTCGCCGGACACCGAGGTCCGGGCGCCCACCTATGGCGATAAACAGATCAGTC-CTCCGAAGGAAGGCGCAGCTGGGAAGCCGCCTATGGTGGTCCCGGCGGCAAATCATCCGCAAGCTCCCACCGGCGAGGAGGCTAAGAAGGCTCACGGCGGCGGCGGCGCCGTCGGTCGCCGCAATGGAATTTCGTCCACGGTACTCACGGCGCCGCCG-CCAGTGGGACCCATGGCTGCTCCAGCGACGACAGTGAAGGATGCTCCTCCTGCTGCTGCTGCTGCTGCCGCCAACGACGTCCATGGCGATGCTGATGAGCAACACCCTGGCTATGGTGATCACGGCGAGGTCGACGACCGCAAGCCTCGACGCAGATCATGGTTGTGAGGTGAGCAATGGCACGCAACTACATATTGGCTGTGCTGTGAATTGTGATCCTCGTTCTTTATGCATATGCCGCTCTCGGCGCTGCTGGCTGGTGATCAACGATGCATATATACATATGTGCTATATATATTTTTACAGGTTT-GCAAAAAATAAAGAGACATTAGTTGCTAATTGTTGTTCTTGTGCCCTAACTAGTTTGGGTGTAATATTGTGTTAATTGTTGTATTTTAGTATGTGCACTTGTATGGGTGTTGATGAATCATGGACATATATCAGTATTGCATGATCTCGATTATAATGCAGAGCAAAATCTGCAAATTTGTTCTTAGGGTTTTATGGAAGGATGTAAATTAATCTTGTCCCTTAAAGG]
[+] EMBL AK109831 [TTAAGTACATATTAGTTATAGCTAAGAAACGGTGATATTGTTTTTCATATATAACCCTTAAATTGATACCCGAGATCTTCTATAGCTGCTGTAGTAGATATATCCATTTTTGCAGTAAATTAATTATTAAAAAAATAGGGCACAATATAGCACGAGTAGTGCACGAGACAACAAAGAAATTATTGATGAGGTAGCTAGCTTTAAGCTGTTGTGGGAGGTCATCGCCTCACCAACTGCATGCTAAATATATCGATAGATATATTATGCTTTGTTATATTCTGTCTTGCCTAACCGGCCGCATCTCCCCCTTCCTCCACTCACTTTAAGCATCGATCACTGCTTGGTACTACTACGTCGCTTAATCACTTCTTGATTCCTTTGCTAACCTACTACTCCACTACTTGGCCTGCCACAGTTTGATAGCTAGCTTAGCTAGCTAGCGATCGATCGACGTCGTCGTTGATCCATCGCCACCGGCGCCGGCGGCGATGTGCCTCCCGTTCCTCTGCGGCGGTGACGACCCCGTGAAAAATAGCGAGGTACGGCCGCCGGCGAGGCACCCGAGAGAAGGTCCAAACGACGGCGACGGCGGCCACAAGCCATCACCACCTCCGCATGCCGGCGGCGCCGTCAACGGCAACGGGGGAGCTGCTCCGCCTGCTCCGGCGACGTCGCCGGACACCGAGGTCCGGGCGCCCACCTATGGCGATAAACAGATCAGTC CTCCGAAGGAAGGCGCAGCTGGGAAGCCGCCTATGGTGGTCCCGGCGGCAAATCATCCGCAAGCTCCCACCGGCGAGGAGGCTAAGAAGGCTCACGGCGGCGGCGGCGCCGTCGGTCGCCGCAATGGAATTTCGTCCACGGTACTCACGGCGCCGCCG CCAGTGGGACCCATGGCTGCTCCAGCGACGACAGTGAAGGATGCTCCTCCTGCTGCTGCTGCTGCTGCCGCCAACGACGTCCATGGCGATGCTGATGAGCAACACCCTGGCTATGGTGATCACGGCGAGGTCGACGACCGCAAGCCTCGACGCAGATCATGGTTGTGAGGTGAGCAATGGCACGCAACTACATATTGGCTGTGCTGTGAATTGTGATCCTCGTTCTTTATGCATATGCCGCTCTCGGCGCTGCTGGCTGGTGATCAACGATGCATATATACATATGTGCTATATATATTTTTACAGGTTT GCAAAAAATAAAGAGACATTAGTTGCTAATTGTTGTTCTTGTGCCCTAACTAGTTTGGGTGTAATATTGTGTTAATTGTTGTATTTTAGTATGTGCACTTGTATGGGTGTTGATGAATCATGGACATATATCAGTATTGCATGATCTCGATTATAATGCAGAG ]
[+] EMBL BQ906587 [ cCCGGACACCGAGTTCCAGGCGCCCACCTATGGCGATAANCAGATCAGTCTGTCCGAAGGAAGGCGCAGCTGGGAA CCGCCTACGGTGGTCCCGGCGGCGAATCATCCGCAAGCTCCCACCGGCGACGAGGCTAAGAAGGTTCACGGC GCGGTGGC CCGTCGGTCGCCGCAATGGAATTTCGTCCACGGTACTCACGGCGCCGCCGCCCAGTGGGACCCATGGCTGCTCCAGCGACGACAGTGAAGGATGCTCCTC CTGCTGCTGCTGCTGCCACCAACGACGTCCATGGCGATGCTGATGAGCAACACCCTGGCTATGGTGATCACGGCGAGGTCGACGACCGCAAGCCTCGACGCAGATCATGCTTGTGAGGTGAGCAATGGCACGCGACTACATATTGGCTGTGCTGTGAATTGTGATCCTCGTTCTTCATGCATACGCCGCTCTCGGCGCTGCTGGCTGGTGATCAACGATGCATATATACATATGTG GTATATTTTTACAGGTTTCCCCCCCAATAAAGAGACATTAGTTGCTAAaaaa ]
[-] EMBL CB683114 [ CCACCTATGGCGATAAACAGATCAGTC CTCCGAAGGAAGGCGCAGCTGGGAAGCCGCCTATGGTGGTCCCGGCGGCAAATCATCCGCAAGCTCCCACCGGCGAGGAGGCTAAGAAGGCTCACGGCGGCGGCGGCGCCGTCGGTCGCCGCAATGGAATTTCGTCCACGGTACTCACGGCGCCGCCG CCAGTGGGACCCACGGCTGCTCCAGCGACGACAGTGAAGGATGCTCCTCCTGCTGCTGCTGCTGCTGCCGCCAACGACGTCCATGGCGATGCTGATGAGCAACACCCTGGCTATGGTGATCACGGCGAGGTCGACGACCGCAAGCCTCGACGCAGATCATGGTTGTGAGGTGAGCAATGGCACGCAACTACATATTGGCTGTGCTGTGAATTGTGATCCTCGTTCTTTATGCATATGCCGCTCTCGGCGCTGCTGGCTGGTGATCAACGATGCATATATACATATGTGCTATATATATTTTTACAGGTTT GCAAAAAATAAAGAGACATTAGTTGCTAATTGTTGTTCTTGTGCCCTAACTAGTTTGGGTGTAATATTGTGTTAATTGTTGTATTTTAGTATGTGCACTTGTATGGGTGTTGATGAATCATGGACATATATCAGTATTGCATGATCTCGATTATAATGCAGAGCAAAATCTGCAAATTTGTTCTTAGGGTTTTATGGAAGGATGTAAATTAATCTTGTCCCTTAAAGG]
consensusID : consensus_6579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[CCTCTGCGGCGGTGACCACCCCGCGAAATATTACGAGGTACCGCCGCCGGGGAGGCACCCGACAGAAGGCCCCTACTACGGCGACGGTGGTCACAAGCCATCACCACCTCCGCATGCCGGCGGCGCCGTCTGCGGCAACGGGGGAGCTGCTCCGCCTGCTCCGAGCGACGTCTCCGGACACCGAGGTCGCGGGCGCCCACCTATGGCGATAAACATGATCAGTCCTCCGAAGGAATGCGCTCCTGGGAAGCCGCCTATGGTGGGCCCGGCGGCAAATCATCCGCCAGCTCCCACCGGCGAGGAGGGTAGCAAGGCTCACTGCGGCTGGACGTCGTTGGCGGCAGCAGCAGCAGCAGCAGGAGGAGCATCCTTCACTGTCGTCGCTGGAGCAGCCGTGGGTCCCACTGGCGGCGGCGCCGTGAGTACCGTGGACGAAATTCCATTGCGGCGACCGACGGCGCCGCCGCCGCCGTGAGCCTTCTTAGCCTCCTCGCCGGTGGGAGCTTGCGGATGATTTGCCGCCGGGACCACCATAGGCGGCTTCCCAGCTGCGCCTTCCTTCGGAGGACTGATCTGTTTATCGCCATAGGTGGGCGCCCG]
[+] EMBL CB683532 [CCTCTGCGGCGGTGACCACCCCGCGAAATATTACGAGGTACCGCCGCCGGGGAGGCACCCGACAGAAGGCCCCTACTACGGCGACGGTGGTCACAAGCCATCACCACCTCCGCATGCCGGCGGCGCCGTCTGCGGCAACGGGGGAGCTGCTCCGCCTGCTCCGAGCGACGTCTCCGGACACCGAGGTCGCGGGCGCCCACCTATGGCGATAAACATGATCAGTCCTCCGAAGGAATGCGCTCCTGGGAAGCCGCCTATGGTGGGCCCGGCGGCAAATCATCCGCCAGCTCCCACCGGCGAGGAGGGTAGCAAGGCTCACTGCGGCTGGACGTCGTTGGCGGCAGCAGCAGCAGCAGCAGGAGGAGCATCCTTCACTGTCGTCGCTGGAGCAGCCGTGGGTCCCACTGGCGGCGGCGCCGTGAGTACCGTGGACGAAATTCCATTGCGGCGACCGACGGCGCCGCCGCCGCCGTGAGCCTTCTTAGCCTCCTCGCCGGTGGGAGCTTGCGGATGATTTGCCGCCGGGACCACCATAGGCGGCTTCCCAGCTGCGCCTTCCTTCGGAGGACTGATCTGTTTATCGCCATAGGTGGGCGCCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6579#0 TTAAGTACATATTAGTTATAGCTAAGAAACGGTGATATTGTTTTTCATATATAACCCTTA 60
consensus_6579#1 ------------------------------------------------------------
consensus_6579#0 AATTGATACCCGAGATCTTCTATAGCTGCTGTAGTAGATATATCCATTTTTGCAGTAAAT 120
consensus_6579#1 ------------------------------------------------------------
consensus_6579#0 TAATTATTAAAAAAATAGGGCACAATATAGCACGAGTAGTGCACGAGACAACAAAGAAAT 180
consensus_6579#1 ------------------------------------------------------------
consensus_6579#0 TATTGATGAGGTAGCTAGCTTTAAGCTGTTGTGGGAGGTCATCGCCTCACCAACTGCATG 240
consensus_6579#1 ------------------------------------------------------------
consensus_6579#0 CTAAATATATCGATAGATATATTATGCTTTGTTATATTCTGTCTTGCCTAACCGGCCGCA 300
consensus_6579#1 ------------------------------------------------------------
consensus_6579#0 TCTCCCCCTTCCTCCACTCACTTTAAGCATCGATCACTGCTTGGTACTACTACGTCGCTT 360
consensus_6579#1 ------------------------------------------------------------
consensus_6579#0 AATCACTTCTTGATTCCTTTGCTAACCTACTACTCCACTACTTGGCCTGCCACAGTTTGA 420
consensus_6579#1 ------------------------------------------------------------
consensus_6579#0 TAGCTAGCTTAGCTAGCTAGCGATCGATCGACGTCGTCGTTGATCCATCGCCACCGGCGC 480
consensus_6579#1 ------------------------------------------------------------
consensus_6579#0 CGGCGGCGATGTGCCTCCCGTTCCTCTGCGGCGGTGACGACCCCGTGAAAAATAGCGAGG 540
consensus_6579#1 ----------------------CCTCTGCGGCGGTGACCACCCCGCGAAATATTACGAGG 38
**************** ****** **** ** *****
consensus_6579#0 TACGGCCGCCGGCGAGGCACCCGAGAGAAGGTCCAAACGACGGCGACGGCGGCCACAAGC 600
consensus_6579#1 TACCGCCGCCGGGGAGGCACCCGACAGAAGGCCCCTACTACGGCGACGGTGGTCACAAGC 98
*** ******** *********** ****** ** ** ********** ** *******
consensus_6579#0 CATCACCACCTCCGCATGCCGGCGGCGCCGTCAACGGCAACGGGGGAGCTGCTCCGCCTG 660
consensus_6579#1 CATCACCACCTCCGCATGCCGGCGGCGCCGTCTGCGGCAACGGGGGAGCTGCTCCGCCTG 158
******************************** **************************
consensus_6579#0 CTCCG-GCGACGTCGCCGGACACCGAGGTC-CGGGCGCCCACCTATGGCGATAAACA-GA 717
consensus_6579#1 CTCCGAGCGACGTCTCCGGACACCGAGGTCGCGGGCGCCCACCTATGGCGATAAACATGA 218
***** ******** *************** ************************** **
consensus_6579#0 TCAGTCCTCCGAAGGAAGGCGCAGCTGGGAAGCCGCCTATGGTGGTCCCGGCGGCAAATC 777
consensus_6579#1 TCAGTCCTCCGAAGGAATGCGCTCCTGGGAAGCCGCCTATGGTGGGCCCGGCGGCAAATC 278
***************** **** ********************* **************
consensus_6579#0 ATCCGCAAGCTCCCACCGGCGAGGAGGCTAAGAAGGCTCACGGCGGCGGCGGCGCCGTCG 837
consensus_6579#1 ATCCGCCAGCTCCCACCGGCGAGGAGGGTAGCAAGGCTCACTGCGGCTG-GACGTCGTTG 337
****** ******************** ** ********* ***** * * ** *** *
consensus_6579#0 GTCGCCGCAATGGAATTTCGTCCACGGTACTCACGGCGCCGCCGCCAGTGGGACCCATGG 897
consensus_6579#1 GCGGCAGCAGCAGCAGCA-GCAGGAGGAGCATCCTTCACTGTCGTCGCTGGAGCAGCCGT 396
* ** *** * * * ** * * * * * ** * *** * *
consensus_6579#0 CTGCTCCAGCGACGACAGTGAAGGATGCTCCTCCTGCTGCTGCTGCTGCTGCCGCCAACG 957
consensus_6579#1 GGGTCCCACTGGCGGCGGCGCCGTGAGTACCGTGGACGA--AATTCCATTGCGGCGACCG 454
* *** * ** * * * * * ** * * * *** ** * **
consensus_6579#0 ACGTCCATGGCGATGCTGATGAGCAACACCCTGGCTATGGTGATCACGGCGAGGTCGACG 1017
consensus_6579#1 ACGGCGCCGCCGCCGCCG-TGAGC--CTTCTTAGCC-TCCTCGCCGGTGGGAGCTTGCGG 510
*** * * ** ** * ***** * * * ** * * * * *** * * *
consensus_6579#0 ACCGCAAGCCTCGACGCAGATCATGGTTGTGAGGTGAGCAATGGCACGCAACTACATATT 1077
consensus_6579#1 ATGATTTGCC---GCCGGGACCACCATAGGCGGCTTCCCAGCTGCGCCTTCCTTCGGAG- 566
* *** * ** ** * * * * ** ** * ** * *
consensus_6579#0 GGCTGTGCTGTGAATTGTGATCCTCGTTCTTTATGCATATGCCGCTCTCGGCGCTGCTGG 1137
consensus_6579#1 GACTGATCTGTTTATCGCCATAGGTGGGCGCCCG-------------------------- 600
* *** **** ** * ** * *
consensus_6579#0 CTGGTGATCAACGATGCATATATACATATGTGCTATATATATTTTTACAGGTTTGCAAAA 1197
consensus_6579#1 ------------------------------------------------------------
consensus_6579#0 AATAAAGAGACATTAGTTGCTAATTGTTGTTCTTGTGCCCTAACTAGTTTGGGTGTAATA 1257
consensus_6579#1 ------------------------------------------------------------
consensus_6579#0 TTGTGTTAATTGTTGTATTTTAGTATGTGCACTTGTATGGGTGTTGATGAATCATGGACA 1317
consensus_6579#1 ------------------------------------------------------------
consensus_6579#0 TATATCAGTATTGCATGATCTCGATTATAATGCAGAGCAAAATCTGCAAATTTGTTCTTA 1377
consensus_6579#1 ------------------------------------------------------------
consensus_6579#0 GGGTTTTATGGAAGGATGTAAATTAATCTTGTCCCTTAAAGG 1419
consensus_6579#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||