These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6679#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1344 fasta sequence [AGGGTGAGGGCGACGGGGGGGAAGGACAGGCACAGCAAGGTGTACACGGCGAAGGGAATCCGCGACCGCCGCGTCCGCCTCTCCGTCGCCACCGCCATCCAGTTCTACGACCTCCAGGACCGCCTCGGCTTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCATCAACGCCGCCTCCCCCGCCATCGACACCCTCCCGTCCCTCGACCCCGCCGCCTTCGCCGCCATTCCCCACGCCGCCGCCGACGCCGCGCCCACGCGGCGGCGTTCGCAGCAGCAGCAGCAGCAGCTCAGCAACAAGTCCGGATGCAGTAGCACGTCGGAGACCAGCAAGGGGTCGGACAAGGAGGTCACCGTGGCGAGCGCCCCGGCGCAGGCCGCGTCGTTCACTGAGCTGCTCATTGCTGGGGTGGCGGCGTCGTCGGCGGGGGGTGGCGCCATTGGCAACGGCGCCGACTGCGTGGGCATCGCGCACCCCGGGAAAGGAGGCGCGGAGGGGGCGTCCACGTACGGCTTCTCCGCCGCCTCGAGCTTCGGCGACGCGCCACCGATCGGCATGGTGCCGGCGCCGCCGTTCAACTTCTCCGCCCCCGGCGCCGACATGGCGGCGCACTACTCGCTCGCCCAGGACCAGCTGGCGGCGCCTCCGCCTCCTGCCGGAGGCGACTACAACCTCAACTTCTCCATGTCCTCGGGTTTCTTGGGTGCCAATAGGGGGACCCTTCAGTCCAATTCG-CCGTCGAACATGTCCGGCCACCACCACCACCACCATCAGCAGCAGCTCCAGAGGCTGGACGGCTCCACCATTTCCTTCCTGCTTGGCCACGCCGCCGCGGCGGCGCACCCGGCGGCGTCCGAGGGCCAGATCACCAGCACCGCCGCGTTGCAGCTGTGGGATGGATTCCGCCACTCCGGCATGAAGGAGAAGAGCAAGAACTGATCGATCCCAGCAACGCATCCTCCAAAGGAACTGAAGATATCATCATCAGATTAATTGTTGTCACCTTTCCAGCAAGAGCTCACCGTGGGGAGCTGCTACAAGTTTATTGCGATGACTGCCCGTGTTCTTTTAGCTGGGTCATCGTTCTGCTATGCTGTTTTTTGGCCATCATGAACACCCTGCCGCTGCTGCTACCTGCCATTGCCATCACTCAGACAATCTTGTGAATTTCCTTCTTTTTCCTAGATGAAGCTGCTGTACAAATTTTTGTGGGAGACGTGAGTTTCGAACAAGAATAAGCGTGTCCCGTAGCCAGCGTTAAACCTTTCCCTTCCAGAAATATTTTTCGAGTGAATTGAAATTCATATGTGCCTCTGGTTATTGGAGTGGCAAAAAAAAAAAAAA] [+] EMBL AB071806 [AGGGTGAGGGCGACGGGGGGGAAGGACAGGCACAGCAAGGTGTACACGGCGAAGGGAATCCGCGACCGCCGCGTCCGCCTCTCCGTCGCCACCGCCATCCAGTTCTACGACCTCCAGGACCGCCTCGGCTTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCATCAACGCCGCCTCCCCCGCCATCGACACCCTCCCGTCCCTCGACCCCGCCGCCTTCGCCGCCATTCCCCACGCCGCCGCCGACGCCGCGCCCACGCGGCGGCGTTCGCAGCAGCAGCAGCAGCAGCTCAGCAACAAGTCCGGATGCAGTAGCACGTCGGAGACCAGCAAGGGGTCGGACAAGGAGGTCACCGTGGCGAGCGCCCCGGCGCAGGCCGCGTCGTTCACTGAGCTGCTCATTGCTGGGGTGGCGGCGTCGTCGGCGGGGGGTGGCGCCATTGGCAACGGCGCCGACTGCGTGGGCATCGCGCACCCCGGGAAAGGAGGCGCGGAGGGGGCGTCCACGTACGGCTTCTCCGCCGCCTCGAGCTTCGGCGACGCGCCACCGATCGGCATGGTGCCGGCGCCGCCGTTCAACTTCTCCGCCCCCGGCGCCGACATGGCGGCGCACTACTCGCTCGCCCAGGACCAGCTGGCGGCGCCTCCGCCTCCTGCCGGAGGCGACTACAACCTCAACTTCTCCATGTCCTCGGGTTTCTTGGGTGCCAATAGGGGGACCCTTCAGTCCAATTCG CCGTCGAACATGTCCGGCCACCACCACCACCACCATCAGCAGCAGCTCCAGAGGCTGGACGGCTCCACCATTTCCTTCCTGCTTGGCCACGCCGCCGCGGCGGCGCACCCGGCGGCGTCCGAGGGCCAGATCACCAGCACCGCCGCGTTGCAGCTGTGGGATGGATTCCGCCACTCCGGCATGAAGGAGAAGAGCAAGAACTGATCGATCCCAGCAACGCATCCTCCAAAGGAACTGAAGATATCATCATCAGATTAATTGTTGTCACCTTTCCAGCAAGAGCTCACCGTGGGGAGCTGCTACAAGTTTATTGCGATGACTGCCCGTGTTCTTTTAGCTGGGTCATCGTTCTGCTATGCTGTTTTTTGGCCATCATGAACACCCTGCCGCTGCTGCTACCTGCCATTGCCATCACTCAGACAATCTTGTGAATTTCCTTCTTTTTCCTAGATGAAGCTGCTGTACAAATTTTTGTGGGAGACGTGAGTTTCGAACAAGAATAAGCGTGTCCCGTAGCCAGCGTTAAACCTTTCCCTTCCAGAAATATTTTTCGAGTGAATTGAAATTCATATGTGCCTCTGGTTATTGGAGTGGCAAAAAAAAAAAAAA] [+] EMBL CB683174 [ ACACCGCGAAGGGAATCCGCGACCGCCGCGTCCGCCTCTCCGTCGCCACCGCCATCCAGTTCTACGACCTCCAGGACCGCCTCGGCTTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCATCAACGCCGCCTCCCCCGCCATCGACACCCTCCCGTCCCTCGACCCCGCCGCCTTCGCCGCCATTCCCCACGCCGCCGCCGACGCCGCGCCCACGCGGCGGCGTTCGCAGCAGCAGCAGCAGCAGCTCAGCAACAAGTCCGGATGCAGTAGCACGTCGGAGACCAGCAAGGGGTCGGACAAGGAGGTCACCGTGGCGAGCGCCCCGGCGCAGGCCGCGTCGTTCACTGAGCTGCTCATTGCTGGGGTGGCGGCGTCGTCGGCGGGGGGTGGCGCCATTGGCAACGGCGCCGACTGCGTGGGCATCGCGCACCCCGGGAAAGGAGGCGCGGAGGGGGCGTCCACGTACGGCTTCTCCGCCGCCTCGAGCTTCGGCGACGCGCCACCGATCGGCATGGTGCCGGCGCCGCCGTTCAACTTCTCCGCCCCCGGCGCCGACATGGCGGCGCACTACTCGCTCGCCCAGGACCAGCTGGCGGCGCCTCCGCCTCCTGCCGGAGGCGACTACAACCTCAACTTCTCCATGTCCTCGGGTTTCTTGGGTGCCAATAGGGGGACCCTTCAGTCCAATTCGCCCGTCG ACATGTCCGGCCACCACCACCACCACCATC ] consensusID : consensus_6679#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence [TCAGAGAGATTCAGAGTAGCTCAGAGTGAGCTTTTGCTCGTTGGTCCCTCGAATTCTGGAGCTAGTTCGCCCGGGTCCTCGGTTTCGATCGATCCCCTTCAGACGAAGCGGAGGCGGATTTCGCATGAGGTAGCGCAAGCGTCAGCCATGGAGGAGGTCGTCGTCGGCGGCAAGGAGCGCAAGCGCCCGCGCGGCGCGCTCGTCGGCGTCGGCGGCGGGGGCGCGTCGGCGGCGACGGCGGCGGCCTGGCGGACGAGCCGGGTGGCGCGGGCGGCGGCGGGGGGGAAGGACAGGCACAGCAAGGTGGTGACGTCGCGGGGGCTCCGCGACCGCCGGGTGAGGCTGTCGGTGCCGACGGCCATCGCGTTCTACGACATCCAGGACCGCCTCGGCGTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCATCCGCGCCGCCGCGGCCGCCATCGACGCGCTCCCGTCGCTCGACTGCTCCTTAGCCCTCCCCGCCGCCGCCTCCTCGCCGCCGCCGCCGGCCGCCGACGACGCCGAGGTCAGCACATCCGAGACCAGCAAGAGCTCCGTGCTCTCCCTCGCCAACGCCCCCTGCGACAACGGCGGCGGCGCGTTCGCCGAGCTCCTCCACTGCTCGAACACCAACGGCAGCAAGCCATTGCAGCAACAGCAGCAGGCGACGCTTGCGTACTACGCGGCGGCGCAGAGCGCGCACATGGCGG] [+] EMBL AB071808 [TCAGAGAGATTCAGAGTAGCTCAGAGTGAGCTTTTGCTCGTTGGTCCCTCGAATTCTGGAGCTAGTTCGCCCGGGTCCTCGGTTTCGATCGATCCCCTTCAGACGAAGCGGAGGCGGATTTCGCATGAGGTAGCGCAAGCGTCAGCCATGGAGGAGGTCGTCGTCGGCGGCAAGGAGCGCAAGCGCCCGCGCGGCGCGCTCGTCGGCGTCGGCGGCGGGGGCGCGTCGGCGGCGACGGCGGCGGCCTGGCGGACGAGCCGGGTGGCGCGGGCGGCGGCGGGGGGGAAGGACAGGCACAGCAAGGTGGTGACGTCGCGGGGGCTCCGCGACCGCCGGGTGAGGCTGTCGGTGCCGACGGCCATCGCGTTCTACGACATCCAGGACCGCCTCGGCGTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCATCCGCGCCGCCGCGGCCGCCATCGACGCGCTCCCGTCGCTCGACTGCTCCTTAGCCCTCCCCGCCGCCGCCTCCTCGCCGCCGCCGCCGGCCGCCGACGACGCCGAGGTCAGCACATCCGAGACCAGCAAGAGCTCCGTGCTCTCCCTCGCCAACGCCCCCTGCGACAACGGCGGCGGCGCGTTCGCCGAGCTCCTCCACTGCTCGAACACCAACGGCAGCAAGCCATTGCAGCAACAGCAGCAGGCGACGCTTGCGTACTACGCGGCGGCGCAGAGCGCGCACATGGCGG] consensusID : consensus_6679#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CAACCTCAACTTCTCCATGTCCTCGGGTTTCTTGGGTGCCAATAGGGGGACCCTTCAGTCCAATTCGCCGTCGAACATGTCCGGCCACCACCACCACCACCATCAGCAGCAGCTCCAGAGGCTGGACGGCTCCACCATTTCCTTCCTGCTTGGCCACGCCGCCGCGGCGGCGCACCCGGCGGCGTCCGAGGGCCAGATCACCAGCACCGCCGCGTTGCAGCTGTGGGATGGATTCCGCCACTCCGGCATGAAGGAGAAGAGCAAGAACTGATCGATCCCAGCAACGCATCCTCCAAAGGAACTGAAGATATCATCATCAGATTAATTGTTGTCACCTTTCCAGCAAGAGCTCACCGTGGGGAGCTGCTACAAGTTTATTGCGATGACTGCCCGTGTTCTTTTAGCTGGGTCATCGTTCTGCTATGCTGTTTTTTGGCCATCATGAACACCCTGCCGCTGCTGCTACCTGCCATTGCCATCACTCAGACAATCTTGTGAATTTCCTTCTTTTTCCTAGATGAAGCTGCTGTACAAATTTTTGTGGGAGACGTGAGTTTCGAACAAGAATAAGCGTGTCCCGTAGCCAGCGTTAAACCTTTCCCTTCCAGAAATATTTTTCGAGTGAATTGAAATTCATATGTGCAAGGGGTTATTGGAGTGGCATTATTGTGTTCTCTCCTTTAAAGG] [-] EMBL CB683584 [CAACCTCAACTTCTCCATGTCCTCGGGTTTCTTGGGTGCCAATAGGGGGACCCTTCAGTCCAATTCGCCGTCGAACATGTCCGGCCACCACCACCACCACCATCAGCAGCAGCTCCAGAGGCTGGACGGCTCCACCATTTCCTTCCTGCTTGGCCACGCCGCCGCGGCGGCGCACCCGGCGGCGTCCGAGGGCCAGATCACCAGCACCGCCGCGTTGCAGCTGTGGGATGGATTCCGCCACTCCGGCATGAAGGAGAAGAGCAAGAACTGATCGATCCCAGCAACGCATCCTCCAAAGGAACTGAAGATATCATCATCAGATTAATTGTTGTCACCTTTCCAGCAAGAGCTCACCGTGGGGAGCTGCTACAAGTTTATTGCGATGACTGCCCGTGTTCTTTTAGCTGGGTCATCGTTCTGCTATGCTGTTTTTTGGCCATCATGAACACCCTGCCGCTGCTGCTACCTGCCATTGCCATCACTCAGACAATCTTGTGAATTTCCTTCTTTTTCCTAGATGAAGCTGCTGTACAAATTTTTGTGGGAGACGTGAGTTTCGAACAAGAATAAGCGTGTCCCGTAGCCAGCGTTAAACCTTTCCCTTCCAGAAATATTTTTCGAGTGAATTGAAATTCATATGTGCAAGGGGTTATTGGAGTGGCATTATTGTGTTCTCTCCTTTAAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6679#0 AGGGTGAGGGCGACGGGGGGGAAGGACAGGCACAGCAAGGTGTACACGGCGAAGGGAATC 60 consensus_6679#2 ------------------------------------------------------------ consensus_6679#1 ------------------------------------------------------------ consensus_6679#0 CGCGACCGCCGCGTCCGCCTCTCCGTCGCCACCGCCATCCAGTTCTACGACCTCCAGGAC 120 consensus_6679#2 ------------------------------------------------------------ consensus_6679#1 ------------------------------------------------------------ consensus_6679#0 CGCCTCGGCTTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCATCAACGCCGCCTCCCCC 180 consensus_6679#2 ------------------------------------------------------------ consensus_6679#1 ------------------------------------------------------------ consensus_6679#0 GCCATCGACACCCTCCCGTCCCTCGACCCCGCCGCCTTCGCCGCCATTCCCCACGCCGCC 240 consensus_6679#2 ------------------------------------------------------------ consensus_6679#1 ------------------------------------------------------------ consensus_6679#0 GCCGACGCCGCGCCCACGCGGCGGCGTTCGCAGCAGCAGCAGCAGCAGCTCAGCAACAAG 300 consensus_6679#2 ------------------------------------------------------------ consensus_6679#1 ------------------------------------------------------------ consensus_6679#0 TCCGGATGCAGTAGCACGTCGGAGACCAGCAAGGGGTCGGACAAGGAGGTCACCGTGGCG 360 consensus_6679#2 ------------------------------------------------------------ consensus_6679#1 ------------------------------------------------------------ consensus_6679#0 AGCGCCCCGGCGCAGGCCGCGTCGTTCACTGAGCTGCTCATTGCTGGGGTGGCGGCGTCG 420 consensus_6679#2 ------------------------------------------------------------ consensus_6679#1 ------------------------------------------------------------ consensus_6679#0 TCGGCGGGGGGTGGCGCCATTGGCAACGGCGCCGACTGCGTGGGCATCGCGCACCCCGGG 480 consensus_6679#2 ------------------------------------------------------------ consensus_6679#1 ------------------------------------------------------------ consensus_6679#0 AAAGGAGGCGCGGAGGGGGCGTCCACGTACGGCTTCTCCGCCGCCTCGAGCTTCGGCGAC 540 consensus_6679#2 ------------------------------------------------------------ consensus_6679#1 ------------------------------------------------------------ consensus_6679#0 GCGCCACCGATCGGCATGGTGCCGGCGCCGCCGTTCAACTTCTCCGCCCCCGGCGCCGAC 600 consensus_6679#2 ------------------------------------------------------------ consensus_6679#1 ------------------------------------------------------------ consensus_6679#0 ATGGCGGCGCACTACTCGCTCGCCCAGGACCAGCTGGCGGCGCCTCCGCCTCCTGCCGGA 660 consensus_6679#2 ------------------------------------------------------------ consensus_6679#1 -----------------------------------------------TCAGAGAGATTCA 13 consensus_6679#0 GGCGACTACAACCTCAACTTCTCCATGT----CCTCGGGTTTCTTGGGTGCCAATAGGGG 716 consensus_6679#2 --------CAACCTCAACTTCTCCATGT----CCTCGGGTTTCTTGGGTGCCAATAGGGG 48 consensus_6679#1 GAGTAGCTCAGAGTGAGCTTTTGCTCGTTGGTCCCTCGAATTCTGGAGCTAGTTCGCCCG 73 ** * * *** * * ** ** * **** * * * consensus_6679#0 GACCCTTCAGTCCAAT---TCGCCGTCGAACATGTCCGGCCACCACCACCACCACCATCA 773 consensus_6679#2 GACCCTTCAGTCCAAT---TCGCCGTCGAACATGTCCGGCCACCACCACCACCACCATCA 105 consensus_6679#1 GGTCCTCGGTTTCGATCGATCCCCTTCAGACGAAGC-GGAGGCGGATTTCGCATGAGGTA 132 * *** * * ** ** ** ** ** * ** * * * * consensus_6679#0 GCAGCAGCTCCAGAGGCTGGACGGCTCCACCATTTCCTTCCTGCTTGGCCACGCCGCCGC 833 consensus_6679#2 GCAGCAGCTCCAGAGGCTGGACGGCTCCACCATTTCCTTCCTGCTTGGCCACGCCGCCGC 165 consensus_6679#1 GCGCAAGCGTCAGCCA-TGGAGGAGGTCGTCGTCGGCGGCAAGGAGCGCAA-GCGCCCGC 190 ** *** *** **** * * * * * * * ** * ** **** consensus_6679#0 GGCGGCGCACCCGGCGGCGTCCGAGGGCCAGAT-CACCAGCACCGCCGCGTTGCAGC-TG 891 consensus_6679#2 GGCGGCGCACCCGGCGGCGTCCGAGGGCCAGAT-CACCAGCACCGCCGCGTTGCAGC-TG 223 consensus_6679#1 G-CGGCGCGCTCGTCGGCGTCGGCGGCGGGGGCGCGTCGGCGGCGACG-GCGGCGGCCTG 248 * ****** * ** ******* * ** * * * ** ** ** * ** ** ** consensus_6679#0 TGGGATGGATTCCGCCACTCCGGCA----TGAAGGAGAAGAGCAAGAACTGATCGATCCC 947 consensus_6679#2 TGGGATGGATTCCGCCACTCCGGCA----TGAAGGAGAAGAGCAAGAACTGATCGATCCC 279 consensus_6679#1 GCGGACGAGCCGGGTGGCGCGGGCGGCGGCGGGGGGGAAGGACAGGCACAGCAAGGTGGT 308 *** * * * * *** * ** **** ** * ** * * * consensus_6679#0 AGCAACGCATCCTCCAAAGGAACTGAAGATATCATCATCAG-ATTAATTGTTGTCACCTT 1006 consensus_6679#2 AGCAACGCATCCTCCAAAGGAACTGAAGATATCATCATCAG-ATTAATTGTTGTCACCTT 338 consensus_6679#1 GACGTCGCGGGGGCTCCGCGACCGCCGGGTGAGGCTGTCGGTGCCGACGGCCATCGCGTT 368 * *** * ** * * * ** * * * ** * ** consensus_6679#0 --------TCCAGCAAGAGCTCACCGTGGGGAGCTGCTACAAGTTTATTGCGATGACTGC 1058 consensus_6679#2 --------TCCAGCAAGAGCTCACCGTGGGGAGCTGCTACAAGTTTATTGCGATGACTGC 390 consensus_6679#1 CTACGACATCCAGGACCGCCTCGGCGTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCAT 428 ***** * *** *** * **** ** * * * consensus_6679#0 CCGTGTTCTTTTAGCTGGGTCATCGTTCTGCTATGCTGTTTTTTGGCCATCATGAACACC 1118 consensus_6679#2 CCGTGTTCTTTTAGCTGGGTCATCGTTCTGCTATGCTGTTTTTTGGCCATCATGAACACC 450 consensus_6679#1 CCGCGCCGCCGCGGCC--GCCATCGACGCGCTC--CCGTCGCTCGACTGCTCCTTAGCCC 484 *** * ** * ***** *** * ** * * * * ** consensus_6679#0 CTGCCGCTGCTGCTACCT-GCCATTGCCATCACTCA--GACAATCTTGTGAATTTCCTTC 1175 consensus_6679#2 CTGCCGCTGCTGCTACCT-GCCATTGCCATCACTCA--GACAATCTTGTGAATTTCCTTC 507 consensus_6679#1 TCCCCGCCGCCGCCTCCTCGCCGCCGCCGCCGGCCGCCGACGACGCCGAGGTCAGCACAT 544 **** ** ** *** *** *** * * *** * * * * consensus_6679#0 TTTTTCCTAGATGAAGCTGCTGTACAAATTTTTGTGGGAGACGTGAGTTTCGAACAAGAA 1235 consensus_6679#2 TTTTTCCTAGATGAAGCTGCTGTACAAATTTTTGTGGGAGACGTGAGTTTCGAACAAGAA 567 consensus_6679#1 CCGAGACCAGCAAGAGCT-CCGTGCTCTCCCTCGCCAACGCCCCCTGCGACAACGGCGGC 603 * ** **** * ** * * * * * * * * * consensus_6679#0 TAAGCGTGTCCCGTAGCCAGCGTTAAACCTTTCCCTTCCAGAAATATTTTTCGAGTGAAT 1295 consensus_6679#2 TAAGCGTGTCCCGTAGCCAGCGTTAAACCTTTCCCTTCCAGAAATATTTTTCGAGTGAAT 627 consensus_6679#1 GGCGCGTTCGCCG-AGCT--CCTCCACTGCTCGAACACCAACGGCAGCAAGCCATTGCAG 660 **** *** *** * * * * *** * * * ** * consensus_6679#0 TGAAATTCATATGTGCCTCTGGTTATTGGAGTGGCAAAAAAAAAAAAAA----------- 1344 consensus_6679#2 TGAAATTCATATGTGCAAGGGGTTATTGGAGTGGCATTATTGTGTTCTCTCCTTTAAAGG 687 consensus_6679#1 CAACAGCAGCAGGCGACGCTTGCGTACTACGCGGCGGCGCAGAGCGCGCACATGGCGG-- 718 * * * * * * * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||