These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1810 fasta sequence [CCACAAACGCACGCCCGCACGCGCGCGCGCGCGCTCAGAGACCTCCGTCGCCGCCCGCCGCACGCCGGCGACCCACCGCGCCGCACGATGCCGCCGACCTCAGTGAGCCCACCAAGAACAGCGCCGGGGCCGGCGAACCCGAGCCCGGCACACCCGTCCCGCGTGCGGGTGATCCACCCGGGCGGCGGGAAGCCCGGTGGGCCGGTGGTGTACTGGATGCTGCGGGACCAGCGGCTCGCCGACAACTGGGCGCTCCTCCACGCCGCCGGCCTCGCCGCCGCCTCCGCGTCCCCGCTCGCCGTCGCGTTCGCGCTGTTCCCGAGGCCCTTCCTCCTCTCCGCCCGCCGCCGCCAGCTCGGGTTCCTCCTCCGCGGCCTCCGCCGCCTCGCCGCCGACGCCGCCGCCCGCCACCTCCCCTTCTTCCTCTTCACCGGTGGGCCCGCGGAGATCCCGGCGCTGGTGCGGCGCCTTGGTGCGTCGACGCTGGTCGCCGACTTCTCGCCGCTGCGGCCGGTGAGGGAGGCGCTCGACGCGGTGGTCGGCGACCTGCGGCGGGAGGCGCCCGGCGTGGCCGTGCACCAGGTGGACGCGCACAACGTGGTGCCTGTGTGGACGGCGTCGGCGAAGATGGAGTATTCAGCCAAGACCTTCAGAGGCAAGGTGAGCAAGGTGATGGATGAGTACCTTGTGGAGTTCCCTGAATTGCCGGCGGTGGTGCCATGGGACAGGGAGCAGCCGGAGGGGGTCGACTGGGACGCACTCATCGCCAGGGTTTGCAGTGAGGCGGAGAATGTGCCGGAGATTGACTGGTGTGAGCCTGGAGAGGAAGCAGCCATAGAGGCGCTTCTCGGCAGCAAGGATGGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGACCGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGGCACATTTCGGCACAGCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAGTCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGCTATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTGATGGATCATGCTGCTGATAAAAGAGAGCATATCTATACGTGAGAGGGAACAGCTTGAGAATGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAAAAATGCATGGATTCATGAGAATGTACTGGGCCAAAAAGATTCTAGAATGGACTAGTGGACCAGAAGAAGCACTTTCAACTGCAATTTATTTAAATGACAAGTATGAGATAGATGGCAGGGACCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAAGGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATTCGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCAAGAAGAGGAACGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAGTCTCAGCACTAAATCCGACTAGGAAAATATGAACATTTCTTTGTGTGGTATACCACGAGCTCGGAAAATTGAAGAACAGTGCTAACTTGAGGTAGATCATGTAGGGTATACACTGTAGATCTGTTTGTCTGATATCCTTGTAGGCTTCTAATCATTCAAAATTTGCTAGCATTGTTAAGACTTTAAGACATACAGTGTCACACCAGTTGA] [+] EMBL AK111418 [CCACAAACGCACGCCCGCACGCGCGCGCGCGCGCTCAGAGACCTCCGTCGCCGCCCGCCGCACGCCGGCGACCCACCGCGCCGCACGATGCCGCCGACCTCAGTGAGCCCACCAAGAACAGCGCCGGGGCCGGCGAACCCGAGCCCGGCACACCCGTCCCGCGTGCGGGTGATCCACCCGGGCGGCGGGAAGCCCGGTGGGCCGGTGGTGTACTGGATGCTGCGGGACCAGCGGCTCGCCGACAACTGGGCGCTCCTCCACGCCGCCGGCCTCGCCGCCGCCTCCGCGTCCCCGCTCGCCGTCGCGTTCGCGCTGTTCCCGAGGCCCTTCCTCCTCTCCGCCCGCCGCCGCCAGCTCGGGTTCCTCCTCCGCGGCCTCCGCCGCCTCGCCGCCGACGCCGCCGCCCGCCACCTCCCCTTCTTCCTCTTCACCGGTGGGCCCGCGGAGATCCCGGCGCTGGTGCGGCGCCTTGGTGCGTCGACGCTGGTCGCCGACTTCTCGCCGCTGCGGCCGGTGAGGGAGGCGCTCGACGCGGTGGTCGGCGACCTGCGGCGGGAGGCGCCCGGCGTGGCCGTGCACCAGGTGGACGCGCACAACGTGGTGCCTGTGTGGACGGCGTCGGCGAAGATGGAGTATTCAGCCAAGACCTTCAGAGGCAAGGTGAGCAAGGTGATGGATGAGTACCTTGTGGAGTTCCCTGAATTGCCGGCGGTGGTGCCATGGGACAGGGAGCAGCCGGAGGGGGTCGACTGGGACGCACTCATCGCCAGGGTTTGCAGTGAGGCGGAGAATGTGCCGGAGATTGACTGGTGTGAGCCTGGAGAGGAAGCAGCCATAGAGGCGCTTCTCGGCAGCAAGGATGGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGACCGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGGCACATTTCGGCACAGCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAGTCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGCTATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTGATGGATCATGCTGCTGATAAAAGAGAGCATATCTATACGTGAGAGGGAACAGCTTGAGAATGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAAAAATGCATGGATTCATGAGAATGTACTGGGCCAAAAAGATTCTAGAATGGACTAGTGGACCAGAAGAAGCACTTTCAACTGCAATTTATTTAAATGACAAGTATGAGATAGATGGCAGGGACCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAAGGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATTCGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCAAGAAGAGGAACGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAGTCTCAGCACTAAATCCGACTAGGAAAATATGAACATTTCTTTGTGTGGTATACCACGAGCTCGGAAAATTGAAGAACAGTGCTAACTTGAGGTAGATCATGTAGGGTATACACTGTAGATCTGTTTGTCTGATATCCTTGTAGGCTTCTAATCATTCAAAATTTGCTAGCATTGTTAAGACTTTAAGACATACAGTGTCACACCAGTTGA] [+] EMBL AB096003 [ ACCTCAGTGAGCCCACCAAGAACAGCGCCGGGGCCGGCGAACCCGAGCCCGGCACACCCGTCCCGCGTGCGGGTGATCCACCCGGGCGGCGGGAAGCCCGGTGGGCCGGTGGTGTACTGGATGCTGCGGGACCAGCGGCTCGCCGACAACTGGGCGCTCCTCCACGCCGCCGGCCTCGCCGCCGCCTCCGCGTCCCCGCTCGCCGTCGCGTTCGCGCTGTTCCCGAGGCCCTTCCTCCTCTCCGCCCGCCGCCGCCAGCTCGGGTTCCTCCTCCGCGGCCTCCGCCGCCTCGCCGCCGACGCCGCCGCCCGCCACCTCCCCTTCTTCCTCTTCACCGGTGGGCCCGCGGAGATCCCGGCGCTGGTGCAGCGCCTTGGTGCGTCGACGCTGGTCGCCGACTTCTCGCCGCTGCGGCCGGTGAGGGAGGCGCTCGACGCGGTGGTCGGCGACCTGCGGCGGGAGGCGCCCGGTGTGGCCGTGCACCAGGTGGACGCGCACAACGTGGTGCCTGTGTGGACGGCGTCGGCGAAGATGGAGTATTCAGCCAAGACCTTCAGAGGCAAGGTGAGCAAGGTGATGGATGAGTACCTTGTGGAGTTCCCTGAATTGCCGGCGGTGGTGCCATGGGACAGGGAGCAGCCGGAGGGGGTCGACTGGGACGCACTCATCGCCAGGGTTTGCAGTGAGGCGGAGAATGTGCCGGAGATTGACTGGTGTGAGCCTGGAGAGGAAGCAGCCATAGAGGCGCTTCTCGGCAGCAAGGATGGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGACCGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGGCACATTTCGGCACAGCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAGTCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGCTATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTGATGGATCATGCTGCTGATAAAAGAGAGCATATCTATAC GAGGGAACAGCTTGAGAATGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAGAAATGCATGGATTCATGAGAATGTACTGGGCCAAAAAGATTCTAGAATGGACTAGTGGACCAGAAGAAGCACTTTCAACTGCAATTTATTTAAATGACAAGTATGAGATAGATGGCAGGGACCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAAGGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATTCGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCAAGAAGAGGAACGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAGTC ] consensusID : consensus_6711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 699 fasta sequence [GCAGCCATAGAGGCGCTTCTCGGCAGCAAGGACTGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGACCGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGGCACATTTCGGCACAGCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAGTCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGCTATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTGATGGATCATGCTGCTGATAAAAGAGAGCATATCTATACGTGAGAGGGAACAGCTTGAGAATGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAAAAATGCATGGATTCATGAGTATGAGATAGATGGCAGGGACCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAAGGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATTCGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCCAGAAGAGGAACGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAGTCTCAGCAC] [+] EMBL CB000465 [GCAGCCATAGAGGCGCTTCTCGGCAGCAAGGACTGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGACCGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGGCACATTTCGGCACAGCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAGTCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGCTATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTGATGGATCATGCTGCTGATAAAAGAGAGCATATCTATACGTGAGAGGGAACAGCTTGAGAATGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAAAAATGCATGGATTCATGAGTATGAGATAGATGGCAGGGACCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAAGGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATTCGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCCAG ] [+] EMBL CA999324 [ AGCCATAGAGGCGCTTCTCGGCAGCAAGGATGGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGACCGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGGCACATTTCGGCACAGCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAGTCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGCTATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTGATGGATCATGCTGCTGATAAAAGAGAGCATATCTATACGTGAGAGGGAACAGCTTGAGAATGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAAAAATGCATGGATTCATGAGTATGAGATAGATGGCAGGGACCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAAGGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATTCGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCAAGAAGAGGAACGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAGTCTCAGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6711#0 CCACAAACGCACGCCCGCACGCGCGCGCGCGCGCTCAGAGACCTCCGTCGCCGCCCGCCG 60 consensus_6711#1 ------------------------------------------------------------ consensus_6711#0 CACGCCGGCGACCCACCGCGCCGCACGATGCCGCCGACCTCAGTGAGCCCACCAAGAACA 120 consensus_6711#1 ------------------------------------------------------------ consensus_6711#0 GCGCCGGGGCCGGCGAACCCGAGCCCGGCACACCCGTCCCGCGTGCGGGTGATCCACCCG 180 consensus_6711#1 ------------------------------------------------------------ consensus_6711#0 GGCGGCGGGAAGCCCGGTGGGCCGGTGGTGTACTGGATGCTGCGGGACCAGCGGCTCGCC 240 consensus_6711#1 ------------------------------------------------------------ consensus_6711#0 GACAACTGGGCGCTCCTCCACGCCGCCGGCCTCGCCGCCGCCTCCGCGTCCCCGCTCGCC 300 consensus_6711#1 ------------------------------------------------------------ consensus_6711#0 GTCGCGTTCGCGCTGTTCCCGAGGCCCTTCCTCCTCTCCGCCCGCCGCCGCCAGCTCGGG 360 consensus_6711#1 ------------------------------------------------------------ consensus_6711#0 TTCCTCCTCCGCGGCCTCCGCCGCCTCGCCGCCGACGCCGCCGCCCGCCACCTCCCCTTC 420 consensus_6711#1 ------------------------------------------------------------ consensus_6711#0 TTCCTCTTCACCGGTGGGCCCGCGGAGATCCCGGCGCTGGTGCGGCGCCTTGGTGCGTCG 480 consensus_6711#1 ------------------------------------------------------------ consensus_6711#0 ACGCTGGTCGCCGACTTCTCGCCGCTGCGGCCGGTGAGGGAGGCGCTCGACGCGGTGGTC 540 consensus_6711#1 ------------------------------------------------------------ consensus_6711#0 GGCGACCTGCGGCGGGAGGCGCCCGGCGTGGCCGTGCACCAGGTGGACGCGCACAACGTG 600 consensus_6711#1 ------------------------------------------------------------ consensus_6711#0 GTGCCTGTGTGGACGGCGTCGGCGAAGATGGAGTATTCAGCCAAGACCTTCAGAGGCAAG 660 consensus_6711#1 ------------------------------------------------------------ consensus_6711#0 GTGAGCAAGGTGATGGATGAGTACCTTGTGGAGTTCCCTGAATTGCCGGCGGTGGTGCCA 720 consensus_6711#1 ------------------------------------------------------------ consensus_6711#0 TGGGACAGGGAGCAGCCGGAGGGGGTCGACTGGGACGCACTCATCGCCAGGGTTTGCAGT 780 consensus_6711#1 ------------------------------------------------------------ consensus_6711#0 GAGGCGGAGAATGTGCCGGAGATTGACTGGTGTGAGCCTGGAGAGGAAGCAGCCATAGAG 840 consensus_6711#1 ------------------------------------------------GCAGCCATAGAG 12 ************ consensus_6711#0 GCGCTTCTCGGCAGCAAGGATGGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGAC 900 consensus_6711#1 GCGCTTCTCGGCAGCAAGGACTGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGAC 72 ******************** ************************************** consensus_6711#0 CGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGG 960 consensus_6711#1 CGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGG 132 ************************************************************ consensus_6711#0 CACATTTCGGCACAGCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAG 1020 consensus_6711#1 CACATTTCGGCACAGCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAG 192 ************************************************************ consensus_6711#0 TCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGC 1080 consensus_6711#1 TCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGC 252 ************************************************************ consensus_6711#0 TATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTG 1140 consensus_6711#1 TATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTG 312 ************************************************************ consensus_6711#0 ATGGATCATGCTGCTGATAAAAGAGAGCATATCTATACGTGAGAGGGAACAGCTTGAGAA 1200 consensus_6711#1 ATGGATCATGCTGCTGATAAAAGAGAGCATATCTATACGTGAGAGGGAACAGCTTGAGAA 372 ************************************************************ consensus_6711#0 TGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAAA 1260 consensus_6711#1 TGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAAA 432 ************************************************************ consensus_6711#0 AATGCATGGATTCATGAGAATGTACTGGGCCAAAAAGATTCTAGAATGGACTAGTGGACC 1320 consensus_6711#1 AATGCATGGATTCATGAG------------------------------------------ 450 ****************** consensus_6711#0 AGAAGAAGCACTTTCAACTGCAATTTATTTAAATGACAAGTATGAGATAGATGGCAGGGA 1380 consensus_6711#1 ----------------------------------------TATGAGATAGATGGCAGGGA 470 ******************** consensus_6711#0 CCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAA 1440 consensus_6711#1 CCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAA 530 ************************************************************ consensus_6711#0 GGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATT 1500 consensus_6711#1 GGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATT 590 ************************************************************ consensus_6711#0 CGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCAAGAAGAGGAA 1560 consensus_6711#1 CGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCCAGAAGAGGAA 650 ************************************************* ********** consensus_6711#0 CGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAGTCTCAGCACTAAATCCGACT 1620 consensus_6711#1 CGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAGTCTCAGCAC----------- 699 ************************************************* consensus_6711#0 AGGAAAATATGAACATTTCTTTGTGTGGTATACCACGAGCTCGGAAAATTGAAGAACAGT 1680 consensus_6711#1 ------------------------------------------------------------ consensus_6711#0 GCTAACTTGAGGTAGATCATGTAGGGTATACACTGTAGATCTGTTTGTCTGATATCCTTG 1740 consensus_6711#1 ------------------------------------------------------------ consensus_6711#0 TAGGCTTCTAATCATTCAAAATTTGCTAGCATTGTTAAGACTTTAAGACATACAGTGTCA 1800 consensus_6711#1 ------------------------------------------------------------ consensus_6711#0 CACCAGTTGA 1810 consensus_6711#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||