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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6646 cluster # 6646       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6646#0 length = 514 sequences # 3  
consensus_6646#1 length = 391 sequences # 1  

consensusID : consensus_6646#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 514
fasta sequence
                              [CTGTTTGTGGAGCAAATACGCAACTGTGGTGGGACATGCAATCCTTGCGGCAATCCTATGGAACCGCTCACGGTCGATTGATCTGACAAGC-AAAACTGCAATCACTTCTTTCTACATGTTTATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCGATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGGACGGCGCCCCATAAAATCACCTGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGATATTGATAGATCATCGTCGGCACCATCATTCCTCTGAAAGATTTCGCACGGCATTTCAACCTCCAACTCCCAACGTACCCCAAAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATAATAAAGCTCTGGGTTACTGTCCGCTCAAAAA]

[+] EMBL AA750728             [CTGTTTGTGGAGCAAATACGCAACTGTGGTGGGACATGCAATCCTTGCGGCAATCCTATGGAACCGCTCACGGTCGATTGATCTGACAAGC AAAACTGCAATCACTTCTTTCTACATGTTTATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCGATTACTC        CAGGTAGATTGGAATTGGATCATGGCTGGATGGATGA                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA767514             [                TACGCAACTGTGGTGGGACATGCAATCCTTGCGGCAATCCTATGGAACCGCTCACGGTCGATTGATCTGACAAGC AAAACCGCAATCACTTCTTTCTACATGTTTATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCGATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGGACGGCGCCCCATAAAATCACCTGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGATATTGATAGATCATCGTCGGCACCATCATTCCTCTGAAAGATTTCGCACGGCATTTCAACCTCCAACTCCCAACGTACCCCAAAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATAATAAAGCTCTGGGTTACT             ]
[+] EMBL AU029707             [                     AACTGTGGTGGAACATGCAATCCTTGCGGCAATCCTATGNACCCGCTCACGGTCGATTGATCTGACAAGCAAAAACTGCAATCACTTCTTTCTACATGTTTATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCGATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGGACGGCGCCCCATAAAATCACCTGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGATATTGATAGATCATCGTCGGCACCATCATTCCTCTGAAAGATTTCGCACGGCATTTCAACCTCCAACTCCCAACGTACCCCAAAAAAAGTAACTAGGCCNGGTGAGCATCTGCTAGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATAATAAAGCTCTGGGTTACTGTCCGCTCAAAAA]


>consensus_6646#0 CTGTTTGTGGAGCAAATACGCAACTGTGGTGGGACATGCAATCCTTGCGGCAATCCTATG GAACCGCTCACGGTCGATTGATCTGACAAGCAAAACTGCAATCACTTCTTTCTACATGTT TATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCG ATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGGACGG CGCCCCATAAAATCACCTGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATA TGATATTGATAGATCATCGTCGGCACCATCATTCCTCTGAAAGATTTCGCACGGCATTTC AACCTCCAACTCCCAACGTACCCCAAAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGC CTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATC ATAATAAAGCTCTGGGTTACTGTCCGCTCAAAAA



consensusID : consensus_6646#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence
                              [ATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTTAAGTGACAAAGGCAATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGACGGCGCCCCATAAAATCACCTGGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGATATTGATAGATCATCGTCGGCACACATCATTCCTCTGAAAGATTTCGCACGGCATTTCAACACTCCAACTCCCAACGTACCCCAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATAATAAAGCTCTGGGTTACTGTCAAAAAAAAAA]

[+] EMBL BI795167             [ATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTTAAGTGACAAAGGCAATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGACGGCGCCCCATAAAATCACCTGGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGATATTGATAGATCATCGTCGGCACACATCATTCCTCTGAAAGATTTCGCACGGCATTTCAACACTCCAACTCCCAACGTACCCCAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATAATAAAGCTCTGGGTTACTGTCAAAAAAAAAA]


>consensus_6646#1 ATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTTAAGTGACAAAGGCAATT ACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGACGGCGCC CCATAAAATCACCTGGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGA TATTGATAGATCATCGTCGGCACACATCATTCCTCTGAAAGATTTCGCACGGCATTTCAA CACTCCAACTCCCAACGTACCCCAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGCCTA TAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATA ATAAAGCTCTGGGTTACTGTCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6646#0      CTGTTTGTGGAGCAAATACGCAACTGTGGTGGGACATGCAATCCTTGCGGCAATCCTATG 60
consensus_6646#1      ------------------------------------------------------------
                                                                                  

consensus_6646#0      GAACCGCTCACGGTCGATTGATCTGACAAGCAAAACTGCAATCACTTCTTTCTACATGTT 120
consensus_6646#1      ------------------------------------------------------------
                                                                                  

consensus_6646#0      TATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCG 180
consensus_6646#1      -ATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTT--AAGTGACAAAGGCA 57
                       ******************************************   * *********** 

consensus_6646#0      ATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGGACGG 240
consensus_6646#1      ATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACG-ACGG 116
                      ******************************************************* ****

consensus_6646#0      CGCCCCATAAAATCACCTG-CAAATCACCCGGTACACATGTTGACATCCTGCATCCAGAT 299
consensus_6646#1      CGCCCCATAAAATCACCTGGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGAT 176
                      ******************* ****************************************

consensus_6646#0      ATGATATTGATAGATCATCGTCGGCAC-CATCATTCCTCTGAAAGATTTCGCACGGCATT 358
consensus_6646#1      ATGATATTGATAGATCATCGTCGGCACACATCATTCCTCTGAAAGATTTCGCACGGCATT 236
                      *************************** ********************************

consensus_6646#0      TCAAC-CTCCAACTCCCAACGTACCCCAAAAAAAGTAACTAGGCCAGGTGAGCATCTGCT 417
consensus_6646#1      TCAACACTCCAACTCCCAACGTACCCCAAAAA--GTAACTAGGCCAGGTGAGCATCTGCT 294
                      ***** **************************  **************************

consensus_6646#0      AGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATC 477
consensus_6646#1      AGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATC 354
                      ************************************************************

consensus_6646#0      ATCATAATAAAGCTCTGGGTTACTGTCCGCTCAAAAA 514
consensus_6646#1      ATCATAATAAAGCTCTGGGTTACTGTCAAAAAAAAAA 391
                      ***************************     *****




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)