These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6696#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1383 fasta sequence [ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAGCCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCCTACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCGGAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGGTAATGCTCCTCTTGTTATTGCTAAAGGTGGATTTTCGGGAGTTTTTCCTGATTCCAGTGAATATGCCTTCGCTTTTGCCTCCTCGCTCCACATAAGCTTGTGGTGTGACGTGCAACTGACGAAAGATGGCGTTGGTATTTGCCTCCGAGATTTACTTATGCAGAACTGCACCGATATCACTGAAATTTATCCAGAGGGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTATAACATGGCTTCGCTGAGAAACGTTACTTTTGCCAGCCGGCTAGAGCGACCAAAAATGGATGTTATCCTAGTGCCTTTTGTTTTCTTGGTTCTTTGACACTTTTTAGTTGTATTGAGCATCTGGAATTATTGTCTTGTACTCACTGTCCACCATTGGACAGTAACACAATCAATTTATTCCCGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTGATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGTTTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCATCACCTGAAATAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTAGTGTTCTGCTTTCTTGATAAAGCCCTGTCTGATCCTTCAACAAATAAAACATATAACTATATGTTGAGTAACTTGACATTTATTAAGACAATTGCTTCGGGTAAAATGGTTCCCAAAAACTATATATGGCCAGTAACAAGTGATAATTATATTCAGCTTCACACACAGATTGTCCAAGAAGCTCACAATGCAGGTTTAGAAATATATGCGTCTGATTTTTCAAACGATGGAATTTTTCCCTACAACTACAGTTATGATCCTTTGGGGGAATATCTGTCATTTGTCAGCGACGGTGGCTTTAGTGTTGATGGTGTATTAACAGATTTCCCACTTACTGCATCAGAGGCTATTGGTATGTCGTTGTACTTTGTAGATTTAAATTTAGTTTCCGTACTAGTGTAATTTTATTTGACAGCTGAATACTGTCAATTGTACTGGAGACAAACTCAAAATAAATAATATGCTTCCAAGCTGTACCAAAAA] [+] EMBL CF313654 [ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAGCCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCCTACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCGGAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGGTAATGCTCCTCTTGTTATTGCTAAAGGTGGATTTTCGGGAGTTTTTCCTGATTCCAGTGAATATGCCTTCGCTTTTGCCTCCTCGCTCCACATAAGCTTGTGGTGTGACGTGCAACTGACGAAAGATGGCGTTGGTATTTGCCTCCGAGATTTACTTATGCAGAACTGCACCGATATCACTGAAATTTATCCAGAGGGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTATAACATGGCTTCGCTGAGAAACGTTACTTTTGCCAGCCGGCTAGAGCGACCAAAAATGGATGTTATCCTAGTGCCTTTTGTTTTCTTGGTTCTTTGACACTTTTTAGTTGTATTGAGCATCTGGAATTATTGTCTTGTACTCACTGTCCACCATTGGACAGTAACACAATCA ] [-] EMBL CF313655 [ CACTTTTTAGTTGTATTGAGCATCTGGAATTATTGTCTTGTACTCACTGTCCACCATTGGACAGTAACACAATCAATTTATTCCCGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTGATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGTTTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCATCACCTGAAATAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTAGTGTTCTGCTTTCTTGATAAAGCCCTGTCTGATCCTTCAACAAATAAAACATATAACTATATGTTGAGTAACTTGACATTTATTAAGACAATTGCTTCGGGTAAA ] [-] EMBL CF313787 [ TCGGGAGGCATTAATCGTGAAGTGAATCTAGTGTTCTGCTTTCTTGATAAAGCCCTGTCTGATCCTTCAACAAATAAAACATATAACTATATGTTGAGTAACTTGACATTTATTAAGACAATTGCTTCAGGTATAATGGTTCCCAAAAACTATATATGGCCAGTAACAAGTGATAATTATATTCAGCTTCACACACAGATTGTCCAAGAAGCTCACAATGCAGGTTTAGAAATATATGCGTCTGATTTTTCAAACGATGGAATTTTTCCCTACAACTACAGTTATGATCCTTTGGGGGAATATCTGTCATTTGTCAGCGACGGTGGCTTTAGTGTTGATGGTGTATTAACAGATTTCCCACTTACTGCATCAGAGGCTATTGGTATGTCGTTGTACTTTGTAGATTTAAATTTAGTTTCCGTACTAGTGTAATTTTATTTGACAGCTGAATACTGTCAATTGTACTGGAGACAAACTCAAAATAAATAATATGCTTCCAAGCTGTACCAAAAA] consensusID : consensus_6696#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAGCCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCCTACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCGGAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGAGGGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTATAACATGGCTTCGCTGAGAAACGTTACTTTAACACAATCAATTTATTCCCGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTGATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGTTTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCATCACCTGAACTAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTAGTGTTCTGCTTTCTTGAAAAGCCCTGTCTGATCCTTCACAAATAAACATATACTATATGTTGAGTAACTTG] [+] EMBL CF313786 [ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAGCCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCCTACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCGGAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGAGGGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTATAACATGGCTTCGCTGAGAAACGTTACTTTAACACAATCAATTTATTCCCGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTGATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGTTTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCATCACCTGAACTAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTAGTGTTCTGCTTTCTTGAAAAGCCCTGTCTGATCCTTCACAAATAAACATATACTATATGTTGAGTAACTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6696#0 ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAG 60 consensus_6696#1 ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAG 60 ************************************************************ consensus_6696#0 CCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCC 120 consensus_6696#1 CCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCC 120 ************************************************************ consensus_6696#0 TACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCG 180 consensus_6696#1 TACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCG 180 ************************************************************ consensus_6696#0 GAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGGTAATGCTCCTCTTGTT 240 consensus_6696#1 GAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACG----------------- 223 ******************************************* consensus_6696#0 ATTGCTAAAGGTGGATTTTCGGGAGTTTTTCCTGATTCCAGTGAATATGCCTTCGCTTTT 300 consensus_6696#1 ------------------------------------------------------------ consensus_6696#0 GCCTCCTCGCTCCACATAAGCTTGTGGTGTGACGTGCAACTGACGAAAGATGGCGTTGGT 360 consensus_6696#1 ------------------------------------------------------------ consensus_6696#0 ATTTGCCTCCGAGATTTACTTATGCAGAACTGCACCGATATCACTGAAATTTATCCAGAG 420 consensus_6696#1 ----------------------------------------------------------AG 225 ** consensus_6696#0 GGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTAT 480 consensus_6696#1 GGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTAT 285 ************************************************************ consensus_6696#0 AACATGGCTTCGCTGAGAAACGTTACTTTTGCCAGCCGGCTAGAGCGACCAAAAATGGAT 540 consensus_6696#1 AACATGGCTTCGCTGAGAAACGTTACTTT------------------------------- 314 ***************************** consensus_6696#0 GTTATCCTAGTGCCTTTTGTTTTCTTGGTTCTTTGACACTTTTTAGTTGTATTGAGCATC 600 consensus_6696#1 ------------------------------------------------------------ consensus_6696#0 TGGAATTATTGTCTTGTACTCACTGTCCACCATTGGACAGTAACACAATCAATTTATTCC 660 consensus_6696#1 -----------------------------------------AACACAATCAATTTATTCC 333 ******************* consensus_6696#0 CGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTG 720 consensus_6696#1 CGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTG 393 ************************************************************ consensus_6696#0 ATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGT 780 consensus_6696#1 ATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGT 453 ************************************************************ consensus_6696#0 TTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCA 840 consensus_6696#1 TTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCA 513 ************************************************************ consensus_6696#0 TCACCTGAAATAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTA 900 consensus_6696#1 TCACCTGAACTAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTA 573 ********* ************************************************** consensus_6696#0 GTGTTCTGCTTTCTTGATAAAGCCCTGTCTGATCCTTCAACAAATAAAACATATAACTAT 960 consensus_6696#1 GTGTTCTGCTTTCTTGA-AAAGCCCTGTCTGATCCTTCA-CAAATAAA-CATATA-CTAT 629 ***************** ********************* ******** ****** **** consensus_6696#0 ATGTTGAGTAACTTGACATTTATTAAGACAATTGCTTCGGGTAAAATGGTTCCCAAAAAC 1020 consensus_6696#1 ATGTTGAGTAACTTG--------------------------------------------- 644 *************** consensus_6696#0 TATATATGGCCAGTAACAAGTGATAATTATATTCAGCTTCACACACAGATTGTCCAAGAA 1080 consensus_6696#1 ------------------------------------------------------------ consensus_6696#0 GCTCACAATGCAGGTTTAGAAATATATGCGTCTGATTTTTCAAACGATGGAATTTTTCCC 1140 consensus_6696#1 ------------------------------------------------------------ consensus_6696#0 TACAACTACAGTTATGATCCTTTGGGGGAATATCTGTCATTTGTCAGCGACGGTGGCTTT 1200 consensus_6696#1 ------------------------------------------------------------ consensus_6696#0 AGTGTTGATGGTGTATTAACAGATTTCCCACTTACTGCATCAGAGGCTATTGGTATGTCG 1260 consensus_6696#1 ------------------------------------------------------------ consensus_6696#0 TTGTACTTTGTAGATTTAAATTTAGTTTCCGTACTAGTGTAATTTTATTTGACAGCTGAA 1320 consensus_6696#1 ------------------------------------------------------------ consensus_6696#0 TACTGTCAATTGTACTGGAGACAAACTCAAAATAAATAATATGCTTCCAAGCTGTACCAA 1380 consensus_6696#1 ------------------------------------------------------------ consensus_6696#0 AAA 1383 consensus_6696#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||