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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 730 fasta sequence
[CCTTTTTTTTTAGTATCTGAACGATCTTTGATTCTTTATCCTGAAGCTAATGCTTTGGCTCCCATGTGAATACTAGCAGTATGCTAGTAGTACGATGATGATGATGATGAAACAAAGGAAATGGAGCTCTCTAAACATGCCAGTACTATGATTATCAAAAGCCTAAAAAAAGGCCCCATTTTTATGTACAGATGTCTTTCAAAGTAGCAAAATTCGATCGAGTTTGCGTTTCTAGTGATGTTTGGTTGGGAATTCATCAGAAGCTTGTGCTCAGAATGTTGAGCAGTGAGACTCTGGTGTTCACCAGAGCGCGGAACACCTTCTCGCCGATGCTCTCCACGTCCGCGATGCACCGTCCCAGGTTGTCCAGGCGCTCGAACGCCGCCTTCCGTTCTCTCTCGTCCGGGTCCACGGCGACGTTGGGTTGGGGCCGCGCCGTGGCGGCGGAGGAGGTGGAGGAGGAGGAGGCGTCACTGTCGGCGTGCTGCTTACTGGCTGACCGGCGCTTCGCCCGCGACATCCAGCGCATCAGGTCGGCGACCCACCATATGCGCAGCGACGATGGCTTGGTGGTGATGATGTGGTGTCTTGGCGTCGCCGATGGTGTGGTGAATCTCGCCGGGGAGGGCATCCAGCAGGGCGTGGCGGCGACCTCGACACGGGCCGTGGCGGCGGCGATGGAGAGGGACCACACGCCGGAGAAGACCGCGGCCGAGGCCGAGGCGACCGC]
[+] EMBL CB669495 [CCTTTTTTTTTAGTATCTGAACGATCTTTGATTCTTTATCCTGAAGCTAATGCTTTGGCTCCCATGTGAATACTAGCAGTATGCTAGTAGTACGATGATGATGATGATGAAACAAAGGAAATGGAGCTCTCTAAACATGCCAGTACTATGATTATCAAAAGCCTAAAAAAAGGCCCCATTTTTATGTACAGATGTCTTTCAAAGTAGCAAAATTCGATCGAGTTTGCGTTTCTAGTGATGTTTGGTTGGGAATTCATCAGAAGCTTGTGCTCAGAATGTTGAGCAGTGAGACTCTGGTGTTCACCAGAGCGCGGAACACCTTCTCGCCGATGCTCTCCACGTCCGCGATGCACCGTCCCAGGTTGTCCAGGCGCTCGAACGCCGCCTTCCGTTCTCTCTCGTCCGGGTCCACGGCGACGTTGGGTTGGGGCCGCGCCGTGGCGGCGGAGGAGGTGGAGGAGGAGGAGGCGTCACTGTCGGCGTGCTGCTTACTGGCTGACCGGCGCTTCGCCCGCGACATCCAGCGCATCAGGTCGGCGACCCACCATATGCGCAGCGACGATGGCTTGGTGGTGATGATGTGGTGTCTTGGCGTCGCCGATGGTGTGGTGAATCTCGCCGGGGAGGGCATCCAGCAGGGCGTGGCGGCGACCTCGACACGGGCCGTGGCG ]
[+] EMBL CB669534 [ ggATCTGAACGATCTTTGATTCTTTATCCTGACCCTAATGCTTTGGCTCCCATGTGAATACTAGCAGTATGCTAGTAGTACGATGATGATGATGATGAAACAAAGGAAATGGAGCTCTCTAAACATGCCAGTACTATGATTATCAAAAGCCTAAAAAAAGGCCCCATTTTTATGTACAGATGTCTTTCAAAGTAGCAAAATTCGATCGAGTTTGCGTTTCTAGTGATGTTTGGTTGGGAATTCATCAGAAGCTTGTGCTCAGAATGTTGAGCAGTGAGACTCTGGTGTTCACCAGAGCGCGGAACACCTTCTCGCCGATGCTCTCCACGTCCGCGATGCACCGTCCCAGGTTGTCCAGGCGCTCGAACGCCGCCTTCCGTTCTCTCTCGTCCGGGTCCACGGCGACGTTGGGTTGGGGCCGCGCCGTGGCGGCGGAGGAGGTGGAGGAGGAGGAGGCGTCACTGTCGGCGTGCTGCTTACTGGCTGACCGGCGCTTCGCCCGCGACATCCAGCGCATCAGGTCGGCGACCCACCATATGCGCAGCGACGATGGCTTGGTGGTGATGATGTGGTGTCTTGGCGTCGCCGATGGTGTGGTGAATCTCGCCGGGGAGGGCATCCAGCAGGGCGTGGCGGCGACCTCGACACGGGCCGTGGCGGCGGCGATGGAGAGGGACCACACGCCGGAGAAGACCGCGGCCGAGGCCGAGGCGACCGC]
[-] EMBL AK111117 [ AAACATGCCAGTACTATGATTATCAAAAGCCTAAAAAAAGGCCCCATTTTTATGTACAGATGTCTTTCAAAGTAGCAAAATTCGATCGAGTTTGCGTTTCTAGTGATGTTTGGTTGGGAATTCATCAGAAGCTTGTGCTCAGAATGTTGAGCAGTGAGACTCTGGTGTTCACCAGAGCGCGGAACACCTTCTCGCCGATGCTCTCCACGTCCGCGATGCACCGTCCCAGGTTGTCCAGGCGCTCGAACGCCGCCTTCCGTTCTCTCTCGTCCGGGTCCACGGCGACGTTGGGTTGGGGCCGCGCCGTGGCGGCGGAGGAGGTGGAGGAGGAGGAGGCGTCACTGTCGGCGTGCTGCTTACTGGCTGACCGGCGCTTCGCCCGCGACATCCAGCGCATCAGGTCGGCGACCCACCATATGCGCAGCGACGATGGCTTGGT ]
consensusID : consensus_6726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[TTTTTTTTTTGGGAGCTCTCTAAACATGCCAGTACTATGATTATCAAAAGCCTAAAAAAAGGCCCCATTTTTATGTACAGATGTCTTTCAAAGTAGCAAAATTCGATCGAGTTGCGTTTCTAGTGATGTTGGTGGGAATTCATCAGAAGCTTGTGCTCAGAATGTTGAGCAGTGAGACTCTGGTGTTCACCAGAGCGCGGAACACCTTCTCGCCGATGCTCTCCACGTCCGCGATGCACCGTCCCAGGTTGTCCAGGCGCTCGAACGCCGCCTTCCGTTCTCTCTCGTCCGGGTCCACGGCGACGTTGGGTTGGGGCCGCGCCGTGGCGGCGGAGGAGGTGGAGGAGGAGGAGGCGTCACTGTCGGCGTGCTGCTTACTGGCTGACCGGGCTTCGCCGCGAATCCAGCGCATCAGGTCGGGAACCAACATATGCGCAGGAGATGGCTTGGTGGTGATGACTGTGGCGGTCTATGGCGTCAGCCGACTGGTGTGG]
[-] EMBL BI813622 [TTTTTTTTTTGGGAGCTCTCTAAACATGCCAGTACTATGATTATCAAAAGCCTAAAAAAAGGCCCCATTTTTATGTACAGATGTCTTTCAAAGTAGCAAAATTCGATCGAGTTGCGTTTCTAGTGATGTTGGTGGGAATTCATCAGAAGCTTGTGCTCAGAATGTTGAGCAGTGAGACTCTGGTGTTCACCAGAGCGCGGAACACCTTCTCGCCGATGCTCTCCACGTCCGCGATGCACCGTCCCAGGTTGTCCAGGCGCTCGAACGCCGCCTTCCGTTCTCTCTCGTCCGGGTCCACGGCGACGTTGGGTTGGGGCCGCGCCGTGGCGGCGGAGGAGGTGGAGGAGGAGGAGGCGTCACTGTCGGCGTGCTGCTTACTGGCTGACCGGGCTTCGCCGCGAATCCAGCGCATCAGGTCGGGAACCAACATATGCGCAGGAGATGGCTTGGTGGTGATGACTGTGGCGGTCTATGGCGTCAGCCGACTGGTGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6726#0 CCTTTTTTTTTAGTATCTGAACGATCTTTGATTCTTTATCCTGAAGCTAATGCTTTGGCT 60
consensus_6726#1 ------------------------------------------------------------
consensus_6726#0 CCCATGTGAATACTAGCAGTATGCTAGTAGTACGATGATGATGATGATGAAACAAAGGAA 120
consensus_6726#1 ---------------------------------------------------TTTTTTTTT 9
consensus_6726#0 ATGGAGCTCTCTAAACATGCCAGTACTATGATTATCAAAAGCCTAAAAAAAGGCCCCATT 180
consensus_6726#1 TGGGAGCTCTCTAAACATGCCAGTACTATGATTATCAAAAGCCTAAAAAAAGGCCCCATT 69
**********************************************************
consensus_6726#0 TTTATGTACAGATGTCTTTCAAAGTAGCAAAATTCGATCGAGTTTGCGTTTCTAGTGATG 240
consensus_6726#1 TTTATGTACAGATGTCTTTCAAAGTAGCAAAATTCGATCGAGTT-GCGTTTCTAGTGATG 128
******************************************** ***************
consensus_6726#0 TTTGGTTGGGAATTCATCAGAAGCTTGTGCTCAGAATGTTGAGCAGTGAGACTCTGGTGT 300
consensus_6726#1 TTGG--TGGGAATTCATCAGAAGCTTGTGCTCAGAATGTTGAGCAGTGAGACTCTGGTGT 186
** * ******************************************************
consensus_6726#0 TCACCAGAGCGCGGAACACCTTCTCGCCGATGCTCTCCACGTCCGCGATGCACCGTCCCA 360
consensus_6726#1 TCACCAGAGCGCGGAACACCTTCTCGCCGATGCTCTCCACGTCCGCGATGCACCGTCCCA 246
************************************************************
consensus_6726#0 GGTTGTCCAGGCGCTCGAACGCCGCCTTCCGTTCTCTCTCGTCCGGGTCCACGGCGACGT 420
consensus_6726#1 GGTTGTCCAGGCGCTCGAACGCCGCCTTCCGTTCTCTCTCGTCCGGGTCCACGGCGACGT 306
************************************************************
consensus_6726#0 TGGGTTGGGGCCGCGCCGTGGCGGCGGAGGAGGTGGAGGAGGAGGAGGCGTCACTGTCGG 480
consensus_6726#1 TGGGTTGGGGCCGCGCCGTGGCGGCGGAGGAGGTGGAGGAGGAGGAGGCGTCACTGTCGG 366
************************************************************
consensus_6726#0 CGTGCTGCTTACTGGCTGACCGGCGCTTCGCCCGCGACATCCAGCGCATCAGGTCGGCGA 540
consensus_6726#1 CGTGCTGCTTACTGGCTGACCGG-GCTTCGCC-GCGA-ATCCAGCGCATCAGGTCGG-GA 422
*********************** ******** **** ******************* **
consensus_6726#0 CCCACCATATGCGCAGCGACGATGGCTTGGTGGTGATGA-TGTGGTG-TCT-TGGCGTC- 596
consensus_6726#1 ACCAACATATGCGCAGGA--GATGGCTTGGTGGTGATGACTGTGGCGGTCTATGGCGTCA 480
*** *********** ******************* ***** * *** *******
consensus_6726#0 GCCGA-TGGTGTGGTGAATCTCGCCGGGGAGGGCATCCAGCAGGGCGTGGCGGCGACCTC 655
consensus_6726#1 GCCGACTGGTGTGG---------------------------------------------- 494
***** ********
consensus_6726#0 GACACGGGCCGTGGCGGCGGCGATGGAGAGGGACCACACGCCGGAGAAGACCGCGGCCGA 715
consensus_6726#1 ------------------------------------------------------------
consensus_6726#0 GGCCGAGGCGACCGC 730
consensus_6726#1 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||