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Oryza sativa
cluster # 6696 cluster # 6696       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6696#0 length = 1383 sequences # 3  
consensus_6696#1 length = 644 sequences # 1  

consensusID : consensus_6696#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1383
fasta sequence
                              [ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAGCCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCCTACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCGGAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGGTAATGCTCCTCTTGTTATTGCTAAAGGTGGATTTTCGGGAGTTTTTCCTGATTCCAGTGAATATGCCTTCGCTTTTGCCTCCTCGCTCCACATAAGCTTGTGGTGTGACGTGCAACTGACGAAAGATGGCGTTGGTATTTGCCTCCGAGATTTACTTATGCAGAACTGCACCGATATCACTGAAATTTATCCAGAGGGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTATAACATGGCTTCGCTGAGAAACGTTACTTTTGCCAGCCGGCTAGAGCGACCAAAAATGGATGTTATCCTAGTGCCTTTTGTTTTCTTGGTTCTTTGACACTTTTTAGTTGTATTGAGCATCTGGAATTATTGTCTTGTACTCACTGTCCACCATTGGACAGTAACACAATCAATTTATTCCCGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTGATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGTTTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCATCACCTGAAATAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTAGTGTTCTGCTTTCTTGATAAAGCCCTGTCTGATCCTTCAACAAATAAAACATATAACTATATGTTGAGTAACTTGACATTTATTAAGACAATTGCTTCGGGTAAAATGGTTCCCAAAAACTATATATGGCCAGTAACAAGTGATAATTATATTCAGCTTCACACACAGATTGTCCAAGAAGCTCACAATGCAGGTTTAGAAATATATGCGTCTGATTTTTCAAACGATGGAATTTTTCCCTACAACTACAGTTATGATCCTTTGGGGGAATATCTGTCATTTGTCAGCGACGGTGGCTTTAGTGTTGATGGTGTATTAACAGATTTCCCACTTACTGCATCAGAGGCTATTGGTATGTCGTTGTACTTTGTAGATTTAAATTTAGTTTCCGTACTAGTGTAATTTTATTTGACAGCTGAATACTGTCAATTGTACTGGAGACAAACTCAAAATAAATAATATGCTTCCAAGCTGTACCAAAAA]

[+] EMBL CF313654             [ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAGCCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCCTACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCGGAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGGTAATGCTCCTCTTGTTATTGCTAAAGGTGGATTTTCGGGAGTTTTTCCTGATTCCAGTGAATATGCCTTCGCTTTTGCCTCCTCGCTCCACATAAGCTTGTGGTGTGACGTGCAACTGACGAAAGATGGCGTTGGTATTTGCCTCCGAGATTTACTTATGCAGAACTGCACCGATATCACTGAAATTTATCCAGAGGGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTATAACATGGCTTCGCTGAGAAACGTTACTTTTGCCAGCCGGCTAGAGCGACCAAAAATGGATGTTATCCTAGTGCCTTTTGTTTTCTTGGTTCTTTGACACTTTTTAGTTGTATTGAGCATCTGGAATTATTGTCTTGTACTCACTGTCCACCATTGGACAGTAACACAATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CF313655             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CACTTTTTAGTTGTATTGAGCATCTGGAATTATTGTCTTGTACTCACTGTCCACCATTGGACAGTAACACAATCAATTTATTCCCGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTGATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGTTTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCATCACCTGAAATAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTAGTGTTCTGCTTTCTTGATAAAGCCCTGTCTGATCCTTCAACAAATAAAACATATAACTATATGTTGAGTAACTTGACATTTATTAAGACAATTGCTTCGGGTAAA                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CF313787             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCGGGAGGCATTAATCGTGAAGTGAATCTAGTGTTCTGCTTTCTTGATAAAGCCCTGTCTGATCCTTCAACAAATAAAACATATAACTATATGTTGAGTAACTTGACATTTATTAAGACAATTGCTTCAGGTATAATGGTTCCCAAAAACTATATATGGCCAGTAACAAGTGATAATTATATTCAGCTTCACACACAGATTGTCCAAGAAGCTCACAATGCAGGTTTAGAAATATATGCGTCTGATTTTTCAAACGATGGAATTTTTCCCTACAACTACAGTTATGATCCTTTGGGGGAATATCTGTCATTTGTCAGCGACGGTGGCTTTAGTGTTGATGGTGTATTAACAGATTTCCCACTTACTGCATCAGAGGCTATTGGTATGTCGTTGTACTTTGTAGATTTAAATTTAGTTTCCGTACTAGTGTAATTTTATTTGACAGCTGAATACTGTCAATTGTACTGGAGACAAACTCAAAATAAATAATATGCTTCCAAGCTGTACCAAAAA]


>consensus_6696#0 ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAG CCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCC TACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCG GAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGGTAATGCTCCTCTTGTT ATTGCTAAAGGTGGATTTTCGGGAGTTTTTCCTGATTCCAGTGAATATGCCTTCGCTTTT GCCTCCTCGCTCCACATAAGCTTGTGGTGTGACGTGCAACTGACGAAAGATGGCGTTGGT ATTTGCCTCCGAGATTTACTTATGCAGAACTGCACCGATATCACTGAAATTTATCCAGAG GGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTAT AACATGGCTTCGCTGAGAAACGTTACTTTTGCCAGCCGGCTAGAGCGACCAAAAATGGAT GTTATCCTAGTGCCTTTTGTTTTCTTGGTTCTTTGACACTTTTTAGTTGTATTGAGCATC TGGAATTATTGTCTTGTACTCACTGTCCACCATTGGACAGTAACACAATCAATTTATTCC CGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTG ATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGT TTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCA TCACCTGAAATAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTA GTGTTCTGCTTTCTTGATAAAGCCCTGTCTGATCCTTCAACAAATAAAACATATAACTAT ATGTTGAGTAACTTGACATTTATTAAGACAATTGCTTCGGGTAAAATGGTTCCCAAAAAC TATATATGGCCAGTAACAAGTGATAATTATATTCAGCTTCACACACAGATTGTCCAAGAA GCTCACAATGCAGGTTTAGAAATATATGCGTCTGATTTTTCAAACGATGGAATTTTTCCC TACAACTACAGTTATGATCCTTTGGGGGAATATCTGTCATTTGTCAGCGACGGTGGCTTT AGTGTTGATGGTGTATTAACAGATTTCCCACTTACTGCATCAGAGGCTATTGGTATGTCG TTGTACTTTGTAGATTTAAATTTAGTTTCCGTACTAGTGTAATTTTATTTGACAGCTGAA TACTGTCAATTGTACTGGAGACAAACTCAAAATAAATAATATGCTTCCAAGCTGTACCAA AAA



consensusID : consensus_6696#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence
                              [ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAGCCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCCTACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCGGAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGAGGGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTATAACATGGCTTCGCTGAGAAACGTTACTTTAACACAATCAATTTATTCCCGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTGATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGTTTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCATCACCTGAACTAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTAGTGTTCTGCTTTCTTGAAAAGCCCTGTCTGATCCTTCACAAATAAACATATACTATATGTTGAGTAACTTG]

[+] EMBL CF313786             [ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAGCCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCCTACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCGGAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGAGGGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTATAACATGGCTTCGCTGAGAAACGTTACTTTAACACAATCAATTTATTCCCGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTGATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGTTTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCATCACCTGAACTAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTAGTGTTCTGCTTTCTTGAAAAGCCCTGTCTGATCCTTCACAAATAAACATATACTATATGTTGAGTAACTTG]


>consensus_6696#1 ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAG CCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCC TACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCG GAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGAGGGGATGAAGGCATAT CTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTATAACATGGCTTCGCTG AGAAACGTTACTTTAACACAATCAATTTATTCCCGTACCCCGAGGTTCGACTCCAACTTC GACATCCTTTCTGTCACCGGCTTCATATCCTTGATCAAACCATCTTCTACTTGGTTGAAT GTCGAGCATGACATTTTCTACAGAGAGCATGGTTTGAACATGACAAATTACATTCTTTCA ATACAGAAGCTTGGCTCTGTGAAGTACATCTCATCACCTGAACTAGGTTTCCTGCAAAGT TTATCGGGAGGCATTAATCGTGAAGTGAATCTAGTGTTCTGCTTTCTTGAAAAGCCCTGT CTGATCCTTCACAAATAAACATATACTATATGTTGAGTAACTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6696#0      ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAG 60
consensus_6696#1      ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAG 60
                      ************************************************************

consensus_6696#0      CCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCC 120
consensus_6696#1      CCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCC 120
                      ************************************************************

consensus_6696#0      TACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCG 180
consensus_6696#1      TACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCG 180
                      ************************************************************

consensus_6696#0      GAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGGTAATGCTCCTCTTGTT 240
consensus_6696#1      GAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACG----------------- 223
                      *******************************************                 

consensus_6696#0      ATTGCTAAAGGTGGATTTTCGGGAGTTTTTCCTGATTCCAGTGAATATGCCTTCGCTTTT 300
consensus_6696#1      ------------------------------------------------------------
                                                                                  

consensus_6696#0      GCCTCCTCGCTCCACATAAGCTTGTGGTGTGACGTGCAACTGACGAAAGATGGCGTTGGT 360
consensus_6696#1      ------------------------------------------------------------
                                                                                  

consensus_6696#0      ATTTGCCTCCGAGATTTACTTATGCAGAACTGCACCGATATCACTGAAATTTATCCAGAG 420
consensus_6696#1      ----------------------------------------------------------AG 225
                                                                                **

consensus_6696#0      GGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTAT 480
consensus_6696#1      GGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTAT 285
                      ************************************************************

consensus_6696#0      AACATGGCTTCGCTGAGAAACGTTACTTTTGCCAGCCGGCTAGAGCGACCAAAAATGGAT 540
consensus_6696#1      AACATGGCTTCGCTGAGAAACGTTACTTT------------------------------- 314
                      *****************************                               

consensus_6696#0      GTTATCCTAGTGCCTTTTGTTTTCTTGGTTCTTTGACACTTTTTAGTTGTATTGAGCATC 600
consensus_6696#1      ------------------------------------------------------------
                                                                                  

consensus_6696#0      TGGAATTATTGTCTTGTACTCACTGTCCACCATTGGACAGTAACACAATCAATTTATTCC 660
consensus_6696#1      -----------------------------------------AACACAATCAATTTATTCC 333
                                                               *******************

consensus_6696#0      CGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTG 720
consensus_6696#1      CGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTG 393
                      ************************************************************

consensus_6696#0      ATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGT 780
consensus_6696#1      ATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGT 453
                      ************************************************************

consensus_6696#0      TTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCA 840
consensus_6696#1      TTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCA 513
                      ************************************************************

consensus_6696#0      TCACCTGAAATAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTA 900
consensus_6696#1      TCACCTGAACTAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTA 573
                      ********* **************************************************

consensus_6696#0      GTGTTCTGCTTTCTTGATAAAGCCCTGTCTGATCCTTCAACAAATAAAACATATAACTAT 960
consensus_6696#1      GTGTTCTGCTTTCTTGA-AAAGCCCTGTCTGATCCTTCA-CAAATAAA-CATATA-CTAT 629
                      ***************** ********************* ******** ****** ****

consensus_6696#0      ATGTTGAGTAACTTGACATTTATTAAGACAATTGCTTCGGGTAAAATGGTTCCCAAAAAC 1020
consensus_6696#1      ATGTTGAGTAACTTG--------------------------------------------- 644
                      ***************                                             

consensus_6696#0      TATATATGGCCAGTAACAAGTGATAATTATATTCAGCTTCACACACAGATTGTCCAAGAA 1080
consensus_6696#1      ------------------------------------------------------------
                                                                                  

consensus_6696#0      GCTCACAATGCAGGTTTAGAAATATATGCGTCTGATTTTTCAAACGATGGAATTTTTCCC 1140
consensus_6696#1      ------------------------------------------------------------
                                                                                  

consensus_6696#0      TACAACTACAGTTATGATCCTTTGGGGGAATATCTGTCATTTGTCAGCGACGGTGGCTTT 1200
consensus_6696#1      ------------------------------------------------------------
                                                                                  

consensus_6696#0      AGTGTTGATGGTGTATTAACAGATTTCCCACTTACTGCATCAGAGGCTATTGGTATGTCG 1260
consensus_6696#1      ------------------------------------------------------------
                                                                                  

consensus_6696#0      TTGTACTTTGTAGATTTAAATTTAGTTTCCGTACTAGTGTAATTTTATTTGACAGCTGAA 1320
consensus_6696#1      ------------------------------------------------------------
                                                                                  

consensus_6696#0      TACTGTCAATTGTACTGGAGACAAACTCAAAATAAATAATATGCTTCCAAGCTGTACCAA 1380
consensus_6696#1      ------------------------------------------------------------
                                                                                  

consensus_6696#0      AAA 1383
consensus_6696#1      ---
                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)