These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence [GCCGCGCCGCCCCCCCGTCGACCGCGATCTTCCAGTCCGCACCCCGCCGCGATGGCCGACGCCGGCAAGCCCGACCCCGCGTCGCCGCCGGAGGCGCCGTCGGCGAAGAAGGGGGTCTTCATGCGCCGCATCTTCCCGTTCCTCCTCGCCGCCAACATCTTCATCGGAGTTTACGTATTTGCAAAGACCTACAAGAGAGACCAGGAAAAGAAGAACGCTCAGACTGCTGCTGCTGCAGCTGCAGTTGTAGCATTGTCATCCCCAGCTGCCCCAGCTGCTGAGACTGTAGATCCTACTCCTCCAACTCCTCCACCCAAAAGAGTGCTTCCACCAATACCCGAAGACGAACAGCGCCAGGTCTACAAGTGGATGCTGGAAGAGAAGCGGAAGATCAAGCCACGCAATGCTGCTGAGAAGAACAAGATCAACGAAGAGAAGGCGCTTCTCAAGGAGTTCATCAGGGCAGAGTCTCTTCCCCGTTTGTGATTAGCATCTCACTGGCTGCCCTGCTGGCCTTGTTTTTTTTTTTCTTTTGCCTGCTGTTCCATGGAAGGACATGTTCTGGATTTTACACTTGTCTCTTGTTTGTTGGCAGAAACGGTAGCATTTTGTATGGTGTCAAGTAATCATTTGTTACCCAAAATACTGAGTCAAGTGGCTCCAGTTTCAGGGAACTCTGGCA] [+] EMBL AK111319 [GCCGCGCCGCCCCCCCGTCGACCGCGATCTTCCAGTCCGCACCCCGCCGCGATGGCCGACGCCGGCAAGCCCGACCCCGCGTCGCCGCCGGAGGCGCCGTCGGCGAAGAAGGGGGTCTTCATGCGCCGCATCTTCCCGTTCCTCCTCGCCGCCAACATCTTCATCGGAGTTTACGTATTTGCAAAGACCTACAAGAGAGACCAGGAAAAGAAGAACGCTCAGACTGCTGCTGCTGCAGCTGCAGTTGTAGCATTGTCATCCCCAGCTGCCCCAGCTGCTGAGACTGTAGATCCTACTCCTCCAACTCCTCCACCCAAAAGAGTGCTTCCACCAATACCCGAAGACGAACAGCGCCAGGTCTACAAGTGGATGCTGGAAGAGAAGCGGAAGATCAAGCCACGCAATGCTGCTGAGAAGAACAAGATCAACGAAGAGAAGGCGCTTCTCAAGGAGTTCATCAGGGCAGAGTCTCTTCCCCGTTTGTGATTAGCATCTCACTGGCTGCCCTGCTGGCCTTGTTTTTTTTTTTCTTTTGCCTGCTGTTCCATGGAAGGACATGTTCTGGATTTTACACTTGTCTCTTGTTTGTTGGCAGAAACGGTAGCATTTTGTATGGTGTCAAGTAATCATTTGTTACCCAAAATACTGAGTCAAGTGGCTCCAGTTTCAGGGAACTCTGGCA] [+] EMBL AA749727 [ GCTTCCACCAATACCCGAAGACGAACAACGCCAGGTCTACAAGTGGATGCTGGAAGAGAAGCGGAAGATCAAGCCACGCAATGCTGCTGAGAAGAACAAGATCAACGAAGAGAAGGTGCTTCTCAAGGAGTTCATCAGGGCAGAGTCTCTTCCCCGTTTGTGATTAGCATTTCACTGGCTGCCCTGCT ] consensusID : consensus_6618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [CCCCAGTCCGCCCCCGCCGCGTTGCCGACCCCGCAACCCGGACCCCGCTGTCCCCGCCGGAGGCGCCCGTCGGCGAAGAAGGGGTTCTTCATGCCCGCATCTTCCCGTTCCTCCTCGCCGCCAACATCTTCATCGGAGTTTATGTATTGTGCAAAGACCCTACCAAGAGAGACCCACGGAAAAGAAGAACCGCTCCAGACCTGCTGCTGCTGCCAGCTCCAGTTCAGCATTGTCATCCCCAGCTGCCCCCAGCTGCTGAGACTGTAGATCCTGCTCCTCCAACTCCTCCACCCCACAAAGAGTACTTCCACCCAATACCCCAGACGAGCAGCGCCAGGTCTACAAGTGGATGCTGGAAGAGAAGCGGAAGATCAAGCCACCAATGCCGCTGAGAAGAGCAAGATCAACGAAGAGAAGGCTCTTCTCAAGGAGTTCATCAGGGCAGAGTCTCTCCCTCGTTTGTGATTGTTATCACTGGCTGCCCTGCTGGGCCTTGGTTTTTCGCTTTGCCCCAGATCCACGTGAGGACGTGTTCTGGATTTTGCACTTGTCTCTTGTTAGTTGCAGAAATGATGACCCTTTGTATGTTGTGTCCAAAAAAAAAA] [+] EMBL BI799637 [CCCCAGTCCGCCCCCGCCGCGTTGCCGACCCCGCAACCCGGACCCCGCTGTCCCCGCCGGAGGCGCCCGTCGGCGAAGAAGGGGTTCTTCATGCCCGCATCTTCCCGTTCCTCCTCGCCGCCAACATCTTCATCGGAGTTTATGTATTGTGCAAAGACCCTACCAAGAGAGACCCACGGAAAAGAAGAACCGCTCCAGACCTGCTGCTGCTGCCAGCTCCAGTTCAGCATTGTCATCCCCAGCTGCCCCCAGCTGCTGAGACTGTAGATCCTGCTCCTCCAACTCCTCCACCCCACAAAGAGTACTTCCACCCAATACCCCAGACGAGCAGCGCCAGGTCTACAAGTGGATGCTGGAAGAGAAGCGGAAGATCAAGCCACCAATGCCGCTGAGAAGAGCAAGATCAACGAAGAGAAGGCTCTTCTCAAGGAGTTCATCAGGGCAGAGTCTCTCCCTCGTTTGTGATTGTTATCACTGGCTGCCCTGCTGGGCCTTGGTTTTTCGCTTTGCCCCAGATCCACGTGAGGACGTGTTCTGGATTTTGCACTTGTCTCTTGTTAGTTGCAGAAATGATGACCCTTTGTATGTTGTGTCCAAAAAAAAAA] consensusID : consensus_6618#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [AAAGAAGAACGCTCAGACTGCTGCTGCTGCAGCTGCAGTTGCAGCATTGTCATCCCCAGCTGCCCCAGCTGCTGAGACTGTAGATCCTGCTCCTCCAACTCCTCCACCCAAAAGAGTACTTCCACCAATACCCCAAGACGAGCAGCGCCACGGTCTACCAAGTGGATGCCTGGAAGAGAAGCCGGAAGATTCAAGCCACCGCAATGCCCGCCTGAGAAGAGCCAAGATTCAACCGAAGAGAAGGCTCTTCTCCAAGGAGTTCACTCCACGGGCAGACGTCTCTCCCTCGTTTGTGATTGTTATCACCTGGCTGCCCCTGCTGGGCCCTTGGTTTTTCGTTTGCCCGCAGATCCACGTGAGGACCGTGTTCTGGATTTTGCACCTTGTCTCTTGTTAGTTGGCAGAAATGATGACACTTTGTACCTCTCGTGTCAAAAAAAAAA] [+] EMBL BI798140 [AAAGAAGAACGCTCAGACTGCTGCTGCTGCAGCTGCAGTTGCAGCATTGTCATCCCCAGCTGCCCCAGCTGCTGAGACTGTAGATCCTGCTCCTCCAACTCCTCCACCCAAAAGAGTACTTCCACCAATACCCCAAGACGAGCAGCGCCACGGTCTACCAAGTGGATGCCTGGAAGAGAAGCCGGAAGATTCAAGCCACCGCAATGCCCGCCTGAGAAGAGCCAAGATTCAACCGAAGAGAAGGCTCTTCTCCAAGGAGTTCACTCCACGGGCAGACGTCTCTCCCTCGTTTGTGATTGTTATCACCTGGCTGCCCCTGCTGGGCCCTTGGTTTTTCGTTTGCCCGCAGATCCACGTGAGGACCGTGTTCTGGATTTTGCACCTTGTCTCTTGTTAGTTGGCAGAAATGATGACACTTTGTACCTCTCGTGTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6618#1 -----------------------------CCCCAGTCCGC-CCCCGCCGCGTTG-CCGAC 29 consensus_6618#2 ------------------------------------------------------------ consensus_6618#0 GCCGCGCCGCCCCCCCGTCGACCGCGATCTTCCAGTCCGCACCCCGCCGCGATGGCCGAC 60 consensus_6618#1 CCCGCAACCCGGACCCCGCTGTCCCCGCCGGAGGCGCCCGTCGGCGAAGAAGGGGTTCTT 89 consensus_6618#2 ------------------------------------------------------------ consensus_6618#0 GCCGGCAAGCCCGACCCCGCGTCGCCGCCGGAGGCGCC-GTCGGCGAAGAAGGGGGTCTT 119 consensus_6618#1 CATGC-CCGCATCTTCCCGTTCCTCCTCGCCGCCAACATCTTCATCGGAGTTTATGTATT 148 consensus_6618#2 ------------------------------------------------------------ consensus_6618#0 CATGCGCCGCATCTTCCCGTTCCTCCTCGCCGCCAACATCTTCATCGGAGTTTACGTATT 179 consensus_6618#1 GTGCAAAGACCCTACCAAGAGAGACCCACGGAAAAGAAGAACCGCTCCAGACCTGCTGCT 208 consensus_6618#2 --------------------------------AAAGAAGAAC-GCTC-AGAC-TGCTGCT 25 consensus_6618#0 -TGCAAAGAC----CTACAAGAGAGACCAGGAAAAGAAGAAC-GCTC-AGAC-TGCTGCT 231 ********** **** **** ******* consensus_6618#1 GCTGCCAGCTCCAGTT-CAGCATTGTCATCCCCAGCTGCCCCCAGCTGCTGAGACTGTAG 267 consensus_6618#2 GCTGC-AGCTGCAGTTGCAGCATTGTCATCCCCAGCTGCCCC-AGCTGCTGAGACTGTAG 83 consensus_6618#0 GCTGC-AGCTGCAGTTGTAGCATTGTCATCCCCAGCTGCCCC-AGCTGCTGAGACTGTAG 289 ***** **** ***** ************************ ***************** consensus_6618#1 ATCCTGCTCCTCCAACTCCTCCACCCCACAAAGAGTACTTCCACCCAATACCCCA-GACG 326 consensus_6618#2 ATCCTGCTCCTCCAACTCCTCCACCCAA--AAGAGTACTTCCACC-AATACCCCAAGACG 140 consensus_6618#0 ATCCTACTCCTCCAACTCCTCCACCCAA--AAGAGTGCTTCCACC-AATACCCGAAGACG 346 ***** ******************** * ****** ******** ******* * **** consensus_6618#1 AGCAGCGCCA-GGTCTAC-AAGTGGATGC-TGGAAGAGAAGC-GGAAGAT-CAAGCCACC 381 consensus_6618#2 AGCAGCGCCACGGTCTACCAAGTGGATGCCTGGAAGAGAAGCCGGAAGATTCAAGCCACC 200 consensus_6618#0 AACAGCGCCA-GGTCTAC-AAGTGGATGC-TGGAAGAGAAGC-GGAAGAT-CAAGCCACG 401 * ******** ******* ********** ************ ******* ******** consensus_6618#1 --AATGCC--GCTGAGAAGAGC-AAGATCAA--CGAAGAGAAGGCTCTTCTC-AAGGAGT 433 consensus_6618#2 GCAATGCCCGCCTGAGAAGAGCCAAGATTCAACCGAAGAGAAGGCTCTTCTCCAAGGAGT 260 consensus_6618#0 -CAATGCT--GCTGAGAAGAAC-AAGATCAA--CGAAGAGAAGGCGCTTCTC-AAGGAGT 454 ***** ********* * ***** * ************ ****** ******* consensus_6618#1 TCATCA---GGGCAGA-GTCTCTCCCTCGTTTGTGATTGTTATCAC--TGGCTGCCC-TG 486 consensus_6618#2 TCACTCCACGGGCAGACGTCTCTCCCTCGTTTGTGATTGTTATCACC-TGGCTGCCCCTG 319 consensus_6618#0 TCATCA---GGGCAGA-GTCTCTTCCCCGTTTGTGATTAGCATCTCACTGGCTGCCC-TG 509 *** ******* ****** ** *********** *** * ********* ** consensus_6618#1 CTGGGCC----TTGGTTTTTCGCTTTGCCCCAGATCCACGTGAGGAC-GTGTTCTGGATT 541 consensus_6618#2 CTGGGCCC---TTGGTTTTTCGTTTGCCCGCAGATCCACGTGAGGACCGTGTTCTGGATT 376 consensus_6618#0 CTGGCCTTGTTTTTTTTTTTCTTTTGCCTGCTGTTCCATGGAAGGAC-ATGTTCTGGATT 568 **** * ** ****** ** * * * **** * ***** *********** consensus_6618#1 TTGCAC-TTGTCTCTTGTTAGTTG-CAGAAATGATGACCCTTTGTA--TGTTGTGTCCAA 597 consensus_6618#2 TTGCACCTTGTCTCTTGTTAGTTGGCAGAAATGATGACACTTTGTACCTCTCGTGTCAAA 436 consensus_6618#0 TTACAC-TTGTCTCTTGTTTGTTGGCAGAAACGGTAGCATTTTGTA----TGGTGTCAAG 623 ** *** ************ **** ****** * * * ****** * ***** * consensus_6618#1 AAAAAAAA--------------------------------------------------- 605 consensus_6618#2 AAAAAAA---------------------------------------------------- 443 consensus_6618#0 TAATCATTTGTTACCCAAAATACTGAGTCAAGTGGCTCCAGTTTCAGGGAACTCTGGCA 682 ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||