These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 939 fasta sequence [ATTGTTCGGATTCAAGAGTAGTCAGCCTCACTCTCTTCCTCCAAATCATTGGTGCTGCTGCTACTGTGTACCGGAGATGAACGGCGCTGGTGGTGCGGGAGGAGCAGCGGCAGGGAAGTTGCCAATGGTGAGCCACCGACGGGT-GCAGTGCAGACTAGCGGACAAGCGGTGTGAGCTCCGGGAGGAAGAGATGGAGTATATCCGGCAGTTCCACCGCCACGAGCCCAGCAGCAACCAGTGCACCTCGTTCGTCGCCAAGCATATCAAGGCGCCCCTCCAAACCGTTTGGTCACTAGTGAGGAGGTTTGATCAGCCACAACTTTTCAAACCTTTTGTGAGAAAGTGCGTAATGCGAGAAAACATTATTGTGACCGGATGTGTTAGGGAGGTCAATGTTCAAAGCGGGCTTCCAGCCACAAGGAGCACTGAGAGGTTAGAGTTGCTTGATGATAACGAACATATCCTCAAAGTCAAGTTTATTGGGGGCGATCATATGTTGAAGAATTACTCATCCATCCTAACCATCCACTCTGAGGTCATCGATGGCCAACTTGGAACATTGGTGGTCGAATCATTTGTAGTGGATATTCCAGATGGGAACACCAAAGACGACATATGCTATTTCATCGAGAACGTTCTCAGGTGCAACCTTATGACCCTTGCTGATGTGTCAGAGGAGCGCCTTGCCAATCCTTGATCTCACTCTGCTTTCTTGGTTGATTGATGATCAGAATAATCCAT-ATATAAAATTGGTGGACCTTATTGAAACTCTCAGAAAACATCAGAGCTTCTTGATCGACATTGCATACTAAAGCTTGTTCTATAGAATTTAGAGCAATTAAGGCACTCACTTCAGT-TTACTACAAACATATGTGCAACTTTGTTACTTCGCTCGTGCAAAAAAATGTCGAACTGAGATGAAACAACGTTACTTTGATG] [+] EMBL AK108261 [ATTGTTCGGATTCAAGAGTAGTCAGCCTCACTCTCTTCCTCCAAATCATTGGTGCTGCTGCTACTGTGTACCGGAGATGAACGGCGCTGGTGGTGCGGGAGGAGCAGCGGCAGGGAAGTTGCCAATGGTGAGCCACCGACGGGT GCAGTGCAGACTAGCGGACAAGCGGTGTGAGCTCCGGGAGGAAGAGATGGAGTATATCCGGCAGTTCCACCGCCACGAGCCCAGCAGCAACCAGTGCACCTCGTTCGTCGCCAAGCATATCAAGGCGCCCCTCCAAACCGTTTGGTCACTAGTGAGGAGGTTTGATCAGCCACAACTTTTCAAACCTTTTGTGAGAAAGTGCGTAATGCGAGAAAACATTATTGTGACCGGATGTGTTAGGGAGGTCAATGTTCAAAGCGGGCTTCCAGCCACAAGGAGCACTGAGAGGTTAGAGTTGCTTGATGATAACGAACATATCCTCAAAGTCAAGTTTATTGGGGGCGATCATATGTTGAAGAATTACTCATCCATCCTAACCATCCACTCTGAGGTCATCGATGGCCAACTTGGAACATTGGTGGTCGAATCATTTGTAGTGGATATTCCAGATGGGAACACCAAAGACGACATATGCTATTTCATCGAGAACGTTCTCAGGTGCAACCTTATGACCCTTGCTGATGTGTCAGAGGAGCGCCTTGCCAATCCTTGATCTCACTCTGCTTTCTTGGTTGATTGATGATCAGAATAATCCAT ATATAAAATTGGTGGACCTTATTGAAACTCTCAGAAAACATCAGAGCTTCTTGATCGACATTGCATACTAAAGCTTGTTCTATAGAATTTAGAGCAATTAAGGCACTCACTTCAGT TTACTACAAACATATGTGCAACTTTGTTACTTCGCTCGTGCAAAAAAATGTCGAACTGAGATGAAACAACGTTACTTTGATG] [+] EMBL AA751330 [ TACCGGAGATGAACGGCGCTGGTGGTGCGGGAGGAGCAGCGGCAGGGAAGTTGCCAATGGTGAGCCACCGACGGGTAGCAGTGCAGACTAGCGGACAAGC GTGTGAGCTCCGGGAGGAAGAGATGGAGTATATCCGGCAGTTCCATCGCCACGAGCCCACGACGAACCAGTG ] [+] EMBL BI795882 [ TTCTTGGTTGATTGATGATCAGAATAATCCATGATATAAATTGGGGGGACCTTAGTGAAACTCTCAGGAAACATCAGAGCTTCTTGATCGAC TTGCATACTAAAGCTTGTTCTATAGAATTTAGA C ATCAAGGCACTCACTTCAGTGTTACTAC AACATAGGGGCAACTTTGTTACTTCGCTCGTGCAAAAAAATGTCGAACTGAAATGAAACA ] consensusID : consensus_6662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [CCTCAAGTCAAGTTTATTGGGGGAAATCATATGTTGAAGAATTACTCATCCATCCTGACTGTCCACTCTGAGGTCATCGATGGCCAGCTTGGAACACTGGTGGTCGAATCATTTATTGTGGACGTTCTAGAAGGGAACACCAGAAGATGACATAAGCTATTTCATCGAGAACGTTCTCAGGTGTAACCTTAGGACCCTTGCTGATGTGTCAGAGGAGCGCCTTGCCAATCCTTGATCGCACCTTGCTTTCTTAGTTGATTAATGATCAGAATAATCCATATATAAAATTGGTGGACCGTATTGAAACTCTTAGAAAACACATAGCTTCTTGGTCGACATTGGATACTAAAGCTTCTTTTTTAGAATTTAGAGCATCAAGACACTCACTTCAGTTTACTACAGACATATGTGCAACTTTGTTGTTTACTTCACTCGTGCAAAAAATGTTGAACTGAAATGAAACCTTGATACTCTAAAGGATTGTATTCAGATTTCCTATTCATTAATTCATATGTCTTCTTCTTAGCTATGAAAAA] [+] EMBL BI801433 [CCTCAAGTCAAGTTTATTGGGGGAAATCATATGTTGAAGAATTACTCATCCATCCTGACTGTCCACTCTGAGGTCATCGATGGCCAGCTTGGAACACTGGTGGTCGAATCATTTATTGTGGACGTTCTAGAAGGGAACACCAGAAGATGACATAAGCTATTTCATCGAGAACGTTCTCAGGTGTAACCTTAGGACCCTTGCTGATGTGTCAGAGGAGCGCCTTGCCAATCCTTGATCGCACCTTGCTTTCTTAGTTGATTAATGATCAGAATAATCCATATATAAAATTGGTGGACCGTATTGAAACTCTTAGAAAACACATAGCTTCTTGGTCGACATTGGATACTAAAGCTTCTTTTTTAGAATTTAGAGCATCAAGACACTCACTTCAGTTTACTACAGACATATGTGCAACTTTGTTGTTTACTTCACTCGTGCAAAAAATGTTGAACTGAAATGAAACCTTGATACTCTAAAGGATTGTATTCAGATTTCCTATTCATTAATTCATATGTCTTCTTCTTAGCTATGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6662#0 ATTGTTCGGATTCAAGAGTAGTCAGCCTCACTCTCTTCCTCCAAATCATTGGTGCTGCTG 60 consensus_6662#1 ------------------------------------------------------------ consensus_6662#0 CTACTGTGTACCGGAGATGAACGGCGCTGGTGGTGCGGGAGGAGCAGCGGCAGGGAAGTT 120 consensus_6662#1 ------------------------------------------------------------ consensus_6662#0 GCCAATGGTGAGCCACCGACGGGTGCAGTGCAGACTAGCGGACAAGCGGTGTGAGCTCCG 180 consensus_6662#1 ------------------------------------------------------------ consensus_6662#0 GGAGGAAGAGATGGAGTATATCCGGCAGTTCCACCGCCACGAGCCCAGCAGCAACCAGTG 240 consensus_6662#1 ------------------------------------------------------------ consensus_6662#0 CACCTCGTTCGTCGCCAAGCATATCAAGGCGCCCCTCCAAACCGTTTGGTCACTAGTGAG 300 consensus_6662#1 ------------------------------------------------------------ consensus_6662#0 GAGGTTTGATCAGCCACAACTTTTCAAACCTTTTGTGAGAAAGTGCGTAATGCGAGAAAA 360 consensus_6662#1 ------------------------------------------------------------ consensus_6662#0 CATTATTGTGACCGGATGTGTTAGGGAGGTCAATGTTCAAAGCGGGCTTCCAGCCACAAG 420 consensus_6662#1 ------------------------------------------------------------ consensus_6662#0 GAGCACTGAGAGGTTAGAGTTGCTTGATGATAACGAACATATCCTCAAAGTCAAGTTTAT 480 consensus_6662#1 ------------------------------------------CCTCAA-GTCAAGTTTAT 17 ****** *********** consensus_6662#0 TGGGGGCGATCATATGTTGAAGAATTACTCATCCATCCTAACCATCCACTCTGAGGTCAT 540 consensus_6662#1 TGGGGGAAATCATATGTTGAAGAATTACTCATCCATCCTGACTGTCCACTCTGAGGTCAT 77 ****** ******************************* ** **************** consensus_6662#0 CGATGGCCAACTTGGAACATTGGTGGTCGAATCATTTGTAGTGGATATTCCAGATGGGAA 600 consensus_6662#1 CGATGGCCAGCTTGGAACACTGGTGGTCGAATCATTTATTGTGGACGTTCTAGAAGGGAA 137 ********* ********* ***************** * ***** *** *** ***** consensus_6662#0 CACCA-AAGACGACATATGCTATTTCATCGAGAACGTTCTCAGGTGCAACCTTATGACCC 659 consensus_6662#1 CACCAGAAGATGACATAAGCTATTTCATCGAGAACGTTCTCAGGTGTAACCTTAGGACCC 197 ***** **** ****** **************************** ******* ***** consensus_6662#0 TTGCTGATGTGTCAGAGGAGCGCCTTGCCAATCCTTGATCTCACTCTGCTTTCTTGGTTG 719 consensus_6662#1 TTGCTGATGTGTCAGAGGAGCGCCTTGCCAATCCTTGATCGCACCTTGCTTTCTTAGTTG 257 **************************************** *** ********* **** consensus_6662#0 ATTGATGATCAGAATAATCCATATATAAAATTGGTGGACCTTATTGAAACTCTCAGAAAA 779 consensus_6662#1 ATTAATGATCAGAATAATCCATATATAAAATTGGTGGACCGTATTGAAACTCTTAGAAAA 317 *** ************************************ ************ ****** consensus_6662#0 CATCAGAGCTTCTTGATCGACATTGCATACTAAAGCTTGTTCTATAGAATTTAGAGCAAT 839 consensus_6662#1 CA-CATAGCTTCTTGGTCGACATTGGATACTAAAGCTTCTTTTTTAGAATTTAGAGCA-T 375 ** ** ********* ********* ************ ** * ************** * consensus_6662#0 TAAGGCACTCACTTCAGTTTACTACAAACATATGTGCAACTTTGTT----ACTTCGCTCG 895 consensus_6662#1 CAAGACACTCACTTCAGTTTACTACAGACATATGTGCAACTTTGTTGTTTACTTCACTCG 435 *** ********************* ******************* ***** **** consensus_6662#0 TGCAAAAAAATGTCGAACTGAGATGAAACAACGTTACTTTGATG---------------- 939 consensus_6662#1 TGCAAAAAA-TGTTGAACTGAAATGAAACCTTGATACTCTAAAGGATTGTATTCAGATTT 494 ********* *** ******* ******* * **** * * * consensus_6662#0 ------------------------------------------ consensus_6662#1 CCTATTCATTAATTCATATGTCTTCTTCTTAGCTATGAAAAA 536 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||