These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2225 fasta sequence [CCTCTTCCCCTCTCTTCCACCTCTCGAGCTCTCGCCCCAACGAGATTTCCTCTTTTTCGGGAGGATTTTCCTCTACCCGGATCCGGTTGCTGGTGCCATAGATCGACGCGCCGTCTTCTCCTGATCGCGGTGGTGTTTTTTTTTTTTTTGTTTTGGATTTCCGGTGCTGGGAGTGGAGAGATTCGCTCGGATTGGATCTGTGTGTGCTGATCCGTGTGGGTGGTGGATCTGACGGAGAATCGGAGGAGAGGAAGAGGAGAGTCTGGTTGGTTGGTGGAGACGACGATTTCTGTGGAGGATTCGACTTGCGCATCGGCTGTAGATCTGGAAGGGCTTTGGGTGACCTACTGCTCCAAGCTGCCTAAGTTATATCGCGAAGTGTCGAGCTTTCACGCCCACCGCAATCATCATCACCATCGCCGACGATGGAGGGTCTTGTGGTTATCTCACAGCAGCGCAACCACCATAACCAACACTCTGGTGGCCGAGGCAAGATGACGGGGCCTCACTTCTCATCGCCGCCGTCCTCCCATGGCTTCCGTGGCATGAACTGCCGGTCTTTCCATTCCGGTGTATGTGCTGGCCTCCTGCCCTCCCCACCACCTCCGCCTGCTCGCACGTACTCATCACCAGAGCCTAAGACACCAAAGCAGCAGCAACAGCTGCAGCGCCGTGGTGGCAAGCGTAGCCGGCCCATCTCAATAAGCCCTTCAACTTCTCCTCCATCCCGCCCTGAGCTGTGGGCGGGCCCAGCATTCTCCAATTCACCACCTCCTAGTTCGCTCCCAATCCCCAAGTTCTCTCTGCGACAGAACCGCAGCATCTCACTTGAATTGCCACTATTTGAGCGGTCTGATGAAGTGGAGGTGAAGCCGCATGCTAAATCGGCTCCTTCCTCGCCGGTGGGTGGATCAGGGTTTGACTTCTTCAATGATAATGAAACTGCTGTTGCGACGGAGAATCTTAGGAGGATTCTCCATCTGGATATTTCCGATCATTGAATGATGGGAGGATGGAAGGGTAGTGTCTGTGTACATAGGTTATCATCCACTGACTTTAGTTGTTCACATGCATAGTAGTGTATAGAGTAATGAGAATAATAAGTTAGGTAGTACTGTATGGTCAAGGTTATGGTGGAGGTGGAGTTTTGTAGGTGAAGCATCTTCTGAAAGTTGGGTAGTGAAAACTGTCATATGTAGGTGTTGTTAAGGTGGACAGTGGGGTAAGGATAGGGTGGATGGCAGTTGACATACCTTCATAGCTTGGGCTCACCTATGATGTTTTAGGTGTAGTATAAAATCTTATTTGCATCCATGGCACCTGTGATGAACTGACAGTGGCACTCTGCCAGTGCAGAAACATCTGCGGTTAGTTCATTTCAGGTAGAATAGCATAGTCTGGCAGCTTGTTAACGATAGCATACATTCTAGTATCTTAGACCCCAATCAGATGTTAAATAGTTCTAGGGAAACTACTTTTCTTGCATTTCTTTGCATATATATAACCTCCTGGCTAACTGATTCTCACCCTTCAACCATCCTGACCTCCCTGGTGCTCTGCAAAGAACACCAATATATCTCCTCACTGGCTCTTCTGCTTTTTGGAAGGAAGAAGCTGGGTGGAAGATGGAAGCTGTCCCCTCTCTTGCTCCCTTCTATGTCAATACTAACTTTTTCCCAGTTTGCTGCATATCTATCATGACATGTTCTCTCCACCTTCATTCATTCTAGATTCATCTCATGTCTCTTCACAAGTTGCATTTAGTACCAACCTATATTCAAATCATCATACACCCTCCGAATCCCTTTCCGCTTTCATGAGCTCTAGTTTTCTACTTCTCTTCAAGCCTCGATGGTCTTGAGGAACAAAGTTAGACAATGATGTCTGCGGAACATGCAAGTCCCAATATGGTTGGCTTTGCTGTTCATATTTACCCTATGTGAAGACTTGGAAGTTACCTGTCTTAGTTCCTGCTACATTACTATGTTTGCCACCTAGCAGTCAAGAAGCACTTTGCTGGAGTATTAGTTCTGTCAATTGTAATTCCAATCTTAGATGGCTGTCCATGTTGATGTTCTGGTGTAAATCAGCAGGCATAGTGTTAACAAATAATGTTACTATCCCATTAATCAGAACTATATAATATTATTATGTTTTATATTACAACTAAATGCCATTGATAGCCAATTTTTTATTATATTCTAATTTCTCANAAAAAAAAAAAA] [+] EMBL AK103624 [CCTCTTCCCCTCTCTTCCACCTCTCGAGCTCTCGCCCCAACGAGATTTCCTCTTTTTCGGGAGGATTTTCCTCTACCCGGATCCGGTTGCTGGTGCCATAGATCGACGCGCCGTCTTCTCCTGATCGCGGTGGTGTTTTTTTTTTTTTTGTTTTGGATTTCCGGTGCTGGGAGTGGAGAGATTCGCTCGGATTGGATCTGTGTGTGCTGATCCGTGTGGGTGGTGGATCTGACGGAGAATCGGAGGAGAGGAAGAGGAGAGTCTGGTTGGTTGGTGGAGACGACGATTTCTGTGGAGGATTCGACTTGCGCATCGGCTGTAGATCTGGAAGGGCTTTGGGTGACCTACTGCTCCAAGCTGCCTAAGTTATATCGCGAAGTGTCGAGCTTTCACGCCCACCGCAATCATCATCACCATCGCCGACGATGGAGGGTCTTGTGGTTATCTCACAGCAGCGCAACCACCATAACCAACACTCTGGTGGCCGAGGCAAGATGACGGGGCCTCACTTCTCATCGCCGCCGTCCTCCCATGGCTTCCGTGGCATGAACTGCCGGTCTTTCCATTCCGGTGTATGTGCTGGCCTCCTGCCCTCCCCACCACCTCCGCCTGCTCGCACGTACTCATCACCAGAGCCTAAGACACCAAAGCAGCAGCAACAGCTGCAGCGCCGTGGTGGCAAGCGTAGCCGGCCCATCTCAATAAGCCCTTCAACTTCTCCTCCATCCCGCCCTGAGCTGTGGGCGGGCCCAGCATTCTCCAATTCACCACCTCCTAGTTCGCTCCCAATCCCCAAGTTCTCTCTGCGACAGAACCGCAGCATCTCACTTGAATTGCCACTATTTGAGCGGTCTGATGAAGTGGAGGTGAAGCCGCATGCTAAATCGGCTCCTTCCTCGCCGGTGGGTGGATCAGGGTTTGACTTCTTCAATGATAATGAAACTGCTGTTGCGACGGAGAATCTTAGGAGGATTCTCCATCTGGATATTTCCGATCATTGAATGATGGGAGGATGGAAGGGTAGTGTCTGTGTACATAGGTTATCATCCACTGACTTTAGTTGTTCACATGCATAGTAGTGTATAGAGTAATGAGAATAATAAGTTAGGTAGTACTGTATGGTCAAGGTTATGGTGGAGGTGGAGTTTTGTAGGTGAAGCATCTTCTGAAAGTTGGGTAGTGAAAACTGTCATATGTAGGTGTTGTTAAGGTGGACAGTGGGGTAAGGATAGGGTGGATGGCAGTTGACATACCTTCATAGCTTGGGCTCACCTATGATGTTTTAGGTGTAGTATAAAATCTTATTTGCATCCATGGCACCTGTGATGAACTGACAGTGGCACTCTGCCAGTGCAGAAACATCTGCGGTTAGTTCATTTCAGGTAGAATAGCATAGTCTGGCAGCTTGTTAACGATAGCATACATTCTAGTATCTTAGACCCCAATCAGATGTTAAATAGTTCTAGGGAAACTACTTTTCTTGCATTTCTTTGCATATATATAACCTCCTGGCTAACTGATTCTCACCCTTCAACCATCCTGACCTCCCTGGTGCTCTGCAAAGAACACCAATATATCTCCTCACTGGCTCTTCTGCTTTTTGGAAGGAAGAAGCTGGGTGGAAGATGGAAGCTGTCCCCTCTCTTGCTCCCTTCTATGTCAATACTAACTTTTTCCCAGTTTGCTGCATATCTATCATGACATGTTCTCTCCACCTTCATTCATTCTAGATTCATCTCATGTCTCTTCACAAGTTGCATTTAGTACCAACCTATATTCAAATCATCATACACCCTCCGAATCCCTTTCCGCTTTCATGAGCTCTAGTTTTCTACTTCTCTTCAAGCCTCGATGGTCTTGAGGAACAAAGTTAGACAATGATGTCTGCGGAACATGCAAGTCCCAATATGGTTGGCTTTGCTGTTCATATTTACCCTATGTGAAGACTTGGAAGTTACCTGTCTTAGTTCCTGCTACATTACTATGTTTGCCACCTAGCAGTCAAGAAGCACTTTGCTGGAGTATTAGTTCTGTCAATTGTAATTCCAATCTTAGATGGCTGTCCATGTTGATGTTCTGGTGTAAATCAGCAGGCATAGTGTTAACAAATAATGTTACTATCCCATTAATCAGAACTATATAATATTATTATGTTTTA ] [+] EMBL CK085197 [ TCTTCCACCTCTCGAGCTCTCGCCCCAACGAGATTTCCTCTTTTTCGGGAGGATTTTCCTCTACCCGGATCCGGTTGCTGGTGCCATAGATCGACGCGCCGTCTTCTCCTGATCGCGGTGGTG ] [+] EMBL CA755171 [ AATTCCNATCTTAGATGGCTGTCCATGTTGATGTTCTGGTGTAAATCAGCAGGCATAGTGTTAACAAATAATGTTACTATCCCATTAATCAGAACTATATAATATTATTATGTTTTATATTACAACTAAATGCCATTGATAGCCAATTTTTTATTATATTCTAATTTCTCANAAAAAAAAAAAA] consensusID : consensus_6582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [AGGAGGATTCTCCATCTGGATATTTCCGATCATTGAATGATGGGAGGATGGAAGGGTAGTGTCTGTGTACATAGGTTATCATCCACTGACTTTAGTTGTTCACATGCATAGTAGTGTATAGAGTAATGAGAATAATAAGTTAGGTAGTACTGTATGGTCAAGGTTATGGTGGAGGTGGAGTTTTGTAGGTGAAGCATCTTCTGAAAGTTGGGTAGTGAAATCTGTCGTATAGTACCGATGATATGGAGAACTGAGCGGCAGGTACAGGGTCGCTGAATTTGAGTATTTTCTTCGAACCTGACTGTACTACCCGGCCGGTAGAGCTTGTGCGCTTAATGAGAGCTTGTGTATGCTGGATTTGGTGGTGTCATCGTGTTCCGTACCGACGATTCGGAGTTTTAGGGCGGCCCGTAAGTTACCCTTCTGGGAGTGATCGGACCGAGCCGACCCGGAAGCCGCGCAGAGCCACCTGTGACGCCTGGGCATACGGCAGCCGGTGGATACAGTGCCCGCATTACAGACCCGGTCTGCCCGTCCCGTCGCCGCGCCCCGCCGCTGTGAGCAGACGCGCCGTCGTAGGACCGCCGTGACGACGCCACGGTCTCCAG] [+] EMBL CA755788 [AGGAGGATTCTCCATCTGGATATTTCCGATCATTGAATGATGGGAGGATGGAAGGGTAGTGTCTGTGTACATAGGTTATCATCCACTGACTTTAGTTGTTCACATGCATAGTAGTGTATAGAGTAATGAGAATAATAAGTTAGGTAGTACTGTATGGTCAAGGTTATGGTGGAGGTGGAGTTTTGTAGGTGAAGCATCTTCTGAAAGTTGGGTAGTGAAATCTGTCGTATAGTACCGATGATATGGAGAACTGAGCGGCAGGTACAGGGTCGCTGAATTTGAGTATTTTCTTCGAACCTGACTGTACTACCCGGCCGGTAGAGCTTGTGCGCTTAATGAGAGCTTGTGTATGCTGGATTTGGTGGTGTCATCGTGTTCCGTACCGACGATTCGGAGTTTTAGGGCGGCCCGTAAGTTACCCTTCTGGGAGTGATCGGACCGAGCCGACCCGGAAGCCGCGCAGAGCCACCTGTGACGCCTGGGCATACGGCAGCCGGTGGATACAGTGCCCGCATTACAGACCCGGTCTGCCCGTCCCGTCGCCGCGCCCCGCCGCTGTGAGCAGACGCGCCGTCGTAGGACCGCCGTGACGACGCCACGGTCTCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6582#0 CCTCTTCCCCTCTCTTCCACCTCTCGAGCTCTCGCCCCAACGAGATTTCCTCTTTTTCGG 60 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 GAGGATTTTCCTCTACCCGGATCCGGTTGCTGGTGCCATAGATCGACGCGCCGTCTTCTC 120 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 CTGATCGCGGTGGTGTTTTTTTTTTTTTTGTTTTGGATTTCCGGTGCTGGGAGTGGAGAG 180 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 ATTCGCTCGGATTGGATCTGTGTGTGCTGATCCGTGTGGGTGGTGGATCTGACGGAGAAT 240 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 CGGAGGAGAGGAAGAGGAGAGTCTGGTTGGTTGGTGGAGACGACGATTTCTGTGGAGGAT 300 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 TCGACTTGCGCATCGGCTGTAGATCTGGAAGGGCTTTGGGTGACCTACTGCTCCAAGCTG 360 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 CCTAAGTTATATCGCGAAGTGTCGAGCTTTCACGCCCACCGCAATCATCATCACCATCGC 420 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 CGACGATGGAGGGTCTTGTGGTTATCTCACAGCAGCGCAACCACCATAACCAACACTCTG 480 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 GTGGCCGAGGCAAGATGACGGGGCCTCACTTCTCATCGCCGCCGTCCTCCCATGGCTTCC 540 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 GTGGCATGAACTGCCGGTCTTTCCATTCCGGTGTATGTGCTGGCCTCCTGCCCTCCCCAC 600 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 CACCTCCGCCTGCTCGCACGTACTCATCACCAGAGCCTAAGACACCAAAGCAGCAGCAAC 660 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 AGCTGCAGCGCCGTGGTGGCAAGCGTAGCCGGCCCATCTCAATAAGCCCTTCAACTTCTC 720 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 CTCCATCCCGCCCTGAGCTGTGGGCGGGCCCAGCATTCTCCAATTCACCACCTCCTAGTT 780 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 CGCTCCCAATCCCCAAGTTCTCTCTGCGACAGAACCGCAGCATCTCACTTGAATTGCCAC 840 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 TATTTGAGCGGTCTGATGAAGTGGAGGTGAAGCCGCATGCTAAATCGGCTCCTTCCTCGC 900 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 CGGTGGGTGGATCAGGGTTTGACTTCTTCAATGATAATGAAACTGCTGTTGCGACGGAGA 960 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 ATCTTAGGAGGATTCTCCATCTGGATATTTCCGATCATTGAATGATGGGAGGATGGAAGG 1020 consensus_6582#1 -----AGGAGGATTCTCCATCTGGATATTTCCGATCATTGAATGATGGGAGGATGGAAGG 55 ******************************************************* consensus_6582#0 GTAGTGTCTGTGTACATAGGTTATCATCCACTGACTTTAGTTGTTCACATGCATAGTAGT 1080 consensus_6582#1 GTAGTGTCTGTGTACATAGGTTATCATCCACTGACTTTAGTTGTTCACATGCATAGTAGT 115 ************************************************************ consensus_6582#0 GTATAGAGTAATGAGAATAATAAGTTAGGTAGTACTGTATGGTCAAGGTTATGGTGGAGG 1140 consensus_6582#1 GTATAGAGTAATGAGAATAATAAGTTAGGTAGTACTGTATGGTCAAGGTTATGGTGGAGG 175 ************************************************************ consensus_6582#0 TGGAGTTTTGTAGGTGAAGCATCTTCTGAAAGTTGGGTAGTGAAAACTGTCATATGTAGG 1200 consensus_6582#1 TGGAGTTTTGTAGGTGAAGCATCTTCTGAAAGTTGGGTAGTGAAATCTGTCGTATAGTAC 235 ********************************************* ***** *** consensus_6582#0 TGTTGTTAAGGTGGACAGTGGGGTAAGGATAGGGTGGATGGCAGTTGACATACCTTCATA 1260 consensus_6582#1 CGATGATATGGAGAACTGAGCGGCAGGTACAGGGTCGCTG--AATTTGAGTATTTTC--- 290 * ** ** ** * ** * * ** * * * ***** * ** * ** ** *** consensus_6582#0 GCTTGGGCTCACCTATGATGTTTTAGGTGTAGTATAAAATCTTATTTGCATCCATGGCAC 1320 consensus_6582#1 -TTCGAACCTGACTGTACTACCCGGCCGGTAG------AGCTTGTGCGC-TTAATGAGAG 342 * * * ** * * **** * *** * ** * *** * consensus_6582#0 CTGTGATGAACTGACAGTGGCACTCTGCCAGTGCAGAAACATCTGCGGTTAGTTCATTTC 1380 consensus_6582#1 CTTGTGTATGCTGGATTTGGTGGTGTCATCGTGTTCCG-TACCGACGATTCGGAGTTTTA 401 ** * *** *** * * *** * * ** ** * *** consensus_6582#0 AGGTAGAATAGCATAGTCTGGCAGCTTGTTAACGATAGCATACATTCTAGTATCTTAGAC 1440 consensus_6582#1 GGGCGGC---CCGTAAGTTACCCTTCTGGGAGTGATCGGACCGAGCCGA----CCCGGAA 454 ** * * ** * * ** * *** * * * * * * ** consensus_6582#0 CCCAATCAGATGTTAAATAGTTCTAGGGAAACTACTTTTCTTGCATTTCTTTGCATATAT 1500 consensus_6582#1 GCCGCGCAGA-GCCA------CCTGTGACGCCTGGGCATACGGCAGC-CGGTGGATACA- 505 ** **** * * ** * ** * *** * ** *** * consensus_6582#0 ATAACCTCCTGGCTAACTGATTCTCACCCTTCAACCATCCTGACCTCCCTGGTGCTCTGC 1560 consensus_6582#1 GTGCCCGCATTACAGACCCGGTCTGCCCGTCCCGTCGCCGCG----CCCCGCCGCTGTGA 561 * ** * * * ** *** ** * * * * * *** * *** ** consensus_6582#0 AAAGA-ACACCAATATATCTCCTCACTGGCTCTTCTGCTTTTTGGAAGGAAGAAGCTGGG 1619 consensus_6582#1 GCAGACGCGCCGTCGTAGGACCGCCGTGACGACGCCACGGTCTCCAG------------- 608 *** * ** ** ** * ** * * * * * * consensus_6582#0 TGGAAGATGGAAGCTGTCCCCTCTCTTGCTCCCTTCTATGTCAATACTAACTTTTTCCCA 1679 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 GTTTGCTGCATATCTATCATGACATGTTCTCTCCACCTTCATTCATTCTAGATTCATCTC 1739 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 ATGTCTCTTCACAAGTTGCATTTAGTACCAACCTATATTCAAATCATCATACACCCTCCG 1799 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 AATCCCTTTCCGCTTTCATGAGCTCTAGTTTTCTACTTCTCTTCAAGCCTCGATGGTCTT 1859 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 GAGGAACAAAGTTAGACAATGATGTCTGCGGAACATGCAAGTCCCAATATGGTTGGCTTT 1919 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 GCTGTTCATATTTACCCTATGTGAAGACTTGGAAGTTACCTGTCTTAGTTCCTGCTACAT 1979 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 TACTATGTTTGCCACCTAGCAGTCAAGAAGCACTTTGCTGGAGTATTAGTTCTGTCAATT 2039 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 GTAATTCCAATCTTAGATGGCTGTCCATGTTGATGTTCTGGTGTAAATCAGCAGGCATAG 2099 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 TGTTAACAAATAATGTTACTATCCCATTAATCAGAACTATATAATATTATTATGTTTTAT 2159 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 ATTACAACTAAATGCCATTGATAGCCAATTTTTTATTATATTCTAATTTCTCANAAAAAA 2219 consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 AAAAAA 2225 consensus_6582#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||