These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6596#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1305 fasta sequence [CCTTGCTTTTTCATATTTTGTTGCCTCTACATCTCACCTTTCCCTTGTGCTGCAGTTGTGTATAGTAGGAGAAGCTGATTTCTATATCTCTCTTCCCCTCTCTCCTAAAGATCACTACCAGAAAGAAGTCATGCTCTCCTGCTTGATCCTTGGATATCAGTGGATCTTGGAAGAAACAAGCAGCAACTAAGAAAATCTGCCACATATTGCTGTTGTCTTTCTTCGTCAGATCATCAGATCTATCCTCTTCGACCACAAATAGGTGTAGCTAGCTAGCTCGCCGGAAATGGCATCCTCGTCGAGCACCAGCAACTCCGCCATCTCCTCGGTGGTCGCGTCGGCGGTGGCCACGACGACGCCGGGCGCCGGATCGCCGTGCGCGGCGT-GCAAGTTCCTGCGGCGGAAGTGCCTGCCGGGCTGCGTGTTCGCTCCTTACTTCCCGCCGGAGGAGCCGCAGAAGTTCGCCAACGTCCACAAGGTGTTCGGCGCCAGTAACGTCACCAAGCTCCTCAACGAGCTGCTGCCGCACCAGCGGGAGGACGCCGTGAGCTCGCTCGCGTACGAGGCCGAGGCCCGCGTCAAGGACCCCGTCTACGGCTGCGTCGGCGCCATCTCCGTCCTCCAGCGCCAGGTCCACCGCCTCCAGAAGGAGCTCGACACCGCGCACGCCGAGCTCCTCCGCTACGCCTGCGGCGAGGTCGGCATCCCCACCGCGCTCCCCGTCACCGCCGCCCCGAGGCTCGCCGCGGCAATGCCGGCACCAGGCCAGCTCGCCGCCGCCGTCAGTGCCGGGATGTACGGCGGCGGCCGGAGGCTCGGGGTCATCGACGGCGGCGGGATAGCGCCGCCTTCCCCCCACACGGCCGGGTGCTACTACGCCCGCAACAACAACGCCGGGAGCATCGGCGCTGACGTGGCGCCCGTCCTACCTTACGCTTCCGTGGCTAATTGGACAGTGAACGCCATTAGCACCACCACCACCAACTCAGGATCAGAGAGCATTGGGATGGATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAGGAAGATGGCAGCCCATTCATCCCAGGTTAATTAAGAGTTAAGAAGCAACCTATCTATCTATCTATATATAGCCAGCATGAATTATATATATCATCTCCCCGTCCCTTTTTGCATGTTGTGCAAAACCATACTTTGGAGTTCTATATGTAATCGAATCGAGATCTTGATCTCTCGTCTTTTCATGATTAATTCG] [+] EMBL AK105527 [CCTTGCTTTTTCATATTTTGTTGCCTCTACATCTCACCTTTCCCTTGTGCTGCAGTTGTGTATAGTAGGAGAAGCTGATTTCTATATCTCTCTTCCCCTCTCTCCTAAAGATCACTACCAGAAAGAAGTCATGCTCTCCTGCTTGATCCTTGGATATCAGTGGATCTTGGAAGAAACAAGCAGCAACTAAGAAAATCTGCCACATATTGCTGTTGTCTTTCTTCGTCAGATCATCAGATCTATCCTCTTCGACCACAAATAGGTGTAGCTAGCTAGCTCGCCGGAAATGGCATCCTCGTCGAGCACCAGCAACTCCGCCATCTCCTCGGTGGTCGCGTCGGCGGTGGCCACGACGACGCCGGGCGCCGGATCGCCGTGCGCGGCGT GCAAGTTCCTGCGGCGGAAGTGCCTGCCGGGCTGCGTGTTCGCTCCTTACTTCCCGCCGGAGGAGCCGCAGAAGTTCGCCAACGTCCACAAGGTGTTCGGCGCCAGTAACGTCACCAAGCTCCTCAACGAGCTGCTGCCGCACCAGCGGGAGGACGCCGTGAGCTCGCTCGCGTACGAGGCCGAGGCCCGCGTCAAGGACCCCGTCTACGGCTGCGTCGGCGCCATCTCCGTCCTCCAGCGCCAGGTCCACCGCCTCCAGAAGGAGCTCGACACCGCGCACGCCGAGCTCCTCCGCTACGCCTGCGGCGAGGTCGGCATCCCCACCGCGCTCCCCGTCACCGCCGCCCCGAGGCTCGCCGCGGCAATGCCGGCACCAGGCCAGCTCGCCGCCGCCGTCAGTGCCGGGATGTACGGCGGCGGCCGGAGGCTCGGGGTCATCGACGGCGGCGGGATAGCGCCGCCTTCCCCCCACACGGCCGGGTGCTACTACGCCCGCAACAACAACGCCGGGAGCATCGGCGCTGACGTGGCGCCCGTCCTACCTTACGCTTCCGTGGCTAATTGGACAGTGAACGCCATTAGCACCACCACCACCAACTCAGGATCAGAGAGCATTGGGATGGATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAGGAAGATGGCAGCCCATTCATCCCAGGTTAATTAAGAGTTAAGAAGCAACCTATCTATCTATCTATATATAGCCAGCATGAATTATATATATCATCTCCCCGTCCCTTTTTGCATGTTGTGCAAAACCATACTTTGGAGTTCTATATGTAATCGAATCGAGATCTTGATCTCTCGTCTTTTCATGATTAATTCG] [+] EMBL C98868 [ TCCCTTGTGCTGCAGTTGTGTATAGTAGGAGAAGCTGATTTCTATATCTCTCTTCCCCTCTCTCCTAAAGATCACTACCAGAAAGAAGTCATGCTCTCCTGCTTGATCCTTGGATATCAGTGGATCTTGGAAGAAACAAGCAGCAACTAAGAAAATCTGCCACATATTGCTGTTGTCTTTCTTCGTCAGATCATCAGATCTATCCTCTTCGACCACAAATAGGTGTAGCTAGCTAGCTCGCCGGAAATGGCATCCTCGTCGAGCACCAGCAACTCCGCCATCTCCTCGGTGGTCGCGTCGGCGGTGGCCACGACGACGCCGGGCGCCGGATCGCCGTGCGCGG GTGGCAAGTTCCTGCGGCGGAA NGCCTGCCGGGCTGCGTGTTCGCTCCTTACTTCCCGCCGGAGGAGCCGCAGAAGTTCGCC ACGTCCACAANGTGTTCGGGGGCAATAACGTCACCA ] consensusID : consensus_6596#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 778 fasta sequence [ATAGGTGTAGCTAGCTAGCTCGCCGGAAATGGCATCCTCGTCGAGCACCAGCAACTCCGCCATCTCCTCGGTGGTCGCGTCGGCGGTGGCCACGACGACGCCGGGCGCCGGATCGCCGTGCGCGGCGTGCAAGTTCCTGCGGCGGAAGTGCCTGCCGGGCTGCGTGTTCGCTCCTTACTTCCCGCCGGAGGAGCCGCAGAAGTTCGCCAACGTCCACAAGGTGTTCGGCGCCAGTAACGTCACCAAGCTCCTCAACGAGCTGCTGCCGCACCAGCGGGAGGACGCCGTGAGCTCGCTCGCGTACGAGGCCGAGGCCCGCGTCAAGGACCCCGTCTACGGCTGCGTCGGCGCCATCTCCGTCCTCCAGCGCCAGGTCCACCGCCTCCAGAAGGAGCTCGACACCGCGCACGCCGAGCTCCTCCGCTACGCCTGCGGCGAGGTCGGCATCCCCACCGCGCTCCCCGTCACCGCCGCCCCAAGGCTCGCCGCGGCAATGCCGGCACCAGGCCAGCTCGCCGCCGCCGTCGGTGTCGGGATGTACGGCGGCCGCTCGAAGCTCGGGGTCATCGACGGCTGCGGGATAGCTCCATCTTACCCTTACACGGTCCGGTGCTACTACTCCCAGTACAACAACAACACCCGGAAGGATCTGTTTCTGACTTAGTGTCCCATCTACCTTACCCTTATGTGGCTTATTTTTCAGTTGACCGCTTATTTCGACCAACCTGACTTAGGCTTCATGGTGTTTTGCTGTTTCTCAGGTGGGTGTAACTATTTT] [+] EMBL BE041023 [ATAGGTGTAGCTAGCTAGCTCGCCGGAAATGGCATCCTCGTCGAGCACCAGCAACTCCGCCATCTCCTCGGTGGTCGCGTCGGCGGTGGCCACGACGACGCCGGGCGCCGGATCGCCGTGCGCGGCGTGCAAGTTCCTGCGGCGGAAGTGCCTGCCGGGCTGCGTGTTCGCTCCTTACTTCCCGCCGGAGGAGCCGCAGAAGTTCGCCAACGTCCACAAGGTGTTCGGCGCCAGTAACGTCACCAAGCTCCTCAACGAGCTGCTGCCGCACCAGCGGGAGGACGCCGTGAGCTCGCTCGCGTACGAGGCCGAGGCCCGCGTCAAGGACCCCGTCTACGGCTGCGTCGGCGCCATCTCCGTCCTCCAGCGCCAGGTCCACCGCCTCCAGAAGGAGCTCGACACCGCGCACGCCGAGCTCCTCCGCTACGCCTGCGGCGAGGTCGGCATCCCCACCGCGCTCCCCGTCACCGCCGCCCCAAGGCTCGCCGCGGCAATGCCGGCACCAGGCCAGCTCGCCGCCGCCGTCGGTGTCGGGATGTACGGCGGCCGCTCGAAGCTCGGGGTCATCGACGGCTGCGGGATAGCTCCATCTTACCCTTACACGGTCCGGTGCTACTACTCCCAGTACAACAACAACACCCGGAAGGATCTGTTTCTGACTTAGTGTCCCATCTACCTTACCCTTATGTGGCTTATTTTTCAGTTGACCGCTTATTTCGACCAACCTGACTTAGGCTTCATGGTGTTTTGCTGTTTCTCAGGTGGGTGTAACTATTTT] consensusID : consensus_6596#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [CCCCTTCCCCCCACANGNCCGGGTGCTACTACGCCCGCAACAACACGCCCGGGAGCATCGGCGCTGACGTGGCGCCCGTCCTACTTACGCTTCCGTGGCTATTGGACAGTGAACGCCATTAGCACCACCACCACCAACTCAGGATCAGAGAGCATTGGGATGGATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAGGAAGATGGCAGCCCATTCATCCCAGGTTAATTAAGAGTTAAGAAGCAACCTATCTATCTATCTATATATAGCCAGCATGAATTATATATATCATCTCCCCGTCCCTTTTTGCATGTTGTGCAAAACCATACTTTGGNGTTCTATATGTAATCGAATCGNGNTCTTAAAAAAAAAAAAAAAAA] [+] EMBL C98869 [CCCCTTCCCCCCACANGNCCGGGTGCTACTACGCCCGCAACAACACGCCCGGGAGCATCGGCGCTGACGTGGCGCCCGTCCTACTTACGCTTCCGTGGCTATTGGACAGTGAACGCCATTAGCACCACCACCACCAACTCAGGATCAGAGAGCATTGGGATGGATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAGGAAGATGGCAGCCCATTCATCCCAGGTTAATTAAGAGTTAAGAAGCAACCTATCTATCTATCTATATATAGCCAGCATGAATTATATATATCATCTCCCCGTCCCTTTTTGCATGTTGTGCAAAACCATACTTTGGNGTTCTATATGTAATCGAATCGNGNTCTTAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6596#0 CCTTGCTTTTTCATATTTTGTTGCCTCTACATCTCACCTTTCCCTTGTGCTGCAGTTGTG 60 consensus_6596#2 ------------------------------------------------------------ consensus_6596#1 ------------------------------------------------------------ consensus_6596#0 TATAGTAGGAGAAGCTGATTTCTATATCTCTCTTCCCCTCTCTCCTAAAGATCACTACCA 120 consensus_6596#2 ------------------------------------------------------------ consensus_6596#1 ------------------------------------------------------------ consensus_6596#0 GAAAGAAGTCATGCTCTCCTGCTTGATCCTTGGATATCAGTGGATCTTGGAAGAAACAAG 180 consensus_6596#2 ------------------------------------------------------------ consensus_6596#1 ------------------------------------------------------------ consensus_6596#0 CAGCAACTAAGAAAATCTGCCACATATTGCTGTTGTCTTTCTTCGTCAGATCATCAGATC 240 consensus_6596#2 ------------------------------------------------------------ consensus_6596#1 ------------------------------------------------------------ consensus_6596#0 TATCCTCTTCGACCACAAATAGGTGTAGCTAGCTAGCTCGCCGGAAATGGCATCCTCGTC 300 consensus_6596#2 ------------------------------------------------------------ consensus_6596#1 ------------------------------------------------------------ consensus_6596#0 GAGCACCAGCAACTCCGCCATCTCCTCGGTGGTCGCGTCGGCGGTGGCCACGACGACGCC 360 consensus_6596#2 ------------------------------------------------------------ consensus_6596#1 ------------------------------------------------------------ consensus_6596#0 GGGCGCCGGATCGCCGTGCGCGGCGTGCAAGTTCCTGCGGCGGAAGTGCCTGCCGGGCTG 420 consensus_6596#2 ------------------------------------------------------------ consensus_6596#1 ------------------------------------------------------------ consensus_6596#0 CGTGTTCGCTCCTTACTTCCCGCCGGAGGAGCCGCAGAAGTTCGCCAACGTCCACAAGGT 480 consensus_6596#2 ------------------------------------------------------------ consensus_6596#1 ------------------------------------------------------------ consensus_6596#0 GTTCGGCGCCAGTAACGTCACCAAGCTCCTCAACGAGCTGCTGCCGCACCAGCGGGAGGA 540 consensus_6596#2 ------------------------------------------------------------ consensus_6596#1 ------------------------------------------------------------ consensus_6596#0 CGCCGTGAGCTCGCTCGCGTACGAGGCCGAGGCCCGCGTCAAGGACCCCGTCTACGGCTG 600 consensus_6596#2 ------------------------------------------------------------ consensus_6596#1 ------------------------------------------------------------ consensus_6596#0 CGTCGGCGCCATCTCCGTCCTCCAGCGCCAGGTCCACCGCCTCCAGAAGGAGCTCGACAC 660 consensus_6596#2 ------------------------------------------------------------ consensus_6596#1 --------ATAGGTGTAGCTAGCTAGCTCGCCGGAAATGGCATCCTCGTCGAGCACCAGC 52 consensus_6596#0 CGCGCACGCCGAGCTCCTCCGCTACGCCTGCGGCGAGGTCGGCATCCCCACCGCGCTCCC 720 consensus_6596#2 ------------------------------------------------------------ consensus_6596#1 AACTCCGCCATCTCCTCGGTGGTCGCGTCGGCGGTGGCCACGACGACGCCGGGCGCCGGA 112 consensus_6596#0 CGTCACCGCCGCCCCGAGGCTCGCCGCGGCAATGCCGGCACCAGGCCAGCTCGCCGCCGC 780 consensus_6596#2 ------------------------------------------------------------ consensus_6596#1 TCGCCGTGCGCGGCGTGCAAGTTCCTGCGGCGGAAGTGCCTGCCGGGCTGCGTGTTCGCT 172 consensus_6596#0 CGTCAGTGCCGGGATGTACGGCGGCGGCCGGAGGCTCGGGGTCATCGACGGCGGCGGGAT 840 consensus_6596#2 ------------------------------------------------------------ consensus_6596#1 CCTTACTTCCCGCCGGAGGAGCCGCAGAAGTTCGCCAACGTCCACAAGGTGTTCGGCGCC 232 consensus_6596#0 AGCGCCGCCTTCCCCCCACACGGCCGGGTGCTACTACGCCCGCAACAACAACGCCGGGAG 900 consensus_6596#2 -----CCCCTTCCCCCCACANGNCCGGGTGCTACTACGCCCGCAACAACACGCCCGGGAG 55 consensus_6596#1 AGTAACGTCACCAAGCTCCTCAACGAGCTGCTGCCGCACCAGCGGGAGGACG-CCGTGAG 291 * * * * * * * **** * * ** ** * * *** *** consensus_6596#0 CATCGGCGCTGACGTGGC----GCCCGTCCTACCTTACGCTTCCGTGGCTAATTGGACA- 955 consensus_6596#2 CATCGGCGCTGACGTGGC----GCCCGTCCTAC-TTACGCTTCCGTGGCTA-TTGGACA- 108 consensus_6596#1 CTCGCTCGCGTACGAGGCCGAGGCCCGCGTCAAGGACCCCGTCTACGGCTGCGTCGGCGC 351 * *** *** *** ***** * * * ** **** * * * consensus_6596#0 -GTGAACGCCATT-AGCACCACCACCACCAACTCAGGAT-----------CAGAGAGCAT 1002 consensus_6596#2 -GTGAACGCCATT-AGCACCACCACCACCAACTCAGGAT-----------CAGAGAGCAT 155 consensus_6596#1 CATCTCCGTCCTCCAGCGCCAGGTCCACCGCCTCCAGAAGGAGCTCGACACCGCGCACGC 411 * ** * * *** *** ***** *** ** * * * * consensus_6596#0 TGGGATGGATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAG-CGCGGCAAATAA 1061 consensus_6596#2 TGGGATGGATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAG-CGCGGCAAATAA 214 consensus_6596#1 CGAGCTCCTCCGCTACGCCTGCGGCGAGGTCGGCATCCCCACCGCGCTCCCCGTCACCGC 471 * * * * * * * * ** ** * **** * * * * * * consensus_6596#0 TGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGG------------AGAGGCTT 1109 consensus_6596#2 TGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGG------------AGAGGCTT 262 consensus_6596#1 CGCCCCAAGGCTCGCCGCGGCAATGCCGGCACCAGGCCAGCTCGCCGCCGCCGTCGGTGT 531 * * *** *** ** * * * * * ** * consensus_6596#0 CAGGAAG-ATGGCAGCCCATTCAT-CCCAGGTTAATTAAGAGTTAAGAAGCAAC-CTATC 1166 consensus_6596#2 CAGGAAG-ATGGCAGCCCATTCAT-CCCAGGTTAATTAAGAGTTAAGAAGCAAC-CTATC 319 consensus_6596#1 CGGGATGTACGGCGGCCGCTCGAAGCTCGGGGTCATCGACGGCTGCGGGATAGCTCCATC 591 * *** * * *** *** * * * * ** * ** * * * * * * * *** consensus_6596#0 T-ATCTATCTATATATAGCCAGCATGAATTATAT----ATATCATCTCCCCG-----TCC 1216 consensus_6596#2 T-ATCTATCTATATATAGCCAGCATGAATTATAT----ATATCATCTCCCCG-----TCC 369 consensus_6596#1 TTACCCTTACACGGTCCGGTGCTACTACTCCCAGTACAACAACAACACCCGGAAGGATCT 651 * * * * * * * * * * * * ** * *** * ** consensus_6596#0 CTTTTTG-CATGTTGTGCAAA--ACCATACTTTGGAGT--TCTATATGTAATCGAATCGA 1271 consensus_6596#2 CTTTTTG-CATGTTGTGCAAA--ACCATACTTTGGNGT--TCTATATGTAATCGAATCGN 424 consensus_6596#1 GTTTCTGACTTAGTGTCCCATCTACCTTACCCTTATGTGGCTTATTTTTCAGTTGACCGC 711 *** ** * * *** * * *** *** * ** *** * * * * ** consensus_6596#0 GATCTTGATCTCTCGTCTTTTCATGATTAATTCG-------------------------- 1305 consensus_6596#2 GNTCTTAAAAAAAAAAAAAAAAA------------------------------------- 447 consensus_6596#1 TTATTTCGACCAACCTGACTTAGGCTTCATGGTGTTTTGCTGTTTCTCAGGTGGGTGTAA 771 ** consensus_6596#0 ------- consensus_6596#2 ------- consensus_6596#1 CTATTTT 778 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||