Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6660 cluster # 6660       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6660#0 length = 926 sequences # 4  

consensusID : consensus_6660#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 926
fasta sequence
                              [CACCGCCATGGCTTGCAGGCCGGCCGTGTGCTCCCCCTCCGCCCTCGCGCCGCCGCGCCACCGCCTCCTCTCCCTCGGCTGCGCGCGCACCGCCGCCCCCTCGGGCGGACTCCCGCTCCGCCTCCGCCTCCGCTCCAGCCCCGCGCCCCGCGGCCACGGCGCCGACCTCGTCGTCCGCGCGGCGGCCGCAGAGGGGGCCGTGGAGCTGCAGGCGAAGGTGAACAGCAAATGCTTCTTCGACGTCGAGGTCGGCGGGGAGCCCGCGGGGAGGATCGTCATCGGGCTCTTCGGGGAAGTCGTCCCCAAGACGGTGGACAACTTCCGCGCCCTGTGCACTGGTGATAAGGGCTACGGGTACAAGGGTTGCTCCTTCCACCGAATCATCAAGGACTTCATGATTCAGGGCGGGGACTTCCAGAACAACAATGGTACTGGTGGTAGGAGTATCTATGGTGAATGTTTTGACGATGAAAATTTTACATTAAAGCACACCGGTCCTGGTGTACTAAGCATGGCAAACGCTGGCCCTGACACAAATGGAAGCCAATTTTTCATTTGTACTGTGAAGACACCATGGTTGGACAATCGTCACGTTGTCTTTGGGCATGTCTTGGAGGGGATGGACGTGGTGAAGAATCTTGAATCACAAGAAACCAGCAGGTCCGATATTCCTAAGCAGCCCTGCAGAATCGTGAATTGTGGCGAGCTGCCCGTGGACGGTTGATTAAGTCAAATGGTTCAGTTGTCGGATTAAGCCAACATTTTTCATTTTGTTCTGCGGCATATTGAATCTTAGGGGAGGGCTAATTGAATCTTGTTCTGTTAGAACACTTTTGGTATAGTGAGGATACTTGCGAGGCATTCGGCAAGATAGATGAACATCCCTCTTATCCAGTGATATCCTGTTTGATGAGCTTAGAACTTTA]

[+] EMBL CA758731             [CACCGCCATGGCTTGCAGGCCGGCCGTGTGCTCCCCCTCCGCCCTCGCGCCGCCGCGCCACCGCCTCCTCTCCCTCGGCTGCGCGCGCACCGCCGCCCCCTCGGGCGGACTCCCGCTCCGCCTCCGCCTCCGCTCCAGCCCCGCGCCCCGCGGCCACGGCGCCGACCTCGTCGTCCGCGCGGCGGCCGCAGAGGGGGCCGTGGAGCTGCAGGCGAAGGTGAACAGCAAATGCTTCTTCGACGTCGAGGTCGGCGGGGAGCCCGCGGGGAGGATCGTCATCGGGCTCTTCGGGGAAGTCGTCCCCAAGACGGTGGACAACTTCCGCGCCCTGTGCACTGGTGATAAGGGCTACGGGTACAAGGGTTGCTCCTTCCACCGAATCATCAAGGACTTCATGATTCAGGGCGGGGACTTCCAGAACAACAATGGTACTGGTGGTAGGAGTATCTATGGTGAATGTTTTGACGATGAAAATTTTACATTAAAGCACACCGGTCCTGGTGTACTAAGCATGGCAAACGCTGGCCCTGACACAAATGGAAGCCAATTTTTCATTTGTACTGTGAAGACACCATGGATGGACAATCGTCACGTTGTCTTTGGG                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB648533             [                                                                        CCTCGGCTGCGCGCGCACCGCCGCCCCCTCGGGCGGACTCCCGCTCCGCCTCCGCCTCCGCTCCAGCCCCGCGCCCCGCGGCCACGGCGCCGACCTCGTCGTCCGCGCGGCGGCCGCAGAGGGGGCCGTGGAGCTGCAGGCGAAGGTGAACAGCAAATGCTGCTTCGACGTCGAGGTCGGCGGGGAGCCCGCGGGGAGGATCGTCATCGGGCTCTTCGGGGAAGTCGTCCCCAAGACGGTGGACAACTTCCGCGCCCTGTGCACTGGTGATAAGGGCTACGGGTACAAGGGTTGCTCCTTCCACCGAATCATCAAGGACTTCATGATTCAGGGCGGGGACTTCCAGAACAACAATGGTACTGGTGGTAGGAGTATCTATGGTGAATGTTTTGACGATGAAAATTTTACATTAAAGCACACCGGTCCTGGTGTACTAAGCATGGCAAACGCTGGCCCTGACACAAATGGAAGCCAATTTTTCATTTGTACTGTGAAGACACCATGGTTGGACAATCGTCACGTTGTCTTTGGGCATGTCTTGGAGGGGATGGACGTGGTGAAGAATCTTGAATCACAAGAAACCAGCAGGTCCGATATTCCTAAGCAGCCCTGCAGAATCGTGAATTGTGGCGAGCTGCCCGTGGACGGTTGATTAAGTCAAATGGTTCAGTTGTCGGATTAAGCCAACATTTTTCATTTTGTTCTGCGGCATATTGAATCTTAGGGGAGGGCTAATTGAATCTTGTTCTGTTAGAACACTTTTGGTATAGTGAGGATACTTGCGAGGCATTCCGCAAGA                                                       ]
[+] EMBL CB680431             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACACCGCCCCTGGTGTACTAAGCATGGCAAACGCTGGCCCTGACACAAATGGAAGCCAATTTTTCATTTGTACTGTGAAGACACCATGGTTGGACAATCGTCACGTTGTCTTTGGGCATGTCTTGGAGGGGATGGACGTGGTGAAGAATCTTGAATCACAAGAAACCAGCAGGTCCGATATTCCTAAGCAGCCCTGCAGAATCGTGAATTGTGGCGAGCTGCCCGTGGACGGTTGATTAAGTCAAATGGTTCAGTTGTCGGATTAAGCCAACATTTTTCATTTTGTTCTGCGGCATATTGAATCTTAGGGGAGGGCTAATTGAATCTTGTTCTGTTAGAACACTTTTGGTATAGTGAGGATACTTGCGAGGCATTCGGCAAGATAGATGAACATCCCTCTTATCCAGTGATATCCTGTTTGATGAGCTTAGAACTTTA]
[+] EMBL AA751270             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CAGCCCTGCAGAATCGTGAATTGTGGCGAGCTGCCCGTGGACGGTTGATTAAGTCAAATGGTTCAGTTGTCGGATTAAGCCAACATTTTTCATTTTGTTCTGCGGCATATTGAATCTTAGGGGAGGGCTAATTGAATCTTGTTCTGTTAGAACACTTTTGGTATAGTGAGGATACTTGCGAGGCATTCGGCAAGATAGATGAA                                               ]


>consensus_6660#0 CACCGCCATGGCTTGCAGGCCGGCCGTGTGCTCCCCCTCCGCCCTCGCGCCGCCGCGCCA CCGCCTCCTCTCCCTCGGCTGCGCGCGCACCGCCGCCCCCTCGGGCGGACTCCCGCTCCG CCTCCGCCTCCGCTCCAGCCCCGCGCCCCGCGGCCACGGCGCCGACCTCGTCGTCCGCGC GGCGGCCGCAGAGGGGGCCGTGGAGCTGCAGGCGAAGGTGAACAGCAAATGCTTCTTCGA CGTCGAGGTCGGCGGGGAGCCCGCGGGGAGGATCGTCATCGGGCTCTTCGGGGAAGTCGT CCCCAAGACGGTGGACAACTTCCGCGCCCTGTGCACTGGTGATAAGGGCTACGGGTACAA GGGTTGCTCCTTCCACCGAATCATCAAGGACTTCATGATTCAGGGCGGGGACTTCCAGAA CAACAATGGTACTGGTGGTAGGAGTATCTATGGTGAATGTTTTGACGATGAAAATTTTAC ATTAAAGCACACCGGTCCTGGTGTACTAAGCATGGCAAACGCTGGCCCTGACACAAATGG AAGCCAATTTTTCATTTGTACTGTGAAGACACCATGGTTGGACAATCGTCACGTTGTCTT TGGGCATGTCTTGGAGGGGATGGACGTGGTGAAGAATCTTGAATCACAAGAAACCAGCAG GTCCGATATTCCTAAGCAGCCCTGCAGAATCGTGAATTGTGGCGAGCTGCCCGTGGACGG TTGATTAAGTCAAATGGTTCAGTTGTCGGATTAAGCCAACATTTTTCATTTTGTTCTGCG GCATATTGAATCTTAGGGGAGGGCTAATTGAATCTTGTTCTGTTAGAACACTTTTGGTAT AGTGAGGATACTTGCGAGGCATTCGGCAAGATAGATGAACATCCCTCTTATCCAGTGATA TCCTGTTTGATGAGCTTAGAACTTTA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)